Wall clock time and date at job start Fri Apr 10 2020 14:29:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86802 * 120.00121 * 2 1 4 4 H 1.48494 * 109.47316 * 270.00646 * 3 2 1 5 5 H 1.48506 * 109.46979 * 30.00199 * 3 2 1 6 6 H 1.48499 * 109.47484 * 149.99874 * 3 2 1 7 7 C 1.38812 * 120.00268 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00341 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00004 * 0.02562 * 7 2 1 10 10 C 1.47426 * 125.64563 * 0.02562 * 9 7 2 11 11 C 1.54910 * 104.83287 * 155.83951 * 10 9 7 12 12 C 1.55158 * 101.58052 * 37.00499 * 11 10 9 13 13 H 1.08997 * 110.71594 * 83.04744 * 12 11 10 14 14 C 1.53000 * 110.71725 * 206.13487 * 12 11 10 15 15 N 1.46499 * 109.46840 * 185.00055 * 14 12 11 16 16 C 1.34779 * 119.99872 * 180.02562 * 15 14 12 17 17 O 1.21278 * 120.00071 * 359.97438 * 16 15 14 18 18 C 1.50703 * 119.99944 * 180.02562 * 16 15 14 19 19 C 1.54987 * 113.20160 * 64.16973 * 18 16 15 20 20 C 1.54063 * 104.76618 * 146.46868 * 19 18 16 21 21 N 1.48237 * 106.69518 * 1.01652 * 20 19 18 22 22 C 1.48803 * 105.17613 * 332.51427 * 21 20 19 23 23 C 1.47680 * 108.91130 * 88.16371 * 21 20 19 24 24 C 1.52995 * 109.28699 * 312.91390 * 23 21 20 25 25 C 1.54008 * 113.03023 * 301.17560 * 18 16 15 26 26 C 1.47018 * 125.65149 * 179.97438 * 9 7 2 27 27 H 0.97001 * 120.00425 * 359.97438 * 1 2 3 28 28 H 1.08993 * 110.37002 * 36.99615 * 10 9 7 29 29 H 1.09008 * 110.36676 * 274.67726 * 10 9 7 30 30 H 1.09007 * 111.00274 * 278.93306 * 11 10 9 31 31 H 1.08995 * 111.03743 * 155.09955 * 11 10 9 32 32 H 1.09002 * 109.47398 * 305.00381 * 14 12 11 33 33 H 1.09001 * 109.47194 * 65.00562 * 14 12 11 34 34 H 0.97000 * 120.00420 * 0.02562 * 15 14 12 35 35 H 1.09003 * 110.38114 * 265.29082 * 19 18 16 36 36 H 1.08999 * 110.38016 * 27.64983 * 19 18 16 37 37 H 1.08999 * 110.01145 * 241.70965 * 20 19 18 38 38 H 1.09003 * 110.05337 * 120.34855 * 20 19 18 39 39 H 1.08998 * 110.93367 * 284.56271 * 22 21 20 40 40 H 1.09008 * 110.96401 * 160.90833 * 22 21 20 41 41 H 1.09000 * 109.50285 * 72.85708 * 23 21 20 42 42 H 1.08997 * 109.50470 * 192.97155 * 23 21 20 43 43 H 1.09000 * 109.36726 * 64.97744 * 24 23 21 44 44 H 1.09000 * 109.36766 * 184.72109 * 24 23 21 45 45 H 1.08997 * 109.63486 * 291.83574 * 25 18 16 46 46 H 1.08999 * 109.63735 * 52.42763 * 25 18 16 47 47 H 1.09000 * 109.88513 * 61.67495 * 26 9 7 48 48 H 1.09000 * 109.87969 * 300.51296 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4975 2.0465 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0016 10 6 -0.1415 -2.5332 -0.0028 11 6 -0.4012 -3.9316 -0.6165 12 6 0.7785 -4.7524 -0.0317 13 1 0.5440 -5.1019 0.9737 14 6 1.1238 -5.9302 -0.9452 15 7 2.1570 -6.7530 -0.3115 16 6 2.6211 -7.8525 -0.9379 17 8 2.1830 -8.1609 -2.0260 18 6 3.6836 -8.6993 -0.2858 19 6 3.2107 -9.3647 1.0316 20 6 3.9445 -10.7187 1.0730 21 7 4.7927 -10.7807 -0.1411 22 6 4.1018 -9.9246 -1.1431 23 6 6.1031 -10.1690 0.1587 24 6 5.8858 -8.8344 0.8745 25 6 4.9752 -7.9173 0.0175 26 6 1.9318 -3.7275 -0.0028 27 1 -0.4851 0.8400 0.0004 28 1 -0.5989 -1.7581 -0.6177 29 1 -0.5280 -2.4880 1.0155 30 1 -0.3508 -3.8961 -1.7049 31 1 -1.3588 -4.3328 -0.2848 32 1 0.2316 -6.5332 -1.1136 33 1 1.4934 -5.5539 -1.8991 34 1 2.5072 -6.5066 0.5588 35 1 3.4935 -8.7534 1.8885 36 1 2.1317 -9.5183 1.0133 37 1 3.2221 -11.5349 1.0654 38 1 4.5665 -10.7796 1.9661 39 1 3.2272 -10.4311 -1.5512 40 1 4.7845 -9.6279 -1.9395 41 1 6.6781 -10.8367 0.8003 42 1 6.6466 -9.9991 -0.7707 43 1 5.4205 -9.0155 1.8434 44 1 6.8472 -8.3424 1.0216 45 1 5.4681 -7.6478 -0.9166 46 1 4.7340 -7.0159 0.5809 47 1 2.5277 -3.8655 0.8994 48 1 2.5588 -3.8497 -0.8860 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028959418.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:29:09 Heat of formation + Delta-G solvation = -27.945182 kcal Electronic energy + Delta-G solvation = -26227.905002 eV Core-core repulsion = 22702.980901 eV Total energy + Delta-G solvation = -3524.924101 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 307.200 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.27356 -40.21645 -39.14791 -36.10097 -34.43413 -33.30241 -32.92102 -31.53829 -30.24554 -29.83385 -27.38940 -25.87166 -25.29536 -23.88474 -22.71628 -22.05955 -21.35177 -21.10946 -20.13513 -18.89249 -18.19396 -17.36897 -17.14883 -16.89100 -16.59588 -15.99675 -15.84349 -15.57113 -15.10828 -14.92110 -14.42940 -14.29245 -13.94068 -13.87318 -13.67380 -13.55838 -13.54200 -13.40221 -13.16360 -12.84316 -12.69604 -12.68477 -12.50544 -12.05236 -12.02654 -11.89075 -11.84193 -11.76806 -11.66874 -11.60040 -11.48250 -11.38213 -10.76598 -10.71387 -10.12809 -9.50761 -8.89249 -7.78634 -5.22878 1.45780 1.47612 1.53989 1.56081 2.12293 2.48610 2.96050 3.31060 3.44528 3.55756 3.63190 3.68229 3.77720 3.95917 3.97957 4.04951 4.08421 4.11211 4.18129 4.39858 4.43271 4.46063 4.55505 4.62910 4.64292 4.68441 4.77771 4.82065 4.89305 4.90962 4.94649 4.97417 5.02829 5.04706 5.11188 5.12016 5.17638 5.28174 5.32074 5.41675 5.47128 5.64823 5.77070 5.81719 5.99656 6.30867 6.50012 7.10186 7.18087 7.78084 8.41415 9.23296 Molecular weight = 307.20amu Principal moments of inertia in cm(-1) A = 0.023597 B = 0.002908 C = 0.002712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.311073 B = 9627.921961 C =10323.775538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.068 4.068 3 Si 0.979 3.021 4 H -0.287 1.287 5 H -0.293 1.293 6 H -0.269 1.269 7 C -0.240 4.240 8 H 0.080 0.920 9 N -0.628 5.628 10 C 0.152 3.848 11 C -0.123 4.123 12 C -0.093 4.093 13 H 0.097 0.903 14 C 0.143 3.857 15 N -0.712 5.712 16 C 0.534 3.466 17 O -0.582 6.582 18 C -0.116 4.116 19 C -0.129 4.129 20 C 0.031 3.969 21 N -0.505 5.505 22 C 0.058 3.942 23 C 0.029 3.971 24 C -0.147 4.147 25 C -0.106 4.106 26 C 0.139 3.861 27 H 0.247 0.753 28 H 0.070 0.930 29 H -0.009 1.009 30 H 0.061 0.939 31 H 0.089 0.911 32 H 0.074 0.926 33 H 0.051 0.949 34 H 0.412 0.588 35 H 0.098 0.902 36 H 0.067 0.933 37 H 0.081 0.919 38 H 0.095 0.905 39 H 0.072 0.928 40 H 0.076 0.924 41 H 0.094 0.906 42 H 0.073 0.927 43 H 0.085 0.915 44 H 0.083 0.917 45 H 0.063 0.937 46 H 0.076 0.924 47 H 0.029 0.971 48 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.461 -21.843 4.807 24.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.260 4.260 3 Si 0.808 3.192 4 H -0.214 1.214 5 H -0.220 1.220 6 H -0.194 1.194 7 C -0.369 4.369 8 H 0.098 0.902 9 N -0.355 5.355 10 C 0.027 3.973 11 C -0.162 4.162 12 C -0.112 4.112 13 H 0.116 0.884 14 C 0.019 3.981 15 N -0.363 5.363 16 C 0.321 3.679 17 O -0.462 6.462 18 C -0.121 4.121 19 C -0.168 4.168 20 C -0.097 4.097 21 N -0.225 5.225 22 C -0.071 4.071 23 C -0.099 4.099 24 C -0.186 4.186 25 C -0.144 4.144 26 C 0.014 3.986 27 H 0.057 0.943 28 H 0.088 0.912 29 H 0.009 0.991 30 H 0.079 0.921 31 H 0.108 0.892 32 H 0.092 0.908 33 H 0.069 0.931 34 H 0.248 0.752 35 H 0.116 0.884 36 H 0.086 0.914 37 H 0.100 0.900 38 H 0.113 0.887 39 H 0.091 0.909 40 H 0.095 0.905 41 H 0.112 0.888 42 H 0.091 0.909 43 H 0.103 0.897 44 H 0.101 0.899 45 H 0.081 0.919 46 H 0.095 0.905 47 H 0.047 0.953 48 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 9.239 -22.467 3.858 24.597 hybrid contribution 0.114 2.358 0.387 2.392 sum 9.354 -20.110 4.244 22.581 Atomic orbital electron populations 1.70049 1.06200 1.25028 1.58576 1.25631 0.96646 1.00990 1.02730 0.85063 0.77645 0.79080 0.77455 1.21378 1.21961 1.19403 1.19449 0.90994 0.83888 1.42584 0.90249 1.44827 1.02829 1.00995 1.86820 1.21724 0.84077 0.94836 0.96632 1.22853 0.97847 0.95571 0.99954 1.22275 0.95693 0.93274 0.99927 0.88445 1.21203 0.90958 0.90628 0.95276 1.45963 1.41043 1.25989 1.23290 1.20470 0.82193 0.80624 0.84661 1.90681 1.60909 1.71987 1.22628 1.22591 0.94548 0.96883 0.98053 1.22927 1.01138 0.97502 0.95275 1.23136 0.96602 0.96111 0.93862 1.66428 1.03366 1.44987 1.07757 1.23268 0.98858 0.90185 0.94827 1.22702 0.91629 0.94435 1.01147 1.22555 1.00531 0.96008 0.99464 1.22198 0.93171 0.98242 1.00800 1.21484 0.94696 0.84677 0.97699 0.94327 0.91191 0.99075 0.92072 0.89212 0.90802 0.93100 0.75208 0.88397 0.91371 0.90025 0.88651 0.90912 0.90533 0.88796 0.90879 0.89675 0.89885 0.91871 0.90523 0.95331 0.96341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.50 10.09 21.65 0.22 -56.28 16 2 C -0.07 -3.82 5.49 84.86 0.47 -3.36 16 3 Si 0.98 45.51 29.55 68.60 2.03 47.54 16 4 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 5 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 6 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 7 C -0.24 -13.44 10.27 84.03 0.86 -12.57 16 8 H 0.08 4.26 7.83 -2.91 -0.02 4.23 16 9 N -0.63 -32.02 3.39 -692.01 -2.35 -34.37 16 10 C 0.15 7.40 5.89 86.85 0.51 7.91 16 11 C -0.12 -4.38 6.53 31.99 0.21 -4.17 16 12 C -0.09 -2.84 2.96 -9.61 -0.03 -2.86 16 13 H 0.10 2.63 8.14 -2.39 -0.02 2.61 16 14 C 0.14 3.95 5.02 86.38 0.43 4.38 16 15 N -0.71 -16.52 5.41 -463.05 -2.51 -19.03 16 16 C 0.53 13.59 6.79 87.66 0.59 14.19 16 17 O -0.58 -19.78 16.15 -3.02 -0.05 -19.83 16 18 C -0.12 -2.13 0.95 -51.12 -0.05 -2.18 16 19 C -0.13 -1.77 5.50 31.63 0.17 -1.60 16 20 C 0.03 0.40 6.20 86.40 0.54 0.93 16 21 N -0.50 -8.17 6.07 -878.36 -5.33 -13.50 16 22 C 0.06 1.17 5.46 86.72 0.47 1.64 16 23 C 0.03 0.36 5.84 86.15 0.50 0.86 16 24 C -0.15 -1.60 5.56 31.30 0.17 -1.43 16 25 C -0.11 -1.63 5.13 31.64 0.16 -1.47 16 26 C 0.14 5.44 6.75 86.73 0.59 6.02 16 27 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 28 H 0.07 3.93 5.87 -2.39 -0.01 3.92 16 29 H -0.01 -0.45 8.14 -2.38 -0.02 -0.47 16 30 H 0.06 2.21 8.05 -2.38 -0.02 2.19 16 31 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 32 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.05 1.62 7.93 -2.39 -0.02 1.60 16 34 H 0.41 7.71 8.03 -92.71 -0.74 6.97 16 35 H 0.10 0.99 6.95 -2.39 -0.02 0.97 16 36 H 0.07 1.04 8.00 -2.39 -0.02 1.02 16 37 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.10 0.85 6.94 -2.39 -0.02 0.84 16 39 H 0.07 1.73 7.90 -2.39 -0.02 1.72 16 40 H 0.08 1.61 7.68 -2.38 -0.02 1.59 16 41 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 42 H 0.07 0.96 7.87 -2.39 -0.02 0.94 16 43 H 0.08 0.76 5.37 -2.39 -0.01 0.74 16 44 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 45 H 0.06 1.11 8.06 -2.39 -0.02 1.09 16 46 H 0.08 1.11 7.69 -2.39 -0.02 1.10 16 47 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 48 H 0.02 0.75 7.68 -2.39 -0.02 0.73 16 Total: -1.00 -69.88 361.62 -2.18 -72.06 By element: Atomic # 1 Polarization: 16.92 SS G_CDS: 0.20 Total: 17.11 kcal Atomic # 6 Polarization: 0.68 SS G_CDS: 5.61 Total: 6.28 kcal Atomic # 7 Polarization: -113.21 SS G_CDS: -9.97 Total: -123.17 kcal Atomic # 8 Polarization: -19.78 SS G_CDS: -0.05 Total: -19.83 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal Total: -69.88 -2.18 -72.06 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028959418.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.119 kcal (2) G-P(sol) polarization free energy of solvation -69.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds