Wall clock time and date at job start Fri Apr 10 2020 14:29:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 C 1.53002 * 112.84900 * 216.23066 * 3 2 1 5 5 C 1.53003 * 109.47338 * 50.32868 * 4 3 2 6 6 H 1.08999 * 109.47269 * 305.00414 * 5 4 3 7 7 O 1.42903 * 109.46459 * 65.00307 * 5 4 3 8 8 C 1.53001 * 109.47376 * 185.00117 * 5 4 3 9 9 N 1.46898 * 109.46893 * 180.02562 * 8 5 4 10 10 C 1.46964 * 110.99692 * 293.79556 * 9 8 5 11 11 C 1.53049 * 109.36150 * 176.81529 * 10 9 8 12 12 N 1.46958 * 109.36629 * 58.40495 * 11 10 9 13 13 C 1.46893 * 111.00167 * 176.81123 * 12 11 10 14 14 C 1.50701 * 109.47375 * 293.79880 * 13 12 11 15 15 H 1.08009 * 119.99451 * 0.02562 * 14 13 12 16 16 C 1.37873 * 120.00418 * 180.02562 * 14 13 12 17 17 N 1.31512 * 119.99856 * 180.02562 * 16 14 13 18 18 Si 1.86798 * 120.00052 * 359.97438 * 16 14 13 19 19 H 1.48496 * 109.46919 * 89.99903 * 18 16 14 20 20 H 1.48498 * 109.47121 * 209.99860 * 18 16 14 21 21 H 1.48498 * 109.47109 * 330.00108 * 18 16 14 22 22 C 1.46964 * 110.87960 * 300.67915 * 12 11 10 23 23 C 1.46961 * 110.99662 * 170.00448 * 9 8 5 24 24 C 1.53782 * 113.61805 * 347.42369 * 3 2 1 25 25 C 1.53957 * 87.01852 * 89.22932 * 24 3 2 26 26 C 1.53780 * 113.61731 * 85.03487 * 3 2 1 27 27 H 1.09005 * 109.46934 * 290.33390 * 4 3 2 28 28 H 1.08999 * 109.47130 * 170.33126 * 4 3 2 29 29 H 0.96700 * 114.00311 * 60.00313 * 7 5 4 30 30 H 1.08999 * 109.47164 * 300.00361 * 8 5 4 31 31 H 1.08997 * 109.47124 * 60.00063 * 8 5 4 32 32 H 1.09001 * 109.48823 * 296.78085 * 10 9 8 33 33 H 1.09000 * 109.48428 * 56.85165 * 10 9 8 34 34 H 1.08999 * 109.48690 * 298.43658 * 11 10 9 35 35 H 1.09002 * 109.48890 * 178.37171 * 11 10 9 36 36 H 1.09004 * 109.47524 * 53.79847 * 13 12 11 37 37 H 1.08998 * 109.47525 * 173.79973 * 13 12 11 38 38 H 0.97000 * 120.00231 * 180.02562 * 17 16 14 39 39 H 1.09001 * 109.48434 * 299.35478 * 22 12 11 40 40 H 1.08996 * 109.48662 * 179.29037 * 22 12 11 41 41 H 1.09002 * 109.48490 * 303.14649 * 23 9 8 42 42 H 1.08998 * 109.48899 * 63.21620 * 23 9 8 43 43 H 1.09001 * 113.61619 * 203.75279 * 24 3 2 44 44 H 1.09005 * 113.61341 * 334.65574 * 24 3 2 45 45 H 1.08994 * 113.53727 * 270.81537 * 25 24 3 46 46 H 1.09002 * 113.73910 * 139.94485 * 25 24 3 47 47 H 1.09000 * 113.61225 * 25.34629 * 26 3 2 48 48 H 1.09002 * 113.61608 * 156.17072 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.2016 1.1383 0.8333 5 6 2.5510 1.1493 2.2181 6 1 1.4680 1.2088 2.1103 7 8 2.8952 -0.0496 2.9155 8 6 3.0523 2.3603 3.0075 9 7 2.4281 2.3705 4.3373 10 6 0.9796 2.5976 4.2373 11 6 0.3566 2.5220 5.6332 12 7 0.9854 3.5263 6.5025 13 6 0.3612 3.5366 7.8322 14 6 -1.0642 4.0113 7.7144 15 1 -1.4663 4.2782 6.7482 16 6 -1.8549 4.1048 8.8399 17 7 -3.0990 4.5186 8.7370 18 14 -1.1597 3.6425 10.5109 19 1 -0.5507 4.8406 11.1423 20 1 -2.2514 3.1279 11.3761 21 1 -0.1243 2.5914 10.3426 22 6 2.4340 3.2993 6.6024 23 6 3.0569 3.3749 5.2065 24 6 3.2247 -1.3743 0.3068 25 6 3.1738 -1.6455 -1.2078 26 6 3.2241 -0.1210 -1.4037 27 1 3.0131 2.0897 0.3358 28 1 4.2763 0.9895 0.9380 29 1 3.8457 -0.1687 3.0477 30 1 4.1353 2.3008 3.1153 31 1 2.7899 3.2747 2.4755 32 1 0.7946 3.5829 3.8094 33 1 0.5351 1.8341 3.5989 34 1 0.5181 1.5279 6.0501 35 1 -0.7133 2.7188 5.5651 36 1 0.3755 2.5291 8.2481 37 1 0.9148 4.2083 8.4883 38 1 -3.6553 4.5848 9.5289 39 1 2.6189 2.3140 7.0303 40 1 2.8785 4.0628 7.2409 41 1 4.1269 3.1780 5.2746 42 1 2.8955 4.3689 4.7895 43 1 4.2372 -1.3193 0.7068 44 1 2.5729 -2.0249 0.8899 45 1 2.2385 -2.0975 -1.5379 46 1 4.0528 -2.1641 -1.5905 47 1 2.5719 0.2387 -2.1995 48 1 4.2360 0.2785 -1.4726 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000886089967.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:29:16 Heat of formation + Delta-G solvation = -16.238343 kcal Electronic energy + Delta-G solvation = -25769.875117 eV Core-core repulsion = 22245.458662 eV Total energy + Delta-G solvation = -3524.416454 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 307.200 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.05653 -40.18676 -38.11534 -36.88135 -36.19859 -34.53918 -32.48712 -31.87224 -30.66685 -28.48515 -26.57356 -26.25968 -24.73078 -24.21567 -22.98291 -22.47610 -21.49518 -20.67751 -18.98814 -18.00027 -17.28542 -16.81387 -16.78500 -16.32291 -16.02775 -15.90790 -15.83152 -15.55373 -15.34472 -15.18072 -14.98683 -14.75572 -14.48213 -13.95784 -13.90355 -13.74225 -13.56911 -13.18095 -13.09504 -12.92559 -12.78283 -12.70107 -12.34855 -12.26642 -12.20987 -12.15030 -11.88065 -11.69728 -11.64588 -11.53114 -11.47419 -11.33179 -11.07229 -10.81504 -10.48292 -9.28051 -9.06784 -8.32121 -6.36331 1.31581 1.34185 1.45126 1.69457 1.73348 2.31591 2.81155 2.90984 3.00340 3.18145 3.53189 3.66187 3.74175 3.80374 3.94862 4.01018 4.05351 4.14012 4.28466 4.29199 4.34149 4.43500 4.47230 4.61923 4.63282 4.69373 4.76778 4.79890 4.83338 4.93786 4.95140 4.97608 4.98124 5.03378 5.06913 5.14831 5.17560 5.20705 5.24175 5.30808 5.48469 5.52159 5.90328 6.01387 6.17032 6.32055 6.56618 6.62326 6.69329 7.16853 7.27451 8.84770 Molecular weight = 307.20amu Principal moments of inertia in cm(-1) A = 0.025309 B = 0.002745 C = 0.002610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.039601 B =10196.526922 C =10725.403848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C 0.249 3.751 3 C -0.001 4.001 4 C -0.122 4.122 5 C 0.111 3.889 6 H 0.051 0.949 7 O -0.558 6.558 8 C 0.024 3.976 9 N -0.533 5.533 10 C 0.074 3.926 11 C 0.074 3.926 12 N -0.545 5.545 13 C 0.173 3.827 14 C -0.520 4.520 15 H 0.033 0.967 16 C 0.006 3.994 17 N -0.949 5.949 18 Si 0.952 3.048 19 H -0.260 1.260 20 H -0.281 1.281 21 H -0.253 1.253 22 C 0.050 3.950 23 C 0.068 3.932 24 C -0.102 4.102 25 C -0.151 4.151 26 C -0.107 4.107 27 H 0.088 0.912 28 H 0.135 0.865 29 H 0.387 0.613 30 H 0.115 0.885 31 H 0.041 0.959 32 H 0.027 0.973 33 H 0.069 0.931 34 H 0.020 0.980 35 H 0.049 0.951 36 H -0.017 1.017 37 H 0.034 0.966 38 H 0.268 0.732 39 H 0.030 0.970 40 H 0.083 0.917 41 H 0.112 0.888 42 H 0.034 0.966 43 H 0.134 0.866 44 H 0.052 0.948 45 H 0.056 0.944 46 H 0.098 0.902 47 H 0.064 0.936 48 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.155 -10.221 -19.816 34.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.177 5.177 2 C -0.068 4.068 3 C -0.004 4.004 4 C -0.160 4.160 5 C 0.051 3.949 6 H 0.069 0.931 7 O -0.365 6.365 8 C -0.103 4.103 9 N -0.258 5.258 10 C -0.054 4.054 11 C -0.055 4.055 12 N -0.270 5.270 13 C 0.046 3.954 14 C -0.558 4.558 15 H 0.051 0.949 16 C -0.191 4.191 17 N -0.589 5.589 18 Si 0.775 3.225 19 H -0.184 1.184 20 H -0.206 1.206 21 H -0.177 1.177 22 C -0.078 4.078 23 C -0.060 4.060 24 C -0.141 4.141 25 C -0.188 4.188 26 C -0.145 4.145 27 H 0.107 0.893 28 H 0.153 0.847 29 H 0.237 0.763 30 H 0.133 0.867 31 H 0.059 0.941 32 H 0.045 0.955 33 H 0.088 0.912 34 H 0.038 0.962 35 H 0.068 0.932 36 H 0.001 0.999 37 H 0.052 0.948 38 H 0.076 0.924 39 H 0.048 0.952 40 H 0.101 0.899 41 H 0.130 0.870 42 H 0.052 0.948 43 H 0.152 0.848 44 H 0.071 0.929 45 H 0.075 0.925 46 H 0.117 0.883 47 H 0.083 0.917 48 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 23.622 -10.256 -19.719 32.435 hybrid contribution -0.503 0.220 0.954 1.101 sum 23.119 -10.035 -18.765 31.422 Atomic orbital electron populations 1.81291 1.15015 1.10483 1.10878 1.29339 0.95226 0.91279 0.90952 1.19553 0.79394 1.00301 1.01187 1.22309 1.02937 0.97659 0.93137 1.21813 0.98011 0.84538 0.90518 0.93054 1.86655 1.30425 1.40537 1.78912 1.22955 1.01271 0.97789 0.88308 1.62105 1.01974 1.48731 1.12978 1.21948 0.89429 0.98742 0.95307 1.21848 0.98020 0.92374 0.93239 1.62034 1.03552 1.48336 1.13079 1.19905 0.93708 0.94276 0.87485 1.21254 0.96273 1.43778 0.94470 0.94901 1.25907 0.94933 0.94626 1.03681 1.70058 1.08763 1.48934 1.31195 0.85643 0.78594 0.79781 0.78491 1.18433 1.20644 1.17722 1.22285 0.87692 0.99773 0.98094 1.22157 0.99273 0.93130 0.91406 1.23062 1.02602 0.91773 0.96622 1.22994 1.02660 0.96722 0.96465 1.23105 1.03007 0.96527 0.91910 0.89300 0.84723 0.76333 0.86689 0.94079 0.95473 0.91230 0.96173 0.93227 0.99899 0.94848 0.92351 0.95198 0.89866 0.86991 0.94811 0.84831 0.92859 0.92494 0.88300 0.91711 0.84482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -15.36 18.54 20.00 0.37 -14.99 16 2 C 0.25 5.54 12.63 89.44 1.13 6.67 16 3 C 0.00 -0.01 0.90 -53.46 -0.05 -0.06 16 4 C -0.12 -0.88 4.45 30.60 0.14 -0.74 16 5 C 0.11 1.80 2.60 30.60 0.08 1.87 16 6 H 0.05 1.29 5.33 -2.39 -0.01 1.28 16 7 O -0.56 -9.44 12.04 -148.98 -1.79 -11.23 16 8 C 0.02 0.40 4.62 86.30 0.40 0.80 16 9 N -0.53 -13.94 4.58 -895.70 -4.10 -18.04 16 10 C 0.07 2.55 5.41 86.31 0.47 3.02 16 11 C 0.07 3.20 5.43 86.31 0.47 3.67 16 12 N -0.55 -24.07 4.70 -900.28 -4.23 -28.30 16 13 C 0.17 8.79 3.79 85.56 0.32 9.11 16 14 C -0.52 -31.62 9.03 25.60 0.23 -31.39 16 15 H 0.03 2.24 7.37 -2.91 -0.02 2.22 16 16 C 0.01 0.34 5.47 84.65 0.46 0.81 16 17 N -0.95 -61.43 13.96 21.45 0.30 -61.13 16 18 Si 0.95 45.55 27.47 68.60 1.88 47.43 16 19 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 20 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 21 H -0.25 -11.45 6.54 99.48 0.65 -10.80 16 22 C 0.05 1.66 5.61 86.31 0.48 2.14 16 23 C 0.07 1.73 5.61 86.31 0.48 2.21 16 24 C -0.10 -0.79 6.17 31.18 0.19 -0.60 16 25 C -0.15 -1.04 7.80 31.18 0.24 -0.79 16 26 C -0.11 -0.56 7.21 31.12 0.22 -0.34 16 27 H 0.09 0.59 8.14 -2.38 -0.02 0.57 16 28 H 0.13 -0.15 7.98 -2.39 -0.02 -0.17 16 29 H 0.39 2.83 9.05 -74.06 -0.67 2.16 16 30 H 0.12 1.07 8.03 -2.39 -0.02 1.05 16 31 H 0.04 0.70 8.12 -2.39 -0.02 0.68 16 32 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.07 2.40 6.34 -2.39 -0.02 2.38 16 34 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.05 2.49 6.79 -2.39 -0.02 2.48 16 36 H -0.02 -0.86 7.18 -2.38 -0.02 -0.87 16 37 H 0.03 1.63 7.45 -2.39 -0.02 1.61 16 38 H 0.27 16.07 8.31 -92.71 -0.77 15.30 16 39 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.08 2.56 8.07 -2.39 -0.02 2.54 16 41 H 0.11 1.98 8.07 -2.39 -0.02 1.96 16 42 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 43 H 0.13 0.14 7.99 -2.39 -0.02 0.12 16 44 H 0.05 0.72 8.08 -2.38 -0.02 0.70 16 45 H 0.06 0.65 8.13 -2.39 -0.02 0.63 16 46 H 0.10 0.28 8.14 -2.39 -0.02 0.26 16 47 H 0.06 0.50 8.08 -2.39 -0.02 0.48 16 48 H 0.14 -0.19 8.10 -2.39 -0.02 -0.21 16 Total: -1.00 -83.14 376.08 -2.08 -85.22 By element: Atomic # 1 Polarization: 4.44 SS G_CDS: 0.21 Total: 4.66 kcal Atomic # 6 Polarization: -8.89 SS G_CDS: 5.28 Total: -3.61 kcal Atomic # 7 Polarization: -114.80 SS G_CDS: -7.66 Total: -122.46 kcal Atomic # 8 Polarization: -9.44 SS G_CDS: -1.79 Total: -11.23 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 1.88 Total: 47.43 kcal Total: -83.14 -2.08 -85.22 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886089967.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.979 kcal (2) G-P(sol) polarization free energy of solvation -83.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds