Wall clock time and date at job start Fri Apr 10 2020 14:29:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 C 1.53002 * 112.84900 * 216.23066 * 3 2 1 5 5 C 1.53003 * 109.47338 * 50.32868 * 4 3 2 6 6 H 1.08999 * 109.47269 * 305.00414 * 5 4 3 7 7 O 1.42903 * 109.46459 * 65.00307 * 5 4 3 8 8 C 1.53001 * 109.47376 * 185.00117 * 5 4 3 9 9 N 1.46898 * 109.46893 * 180.02562 * 8 5 4 10 10 C 1.46964 * 110.99692 * 293.79556 * 9 8 5 11 11 C 1.53049 * 109.36150 * 176.81529 * 10 9 8 12 12 N 1.46958 * 109.36629 * 58.40495 * 11 10 9 13 13 C 1.46893 * 111.00167 * 176.81123 * 12 11 10 14 14 C 1.50701 * 109.47375 * 293.79880 * 13 12 11 15 15 H 1.08009 * 119.99451 * 0.02562 * 14 13 12 16 16 C 1.37873 * 120.00418 * 180.02562 * 14 13 12 17 17 N 1.31512 * 119.99856 * 180.02562 * 16 14 13 18 18 Si 1.86798 * 120.00052 * 359.97438 * 16 14 13 19 19 H 1.48496 * 109.46919 * 89.99903 * 18 16 14 20 20 H 1.48498 * 109.47121 * 209.99860 * 18 16 14 21 21 H 1.48498 * 109.47109 * 330.00108 * 18 16 14 22 22 C 1.46964 * 110.87960 * 300.67915 * 12 11 10 23 23 C 1.46961 * 110.99662 * 170.00448 * 9 8 5 24 24 C 1.53782 * 113.61805 * 347.42369 * 3 2 1 25 25 C 1.53957 * 87.01852 * 89.22932 * 24 3 2 26 26 C 1.53780 * 113.61731 * 85.03487 * 3 2 1 27 27 H 1.09005 * 109.46934 * 290.33390 * 4 3 2 28 28 H 1.08999 * 109.47130 * 170.33126 * 4 3 2 29 29 H 0.96700 * 114.00311 * 60.00313 * 7 5 4 30 30 H 1.08999 * 109.47164 * 300.00361 * 8 5 4 31 31 H 1.08997 * 109.47124 * 60.00063 * 8 5 4 32 32 H 1.09001 * 109.48823 * 296.78085 * 10 9 8 33 33 H 1.09000 * 109.48428 * 56.85165 * 10 9 8 34 34 H 1.08999 * 109.48690 * 298.43658 * 11 10 9 35 35 H 1.09002 * 109.48890 * 178.37171 * 11 10 9 36 36 H 1.09004 * 109.47524 * 53.79847 * 13 12 11 37 37 H 1.08998 * 109.47525 * 173.79973 * 13 12 11 38 38 H 0.97000 * 120.00231 * 180.02562 * 17 16 14 39 39 H 1.09001 * 109.48434 * 299.35478 * 22 12 11 40 40 H 1.08996 * 109.48662 * 179.29037 * 22 12 11 41 41 H 1.09002 * 109.48490 * 303.14649 * 23 9 8 42 42 H 1.08998 * 109.48899 * 63.21620 * 23 9 8 43 43 H 1.09001 * 113.61619 * 203.75279 * 24 3 2 44 44 H 1.09005 * 113.61341 * 334.65574 * 24 3 2 45 45 H 1.08994 * 113.53727 * 270.81537 * 25 24 3 46 46 H 1.09002 * 113.73910 * 139.94485 * 25 24 3 47 47 H 1.09000 * 113.61225 * 25.34629 * 26 3 2 48 48 H 1.09002 * 113.61608 * 156.17072 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.2016 1.1383 0.8333 5 6 2.5510 1.1493 2.2181 6 1 1.4680 1.2088 2.1103 7 8 2.8952 -0.0496 2.9155 8 6 3.0523 2.3603 3.0075 9 7 2.4281 2.3705 4.3373 10 6 0.9796 2.5976 4.2373 11 6 0.3566 2.5220 5.6332 12 7 0.9854 3.5263 6.5025 13 6 0.3612 3.5366 7.8322 14 6 -1.0642 4.0113 7.7144 15 1 -1.4663 4.2782 6.7482 16 6 -1.8549 4.1048 8.8399 17 7 -3.0990 4.5186 8.7370 18 14 -1.1597 3.6425 10.5109 19 1 -0.5507 4.8406 11.1423 20 1 -2.2514 3.1279 11.3761 21 1 -0.1243 2.5914 10.3426 22 6 2.4340 3.2993 6.6024 23 6 3.0569 3.3749 5.2065 24 6 3.2247 -1.3743 0.3068 25 6 3.1738 -1.6455 -1.2078 26 6 3.2241 -0.1210 -1.4037 27 1 3.0131 2.0897 0.3358 28 1 4.2763 0.9895 0.9380 29 1 3.8457 -0.1687 3.0477 30 1 4.1353 2.3008 3.1153 31 1 2.7899 3.2747 2.4755 32 1 0.7946 3.5829 3.8094 33 1 0.5351 1.8341 3.5989 34 1 0.5181 1.5279 6.0501 35 1 -0.7133 2.7188 5.5651 36 1 0.3755 2.5291 8.2481 37 1 0.9148 4.2083 8.4883 38 1 -3.6553 4.5848 9.5289 39 1 2.6189 2.3140 7.0303 40 1 2.8785 4.0628 7.2409 41 1 4.1269 3.1780 5.2746 42 1 2.8955 4.3689 4.7895 43 1 4.2372 -1.3193 0.7068 44 1 2.5729 -2.0249 0.8899 45 1 2.2385 -2.0975 -1.5379 46 1 4.0528 -2.1641 -1.5905 47 1 2.5719 0.2387 -2.1995 48 1 4.2360 0.2785 -1.4726 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886089967.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:29:17 Heat of formation + Delta-G solvation = 11.655854 kcal Electronic energy + Delta-G solvation = -25768.665534 eV Core-core repulsion = 22245.458662 eV Total energy + Delta-G solvation = -3523.206871 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 307.200 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.49962 -38.97088 -37.16691 -35.99812 -34.81957 -32.46874 -31.73346 -30.48600 -29.17367 -27.19140 -26.20464 -25.03954 -23.37973 -23.24344 -21.87482 -21.07459 -20.86766 -19.22523 -17.30721 -16.77737 -16.52202 -16.01824 -15.56578 -15.53682 -15.08562 -14.62188 -14.54546 -14.36869 -14.19872 -13.99318 -13.54027 -13.49144 -13.08792 -13.04140 -12.97248 -12.72011 -12.31011 -12.27373 -11.99005 -11.89049 -11.72412 -11.39558 -11.28188 -11.19724 -11.02370 -10.91880 -10.76796 -10.66582 -10.52417 -10.34055 -10.11028 -9.87388 -9.72043 -9.23623 -8.54391 -8.13635 -7.33178 -6.02710 -4.00001 2.48356 2.53865 3.30502 3.37854 3.40685 3.49224 3.74837 4.07660 4.15259 4.32355 4.38579 4.40466 4.44508 4.63721 4.78662 4.91837 4.97789 5.05794 5.18646 5.22750 5.26493 5.29487 5.33907 5.38737 5.46893 5.49795 5.52366 5.62744 5.65530 5.69481 5.78685 5.83750 5.84917 5.91202 6.04250 6.13834 6.33507 6.54397 6.68572 6.86956 7.00523 7.17844 7.25871 7.36103 7.61920 7.62690 7.94273 8.08299 8.68758 9.05285 9.59071 11.10447 Molecular weight = 307.20amu Principal moments of inertia in cm(-1) A = 0.025309 B = 0.002745 C = 0.002610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.039601 B =10196.526922 C =10725.403848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C 0.227 3.773 3 C 0.012 3.988 4 C -0.133 4.133 5 C 0.108 3.892 6 H 0.095 0.905 7 O -0.539 6.539 8 C 0.024 3.976 9 N -0.528 5.528 10 C 0.058 3.942 11 C 0.069 3.931 12 N -0.530 5.530 13 C 0.163 3.837 14 C -0.509 4.509 15 H 0.080 0.920 16 C 0.068 3.932 17 N -0.901 5.901 18 Si 0.876 3.124 19 H -0.276 1.276 20 H -0.286 1.286 21 H -0.268 1.268 22 C 0.054 3.946 23 C 0.062 3.938 24 C -0.108 4.108 25 C -0.149 4.149 26 C -0.121 4.121 27 H 0.082 0.918 28 H 0.089 0.911 29 H 0.368 0.632 30 H 0.076 0.924 31 H 0.040 0.960 32 H 0.038 0.962 33 H 0.071 0.929 34 H 0.030 0.970 35 H 0.091 0.909 36 H -0.011 1.011 37 H 0.023 0.977 38 H 0.263 0.737 39 H 0.031 0.969 40 H 0.071 0.929 41 H 0.069 0.931 42 H 0.038 0.962 43 H 0.099 0.901 44 H 0.079 0.921 45 H 0.079 0.921 46 H 0.077 0.923 47 H 0.073 0.927 48 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.823 -9.747 -19.659 30.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.098 5.098 2 C -0.091 4.091 3 C 0.009 3.991 4 C -0.173 4.173 5 C 0.048 3.952 6 H 0.113 0.887 7 O -0.342 6.342 8 C -0.105 4.105 9 N -0.253 5.253 10 C -0.070 4.070 11 C -0.060 4.060 12 N -0.255 5.255 13 C 0.037 3.963 14 C -0.547 4.547 15 H 0.098 0.902 16 C -0.134 4.134 17 N -0.540 5.540 18 Si 0.703 3.297 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.192 1.192 22 C -0.075 4.075 23 C -0.066 4.066 24 C -0.147 4.147 25 C -0.186 4.186 26 C -0.160 4.160 27 H 0.101 0.899 28 H 0.108 0.892 29 H 0.215 0.785 30 H 0.094 0.906 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.089 0.911 34 H 0.049 0.951 35 H 0.109 0.891 36 H 0.007 0.993 37 H 0.041 0.959 38 H 0.073 0.927 39 H 0.050 0.950 40 H 0.089 0.911 41 H 0.088 0.912 42 H 0.056 0.944 43 H 0.117 0.883 44 H 0.098 0.902 45 H 0.098 0.902 46 H 0.095 0.905 47 H 0.092 0.908 48 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 18.250 -9.779 -19.532 28.464 hybrid contribution 1.171 0.092 0.988 1.534 sum 19.421 -9.686 -18.544 28.546 Atomic orbital electron populations 1.81297 1.12435 1.07883 1.08185 1.28276 0.94064 0.93521 0.93234 1.19098 0.82331 0.98841 0.98876 1.22315 1.00981 0.97847 0.96121 1.21964 0.99995 0.84864 0.88401 0.88726 1.86677 1.28445 1.40511 1.78594 1.22786 0.99504 0.97470 0.90750 1.62116 1.04014 1.48884 1.10248 1.22265 0.86968 0.99351 0.98427 1.21995 0.99788 0.93310 0.90901 1.62114 1.00887 1.47645 1.14835 1.20146 0.95884 0.94940 0.85373 1.21033 0.93788 1.43732 0.96159 0.90236 1.24903 0.94746 0.94888 0.98841 1.69895 1.07028 1.47460 1.29617 0.86851 0.78996 0.79283 0.84587 1.20182 1.21212 1.19231 1.22102 0.90700 0.99524 0.95164 1.22141 0.97498 0.93252 0.93736 1.22976 1.01652 0.93511 0.96544 1.22994 1.02792 0.96083 0.96767 1.23041 1.01691 0.97075 0.94171 0.89948 0.89211 0.78541 0.90603 0.94233 0.94415 0.91114 0.95130 0.89126 0.99310 0.95860 0.92685 0.95038 0.91065 0.91220 0.94352 0.88279 0.90182 0.90197 0.90464 0.90775 0.88089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -5.99 18.54 42.16 0.78 -5.21 16 2 C 0.23 2.45 12.63 -20.76 -0.26 2.18 16 3 C 0.01 0.08 0.90 -156.48 -0.14 -0.06 16 4 C -0.13 -0.75 4.45 -26.73 -0.12 -0.87 16 5 C 0.11 0.99 2.60 -26.73 -0.07 0.92 16 6 H 0.09 1.17 5.33 -51.93 -0.28 0.89 16 7 O -0.54 -5.23 12.04 -35.23 -0.42 -5.66 16 8 C 0.02 0.24 4.62 -3.82 -0.02 0.22 16 9 N -0.53 -7.45 4.58 -234.46 -1.07 -8.52 16 10 C 0.06 0.96 5.41 -3.76 -0.02 0.94 16 11 C 0.07 1.41 5.43 -3.77 -0.02 1.39 16 12 N -0.53 -11.52 4.70 -235.91 -1.11 -12.63 16 13 C 0.16 4.08 3.79 -4.98 -0.02 4.06 16 14 C -0.51 -14.80 9.03 -34.44 -0.31 -15.11 16 15 H 0.08 2.51 7.37 -52.48 -0.39 2.13 16 16 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 17 N -0.90 -28.11 13.96 55.43 0.77 -27.34 16 18 Si 0.88 21.94 27.47 -169.99 -4.67 17.28 16 19 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 20 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 21 H -0.27 -6.51 6.54 56.52 0.37 -6.14 16 22 C 0.05 0.95 5.61 -3.76 -0.02 0.93 16 23 C 0.06 0.88 5.61 -3.76 -0.02 0.86 16 24 C -0.11 -0.57 6.17 -25.83 -0.16 -0.73 16 25 C -0.15 -0.69 7.80 -25.82 -0.20 -0.89 16 26 C -0.12 -0.52 7.21 -25.92 -0.19 -0.71 16 27 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.09 0.27 7.98 -51.93 -0.41 -0.15 16 29 H 0.37 2.16 9.05 45.56 0.41 2.58 16 30 H 0.08 0.59 8.03 -51.93 -0.42 0.18 16 31 H 0.04 0.40 8.12 -51.93 -0.42 -0.02 16 32 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.07 1.15 6.34 -51.93 -0.33 0.82 16 34 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.09 2.07 6.79 -51.93 -0.35 1.72 16 36 H -0.01 -0.28 7.18 -51.93 -0.37 -0.65 16 37 H 0.02 0.58 7.45 -51.93 -0.39 0.19 16 38 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 39 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.07 1.19 8.07 -51.93 -0.42 0.77 16 41 H 0.07 0.81 8.07 -51.93 -0.42 0.39 16 42 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.10 0.31 7.99 -51.93 -0.41 -0.10 16 44 H 0.08 0.57 8.08 -51.93 -0.42 0.15 16 45 H 0.08 0.46 8.13 -51.93 -0.42 0.04 16 46 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 47 H 0.07 0.36 8.08 -51.93 -0.42 -0.06 16 48 H 0.10 0.23 8.10 -51.93 -0.42 -0.19 16 LS Contribution 376.08 15.07 5.67 5.67 Total: -1.00 -34.64 376.08 -9.30 -43.94 By element: Atomic # 1 Polarization: 5.01 SS G_CDS: -7.58 Total: -2.57 kcal Atomic # 6 Polarization: -3.30 SS G_CDS: -1.67 Total: -4.96 kcal Atomic # 7 Polarization: -53.07 SS G_CDS: -0.63 Total: -53.70 kcal Atomic # 8 Polarization: -5.23 SS G_CDS: -0.42 Total: -5.66 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.67 Total: 17.28 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.64 -9.30 -43.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886089967.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.600 kcal (2) G-P(sol) polarization free energy of solvation -34.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds