Wall clock time and date at job start Fri Apr 10 2020 14:28:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86797 * 120.00241 * 2 1 4 4 H 1.48501 * 109.47087 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47426 * 299.99938 * 3 2 1 6 6 H 1.48497 * 109.47269 * 60.00195 * 3 2 1 7 7 C 1.38814 * 119.99930 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00213 * 180.02562 * 7 2 1 9 9 N 1.36946 * 119.99867 * 359.97438 * 7 2 1 10 10 C 1.47743 * 125.82120 * 359.91271 * 9 7 2 11 11 C 1.54909 * 104.83995 * 155.82347 * 10 9 7 12 12 C 1.55159 * 101.57990 * 37.09908 * 11 10 9 13 13 H 1.08999 * 110.72303 * 82.85766 * 12 11 10 14 14 C 1.53006 * 110.71889 * 206.13300 * 12 11 10 15 15 N 1.46500 * 109.46719 * 179.97438 * 14 12 11 16 16 C 1.34781 * 119.99697 * 180.02562 * 15 14 12 17 17 O 1.21287 * 119.99818 * 359.97438 * 16 15 14 18 18 C 1.50698 * 119.99943 * 180.02562 * 16 15 14 19 19 C 1.54133 * 110.74535 * 83.88143 * 18 16 15 20 20 C 1.54459 * 103.21792 * 261.57375 * 19 18 16 21 21 C 1.54842 * 101.97251 * 324.75415 * 20 19 18 22 22 N 1.47856 * 110.77197 * 324.99198 * 18 16 15 23 23 C 1.47949 * 108.37111 * 239.68051 * 22 18 16 24 24 C 1.54835 * 105.06967 * 22.81990 * 23 22 18 25 25 C 1.54139 * 110.74145 * 206.10990 * 18 16 15 26 26 C 1.47020 * 125.64749 * 180.02562 * 9 7 2 27 27 H 0.96998 * 119.99524 * 359.97438 * 1 2 3 28 28 H 1.09003 * 110.29227 * 37.02208 * 10 9 7 29 29 H 1.08996 * 110.53057 * 274.75420 * 10 9 7 30 30 H 1.08994 * 111.00889 * 279.01887 * 11 10 9 31 31 H 1.09001 * 111.03628 * 155.18095 * 11 10 9 32 32 H 1.08996 * 109.46429 * 299.97004 * 14 12 11 33 33 H 1.08997 * 109.47048 * 59.97457 * 14 12 11 34 34 H 0.97000 * 120.00631 * 359.97438 * 15 14 12 35 35 H 1.09001 * 110.73212 * 20.93455 * 19 18 16 36 36 H 1.09006 * 110.72851 * 144.23424 * 19 18 16 37 37 H 1.08990 * 111.32307 * 206.33626 * 20 19 18 38 38 H 1.09000 * 110.35728 * 82.73567 * 20 19 18 39 39 H 1.09002 * 110.31987 * 277.21824 * 21 20 19 40 40 H 1.09003 * 110.40895 * 155.05451 * 21 20 19 41 41 H 1.09008 * 110.31960 * 141.71745 * 23 22 18 42 42 H 1.09003 * 110.32503 * 263.81362 * 23 22 18 43 43 H 1.09002 * 110.99222 * 81.41572 * 24 23 22 44 44 H 1.08998 * 110.99176 * 205.23553 * 24 23 22 45 45 H 1.09000 * 110.72782 * 215.76359 * 25 18 16 46 46 H 1.08996 * 110.73218 * 339.06651 * 25 18 16 47 47 H 1.09002 * 109.88367 * 61.61048 * 26 9 7 48 48 H 1.09000 * 109.88319 * 300.59666 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3462 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1444 -2.5379 0.0018 11 6 -0.4016 -3.9366 -0.6124 12 6 0.7805 -4.7551 -0.0292 13 1 0.5493 -5.1029 0.9776 14 6 1.1275 -5.9317 -0.9437 15 7 2.2453 -6.6840 -0.3686 16 6 2.7257 -7.7699 -1.0062 17 8 2.2323 -8.1244 -2.0559 18 6 3.8751 -8.5442 -0.4143 19 6 3.3700 -9.5562 0.6328 20 6 3.6063 -8.8254 1.9729 21 6 4.9165 -8.0503 1.6894 22 7 4.8201 -7.6373 0.2719 23 6 6.1458 -7.7722 -0.3708 24 6 5.8518 -8.3175 -1.7898 25 6 4.6641 -9.2780 -1.5166 26 6 1.9316 -3.7276 -0.0005 27 1 -0.4849 0.8401 0.0004 28 1 -0.6042 -1.7636 -0.6122 29 1 -0.5315 -2.4935 1.0198 30 1 -0.3527 -3.9005 -1.7006 31 1 -1.3579 -4.3402 -0.2796 32 1 0.2606 -6.5853 -1.0394 33 1 1.4100 -5.5564 -1.9273 34 1 2.6402 -6.4002 0.4708 35 1 2.3133 -9.7751 0.4794 36 1 3.9629 -10.4704 0.6031 37 1 3.7403 -9.5324 2.7915 38 1 2.7846 -8.1402 2.1812 39 1 5.7797 -8.6993 1.8368 40 1 4.9873 -7.1747 2.3348 41 1 6.6371 -6.8011 -0.4326 42 1 6.7665 -8.4748 0.1854 43 1 5.5565 -7.5133 -2.4637 44 1 6.7101 -8.8607 -2.1850 45 1 5.0227 -10.2425 -1.1572 46 1 4.0537 -9.4009 -2.4112 47 1 2.5285 -3.8644 0.9012 48 1 2.5598 -3.8502 -0.8828 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028659533.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:28:33 Heat of formation + Delta-G solvation = -7.618484 kcal Electronic energy + Delta-G solvation = -26591.244691 eV Core-core repulsion = 23067.202022 eV Total energy + Delta-G solvation = -3524.042669 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 307.200 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.08160 -38.60934 -37.44594 -34.70570 -34.09780 -32.39246 -31.58685 -29.82826 -28.74141 -27.88762 -25.76328 -25.50242 -23.75452 -22.01964 -21.71342 -20.98889 -20.25905 -19.67062 -18.98208 -17.49569 -16.76448 -16.37211 -15.80620 -15.44619 -14.95625 -14.73762 -14.56847 -14.26944 -14.11536 -13.69687 -13.52331 -13.27822 -12.85420 -12.52733 -12.43741 -12.27756 -11.84554 -11.75215 -11.70758 -11.62906 -11.43345 -11.37827 -11.20333 -11.09468 -10.90586 -10.78816 -10.65679 -10.35612 -10.07988 -9.94833 -9.85491 -9.69016 -9.46494 -8.77971 -8.71385 -8.61885 -6.78385 -5.61935 -3.02728 2.69961 3.37950 3.42081 3.47530 3.50073 3.64957 4.20489 4.23712 4.46670 4.52284 4.69477 4.74287 4.86215 4.92084 5.07987 5.18664 5.22972 5.30293 5.34351 5.42113 5.47470 5.48986 5.57253 5.58204 5.62018 5.68979 5.73469 5.75925 5.83506 5.90209 5.96432 6.00647 6.14375 6.19709 6.41054 6.48327 6.58999 6.64508 6.64605 6.68252 6.82645 6.99081 7.54836 7.67240 7.77110 7.89096 8.39831 8.42314 9.25832 9.87195 10.52890 11.42601 Molecular weight = 307.20amu Principal moments of inertia in cm(-1) A = 0.018675 B = 0.003411 C = 0.003197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.941297 B = 8206.568783 C = 8756.638070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.013 4.013 3 Si 0.913 3.087 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.219 4.219 8 H 0.077 0.923 9 N -0.605 5.605 10 C 0.152 3.848 11 C -0.135 4.135 12 C -0.113 4.113 13 H 0.074 0.926 14 C 0.131 3.869 15 N -0.707 5.707 16 C 0.539 3.461 17 O -0.552 6.552 18 C 0.069 3.931 19 C -0.124 4.124 20 C -0.135 4.135 21 C 0.031 3.969 22 N -0.504 5.504 23 C 0.035 3.965 24 C -0.133 4.133 25 C -0.125 4.125 26 C 0.144 3.856 27 H 0.251 0.749 28 H 0.106 0.894 29 H 0.012 0.988 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.407 0.593 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.077 0.923 39 H 0.054 0.946 40 H 0.088 0.912 41 H 0.085 0.915 42 H 0.053 0.947 43 H 0.077 0.923 44 H 0.076 0.924 45 H 0.074 0.926 46 H 0.094 0.906 47 H 0.018 0.982 48 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.880 -21.012 2.575 22.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.208 4.208 3 Si 0.744 3.256 4 H -0.206 1.206 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.348 4.348 8 H 0.095 0.905 9 N -0.331 5.331 10 C 0.027 3.973 11 C -0.174 4.174 12 C -0.132 4.132 13 H 0.092 0.908 14 C 0.008 3.992 15 N -0.357 5.357 16 C 0.323 3.677 17 O -0.430 6.430 18 C -0.024 4.024 19 C -0.163 4.163 20 C -0.173 4.173 21 C -0.096 4.096 22 N -0.229 5.229 23 C -0.092 4.092 24 C -0.171 4.171 25 C -0.164 4.164 26 C 0.017 3.983 27 H 0.062 0.938 28 H 0.124 0.876 29 H 0.030 0.970 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.242 0.758 35 H 0.098 0.902 36 H 0.096 0.904 37 H 0.098 0.902 38 H 0.096 0.904 39 H 0.072 0.928 40 H 0.106 0.894 41 H 0.104 0.896 42 H 0.071 0.929 43 H 0.096 0.904 44 H 0.095 0.905 45 H 0.093 0.907 46 H 0.112 0.888 47 H 0.036 0.964 48 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 8.307 -20.435 1.798 22.132 hybrid contribution 0.973 0.198 0.614 1.167 sum 9.280 -20.236 2.413 22.393 Atomic orbital electron populations 1.69807 1.04878 1.24566 1.57936 1.24776 0.95716 0.97662 1.02631 0.86010 0.78667 0.83702 0.77217 1.20555 1.21766 1.21812 1.19134 0.90515 0.82494 1.42618 0.90487 1.44588 1.01928 0.99771 1.86810 1.21962 0.84724 0.92511 0.98105 1.23000 0.95529 0.98610 1.00306 1.22423 0.98233 0.94108 0.98482 0.90770 1.21448 0.88274 0.92239 0.97288 1.45945 1.35043 1.27987 1.26710 1.19942 0.83183 0.80521 0.84004 1.90670 1.60832 1.68698 1.22825 1.22421 0.92884 0.91655 0.95434 1.22690 1.02555 0.97520 0.93543 1.22713 0.98099 0.99396 0.97104 1.23365 0.97210 0.99301 0.89760 1.65315 1.07244 1.48092 1.02221 1.23298 0.90288 1.01289 0.94347 1.22789 0.98025 0.99239 0.97042 1.22806 0.96671 0.97678 0.99232 1.21290 0.93393 0.85773 0.97797 0.93848 0.87626 0.97030 0.91877 0.92202 0.91911 0.91419 0.75802 0.90173 0.90363 0.90169 0.90388 0.92808 0.89363 0.89638 0.92891 0.90416 0.90522 0.90739 0.88751 0.96409 0.95755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.19 10.11 55.49 0.56 -26.63 16 2 C -0.01 -0.36 5.49 -17.43 -0.10 -0.46 16 3 Si 0.91 22.33 29.55 -169.99 -5.02 17.31 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 6 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 7 C -0.22 -6.22 10.28 -15.05 -0.15 -6.37 16 8 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 9 N -0.60 -15.74 3.41 -169.81 -0.58 -16.32 16 10 C 0.15 3.72 5.91 -2.35 -0.01 3.70 16 11 C -0.14 -2.57 6.53 -24.58 -0.16 -2.73 16 12 C -0.11 -1.96 3.02 -88.78 -0.27 -2.23 16 13 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 14 C 0.13 2.06 4.99 -4.04 -0.02 2.04 16 15 N -0.71 -10.10 5.31 -60.29 -0.32 -10.42 16 16 C 0.54 7.86 6.67 -10.98 -0.07 7.78 16 17 O -0.55 -9.83 15.67 5.55 0.09 -9.74 16 18 C 0.07 0.76 0.91 -131.04 -0.12 0.64 16 19 C -0.12 -1.10 6.01 -25.37 -0.15 -1.25 16 20 C -0.14 -1.04 7.04 -24.99 -0.18 -1.21 16 21 C 0.03 0.26 6.73 -2.27 -0.02 0.24 16 22 N -0.50 -5.24 4.73 -214.07 -1.01 -6.25 16 23 C 0.04 0.32 6.72 -2.28 -0.02 0.31 16 24 C -0.13 -1.25 7.07 -24.62 -0.17 -1.42 16 25 C -0.13 -1.27 6.00 -24.99 -0.15 -1.42 16 26 C 0.14 3.03 6.52 -3.06 -0.02 3.01 16 27 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 28 H 0.11 2.92 5.88 -51.93 -0.31 2.61 16 29 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 1.20 8.05 -51.93 -0.42 0.79 16 31 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 32 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.07 1.19 8.06 -51.93 -0.42 0.77 16 34 H 0.41 5.44 7.75 -40.82 -0.32 5.12 16 35 H 0.08 0.76 7.85 -51.93 -0.41 0.36 16 36 H 0.08 0.58 7.36 -51.93 -0.38 0.20 16 37 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.05 0.38 7.08 -51.93 -0.37 0.01 16 40 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 41 H 0.09 0.80 8.14 -51.92 -0.42 0.38 16 42 H 0.05 0.40 7.08 -51.93 -0.37 0.03 16 43 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 44 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.07 0.61 7.36 -51.93 -0.38 0.23 16 46 H 0.09 1.14 6.86 -51.93 -0.36 0.78 16 47 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 48 H 0.02 0.53 7.76 -51.93 -0.40 0.13 16 LS Contribution 366.78 15.07 5.53 5.53 Total: -1.00 -32.12 366.78 -10.69 -42.81 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: -8.32 Total: 3.08 kcal Atomic # 6 Polarization: 2.24 SS G_CDS: -1.61 Total: 0.63 kcal Atomic # 7 Polarization: -58.27 SS G_CDS: -1.35 Total: -59.62 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: 0.09 Total: -9.74 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.12 -10.69 -42.81 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028659533.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.189 kcal (2) G-P(sol) polarization free energy of solvation -32.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds