Wall clock time and date at job start Fri Apr 10 2020 14:29:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86802 * 120.00121 * 2 1 4 4 H 1.48494 * 109.47316 * 270.00646 * 3 2 1 5 5 H 1.48506 * 109.46979 * 30.00199 * 3 2 1 6 6 H 1.48499 * 109.47484 * 149.99874 * 3 2 1 7 7 C 1.38812 * 120.00268 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00341 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00004 * 0.02562 * 7 2 1 10 10 C 1.47426 * 125.64563 * 0.02562 * 9 7 2 11 11 C 1.54910 * 104.83287 * 155.83951 * 10 9 7 12 12 C 1.55158 * 101.58052 * 37.00499 * 11 10 9 13 13 H 1.08997 * 110.71594 * 83.04744 * 12 11 10 14 14 C 1.53000 * 110.71725 * 206.13487 * 12 11 10 15 15 N 1.46499 * 109.46840 * 185.00055 * 14 12 11 16 16 C 1.34779 * 119.99872 * 180.02562 * 15 14 12 17 17 O 1.21278 * 120.00071 * 359.97438 * 16 15 14 18 18 C 1.50703 * 119.99944 * 180.02562 * 16 15 14 19 19 C 1.54987 * 113.20160 * 64.16973 * 18 16 15 20 20 C 1.54063 * 104.76618 * 146.46868 * 19 18 16 21 21 N 1.48237 * 106.69518 * 1.01652 * 20 19 18 22 22 C 1.48803 * 105.17613 * 332.51427 * 21 20 19 23 23 C 1.47680 * 108.91130 * 88.16371 * 21 20 19 24 24 C 1.52995 * 109.28699 * 312.91390 * 23 21 20 25 25 C 1.54008 * 113.03023 * 301.17560 * 18 16 15 26 26 C 1.47018 * 125.65149 * 179.97438 * 9 7 2 27 27 H 0.97001 * 120.00425 * 359.97438 * 1 2 3 28 28 H 1.08993 * 110.37002 * 36.99615 * 10 9 7 29 29 H 1.09008 * 110.36676 * 274.67726 * 10 9 7 30 30 H 1.09007 * 111.00274 * 278.93306 * 11 10 9 31 31 H 1.08995 * 111.03743 * 155.09955 * 11 10 9 32 32 H 1.09002 * 109.47398 * 305.00381 * 14 12 11 33 33 H 1.09001 * 109.47194 * 65.00562 * 14 12 11 34 34 H 0.97000 * 120.00420 * 0.02562 * 15 14 12 35 35 H 1.09003 * 110.38114 * 265.29082 * 19 18 16 36 36 H 1.08999 * 110.38016 * 27.64983 * 19 18 16 37 37 H 1.08999 * 110.01145 * 241.70965 * 20 19 18 38 38 H 1.09003 * 110.05337 * 120.34855 * 20 19 18 39 39 H 1.08998 * 110.93367 * 284.56271 * 22 21 20 40 40 H 1.09008 * 110.96401 * 160.90833 * 22 21 20 41 41 H 1.09000 * 109.50285 * 72.85708 * 23 21 20 42 42 H 1.08997 * 109.50470 * 192.97155 * 23 21 20 43 43 H 1.09000 * 109.36726 * 64.97744 * 24 23 21 44 44 H 1.09000 * 109.36766 * 184.72109 * 24 23 21 45 45 H 1.08997 * 109.63486 * 291.83574 * 25 18 16 46 46 H 1.08999 * 109.63735 * 52.42763 * 25 18 16 47 47 H 1.09000 * 109.88513 * 61.67495 * 26 9 7 48 48 H 1.09000 * 109.87969 * 300.51296 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4975 2.0465 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0016 10 6 -0.1415 -2.5332 -0.0028 11 6 -0.4012 -3.9316 -0.6165 12 6 0.7785 -4.7524 -0.0317 13 1 0.5440 -5.1019 0.9737 14 6 1.1238 -5.9302 -0.9452 15 7 2.1570 -6.7530 -0.3115 16 6 2.6211 -7.8525 -0.9379 17 8 2.1830 -8.1609 -2.0260 18 6 3.6836 -8.6993 -0.2858 19 6 3.2107 -9.3647 1.0316 20 6 3.9445 -10.7187 1.0730 21 7 4.7927 -10.7807 -0.1411 22 6 4.1018 -9.9246 -1.1431 23 6 6.1031 -10.1690 0.1587 24 6 5.8858 -8.8344 0.8745 25 6 4.9752 -7.9173 0.0175 26 6 1.9318 -3.7275 -0.0028 27 1 -0.4851 0.8400 0.0004 28 1 -0.5989 -1.7581 -0.6177 29 1 -0.5280 -2.4880 1.0155 30 1 -0.3508 -3.8961 -1.7049 31 1 -1.3588 -4.3328 -0.2848 32 1 0.2316 -6.5332 -1.1136 33 1 1.4934 -5.5539 -1.8991 34 1 2.5072 -6.5066 0.5588 35 1 3.4935 -8.7534 1.8885 36 1 2.1317 -9.5183 1.0133 37 1 3.2221 -11.5349 1.0654 38 1 4.5665 -10.7796 1.9661 39 1 3.2272 -10.4311 -1.5512 40 1 4.7845 -9.6279 -1.9395 41 1 6.6781 -10.8367 0.8003 42 1 6.6466 -9.9991 -0.7707 43 1 5.4205 -9.0155 1.8434 44 1 6.8472 -8.3424 1.0216 45 1 5.4681 -7.6478 -0.9166 46 1 4.7340 -7.0159 0.5809 47 1 2.5277 -3.8655 0.8994 48 1 2.5588 -3.8497 -0.8860 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028959418.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:29:09 Heat of formation + Delta-G solvation = -5.678492 kcal Electronic energy + Delta-G solvation = -26226.939446 eV Core-core repulsion = 22702.980901 eV Total energy + Delta-G solvation = -3523.958545 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 307.200 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.50331 -39.11212 -37.60623 -34.71083 -32.93658 -32.35234 -32.15219 -29.79568 -29.53569 -28.25576 -25.73426 -24.96174 -24.00508 -22.91130 -21.83925 -20.63936 -20.19060 -19.84211 -19.13442 -17.37913 -16.84238 -16.56315 -16.04555 -15.66182 -15.08388 -14.79893 -14.55691 -14.25751 -14.16740 -13.66335 -13.38515 -13.16878 -13.08727 -12.92268 -12.65570 -12.53909 -11.97240 -11.89991 -11.80787 -11.71397 -11.52216 -11.34510 -11.08891 -11.06877 -10.98296 -10.82913 -10.82418 -10.43756 -10.15896 -10.04466 -9.90085 -9.71036 -9.51270 -8.98953 -8.84471 -8.67807 -6.86535 -5.68293 -3.10146 2.57035 3.15357 3.37822 3.42661 3.44619 3.64857 4.16493 4.30899 4.41621 4.46095 4.64142 4.69637 4.71673 4.82495 5.04698 5.10632 5.13041 5.19980 5.22387 5.30938 5.37083 5.41908 5.49910 5.51860 5.52179 5.64308 5.67596 5.69777 5.73687 5.84733 5.85650 5.89028 6.04382 6.08371 6.31507 6.41793 6.42903 6.51788 6.55823 6.60640 6.69090 6.87302 7.48166 7.51513 7.59669 7.82781 8.21111 8.33616 9.19210 9.80191 10.44911 11.35689 Molecular weight = 307.20amu Principal moments of inertia in cm(-1) A = 0.023597 B = 0.002908 C = 0.002712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.311073 B = 9627.921961 C =10323.775538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.011 4.011 3 Si 0.915 3.085 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.224 4.224 8 H 0.076 0.924 9 N -0.605 5.605 10 C 0.152 3.848 11 C -0.135 4.135 12 C -0.114 4.114 13 H 0.075 0.925 14 C 0.132 3.868 15 N -0.721 5.721 16 C 0.535 3.465 17 O -0.540 6.540 18 C -0.120 4.120 19 C -0.135 4.135 20 C 0.031 3.969 21 N -0.496 5.496 22 C 0.057 3.943 23 C 0.031 3.969 24 C -0.155 4.155 25 C -0.107 4.107 26 C 0.143 3.857 27 H 0.252 0.748 28 H 0.107 0.893 29 H 0.012 0.988 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.400 0.600 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.082 0.918 38 H 0.075 0.925 39 H 0.092 0.908 40 H 0.084 0.916 41 H 0.078 0.922 42 H 0.077 0.923 43 H 0.073 0.927 44 H 0.071 0.929 45 H 0.074 0.926 46 H 0.072 0.928 47 H 0.017 0.983 48 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.078 -20.540 3.252 22.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.207 4.207 3 Si 0.745 3.255 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.208 1.208 7 C -0.352 4.352 8 H 0.094 0.906 9 N -0.331 5.331 10 C 0.027 3.973 11 C -0.175 4.175 12 C -0.133 4.133 13 H 0.094 0.906 14 C 0.008 3.992 15 N -0.371 5.371 16 C 0.320 3.680 17 O -0.417 6.417 18 C -0.125 4.125 19 C -0.174 4.174 20 C -0.098 4.098 21 N -0.216 5.216 22 C -0.072 4.072 23 C -0.098 4.098 24 C -0.193 4.193 25 C -0.145 4.145 26 C 0.017 3.983 27 H 0.063 0.937 28 H 0.125 0.875 29 H 0.030 0.970 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.234 0.766 35 H 0.097 0.903 36 H 0.092 0.908 37 H 0.100 0.900 38 H 0.094 0.906 39 H 0.111 0.889 40 H 0.102 0.898 41 H 0.097 0.903 42 H 0.095 0.905 43 H 0.091 0.909 44 H 0.090 0.910 45 H 0.092 0.908 46 H 0.090 0.910 47 H 0.035 0.965 48 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 7.826 -21.136 2.276 22.653 hybrid contribution 0.526 1.984 0.895 2.239 sum 8.352 -19.152 3.171 21.133 Atomic orbital electron populations 1.69790 1.04901 1.24810 1.57562 1.24790 0.95735 0.97743 1.02387 0.86073 0.78503 0.83303 0.77615 1.21549 1.21622 1.20755 1.19071 0.90481 0.82500 1.43170 0.90564 1.44506 1.01995 0.99716 1.86842 1.21933 0.84660 0.92532 0.98163 1.23010 0.95516 0.98594 1.00342 1.22441 0.98324 0.94024 0.98559 0.90647 1.21482 0.90129 0.91038 0.96525 1.46088 1.41618 1.26466 1.22968 1.19904 0.82162 0.80716 0.85223 1.90699 1.59381 1.70964 1.20687 1.22648 0.95010 0.97420 0.97397 1.22920 1.01419 0.97153 0.95945 1.23077 0.96469 0.96500 0.93731 1.66442 1.02630 1.45101 1.07432 1.23385 0.99574 0.89848 0.94357 1.22633 0.92413 0.93884 1.00861 1.22592 1.00380 0.96767 0.99606 1.22175 0.93677 0.97797 1.00804 1.21316 0.93432 0.85995 0.97605 0.93695 0.87523 0.97019 0.91827 0.92120 0.91643 0.91209 0.76582 0.90284 0.90774 0.89958 0.90648 0.88940 0.89796 0.90309 0.90495 0.90868 0.91003 0.90777 0.90957 0.96543 0.95857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.76 10.09 55.49 0.56 -26.20 16 2 C -0.01 -0.31 5.49 -17.43 -0.10 -0.41 16 3 Si 0.91 21.97 29.55 -169.99 -5.02 16.94 16 4 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.22 -6.22 10.27 -15.06 -0.15 -6.38 16 8 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 9 N -0.60 -15.33 3.39 -170.08 -0.58 -15.91 16 10 C 0.15 3.64 5.89 -2.53 -0.01 3.62 16 11 C -0.14 -2.49 6.53 -24.58 -0.16 -2.65 16 12 C -0.11 -1.87 2.96 -88.79 -0.26 -2.13 16 13 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 14 C 0.13 1.92 5.02 -4.04 -0.02 1.90 16 15 N -0.72 -9.04 5.41 -60.29 -0.33 -9.36 16 16 C 0.54 7.07 6.79 -10.98 -0.07 6.99 16 17 O -0.54 -9.16 16.15 5.56 0.09 -9.07 16 18 C -0.12 -1.19 0.95 -152.87 -0.14 -1.33 16 19 C -0.14 -1.10 5.50 -25.13 -0.14 -1.24 16 20 C 0.03 0.24 6.20 -2.53 -0.02 0.22 16 21 N -0.50 -4.44 6.07 -228.98 -1.39 -5.83 16 22 C 0.06 0.59 5.46 -1.56 -0.01 0.58 16 23 C 0.03 0.23 5.84 -3.40 -0.02 0.21 16 24 C -0.15 -1.08 5.56 -25.64 -0.14 -1.22 16 25 C -0.11 -0.93 5.13 -25.11 -0.13 -1.06 16 26 C 0.14 2.86 6.75 -3.07 -0.02 2.84 16 27 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 28 H 0.11 2.89 5.87 -51.93 -0.31 2.59 16 29 H 0.01 0.30 8.14 -51.92 -0.42 -0.12 16 30 H 0.06 1.17 8.05 -51.93 -0.42 0.75 16 31 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 32 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.07 1.14 7.93 -51.93 -0.41 0.73 16 34 H 0.40 4.31 8.03 -40.82 -0.33 3.98 16 35 H 0.08 0.55 6.95 -51.93 -0.36 0.19 16 36 H 0.07 0.65 8.00 -51.93 -0.42 0.23 16 37 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.08 0.48 6.94 -51.93 -0.36 0.12 16 39 H 0.09 1.08 7.90 -51.93 -0.41 0.67 16 40 H 0.08 0.87 7.68 -51.92 -0.40 0.47 16 41 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 42 H 0.08 0.57 7.87 -51.93 -0.41 0.16 16 43 H 0.07 0.48 5.37 -51.93 -0.28 0.20 16 44 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.07 0.69 8.06 -51.93 -0.42 0.27 16 46 H 0.07 0.62 7.69 -51.93 -0.40 0.22 16 47 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 48 H 0.02 0.48 7.68 -51.93 -0.40 0.08 16 LS Contribution 361.62 15.07 5.45 5.45 Total: -1.00 -31.53 361.62 -10.86 -42.39 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -8.24 Total: 1.64 kcal Atomic # 6 Polarization: 1.36 SS G_CDS: -1.40 Total: -0.05 kcal Atomic # 7 Polarization: -55.57 SS G_CDS: -1.73 Total: -57.30 kcal Atomic # 8 Polarization: -9.16 SS G_CDS: 0.09 Total: -9.07 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.53 -10.86 -42.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028959418.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.713 kcal (2) G-P(sol) polarization free energy of solvation -31.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds