Wall clock time and date at job start Fri Apr 10 2020 14:27:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86804 * 120.00027 * 2 1 4 4 H 1.48495 * 109.47247 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47357 * 300.00193 * 3 2 1 6 6 H 1.48504 * 109.46833 * 60.00085 * 3 2 1 7 7 C 1.38816 * 120.00557 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00251 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99444 * 359.97438 * 7 2 1 10 10 C 1.46494 * 119.99866 * 180.02562 * 9 7 2 11 11 H 1.09007 * 112.90959 * 23.74984 * 10 9 7 12 12 C 1.53779 * 113.61663 * 155.00121 * 10 9 7 13 13 C 1.53780 * 87.08450 * 89.11766 * 12 10 9 14 14 H 1.09008 * 113.60943 * 270.80457 * 13 12 10 15 15 C 1.52996 * 113.61961 * 139.98540 * 13 12 10 16 16 N 1.46491 * 109.47341 * 175.00263 * 15 13 12 17 17 C 1.34776 * 120.00083 * 179.97438 * 16 15 13 18 18 O 1.21284 * 120.00023 * 359.97438 * 17 16 15 19 19 C 1.50703 * 120.00232 * 179.97438 * 17 16 15 20 20 H 1.09005 * 109.68663 * 60.32445 * 19 17 16 21 21 C 1.53146 * 109.57555 * 299.99992 * 19 17 16 22 22 N 1.46903 * 109.36701 * 240.19178 * 21 19 17 23 23 C 1.46946 * 111.06219 * 298.00192 * 22 21 19 24 24 C 1.53132 * 109.34529 * 61.95927 * 23 22 21 25 25 C 1.53383 * 109.58145 * 180.65936 * 19 17 16 26 26 C 1.53384 * 108.59920 * 60.83810 * 25 19 17 27 27 C 1.46948 * 111.05534 * 62.00401 * 22 21 19 28 28 C 1.53779 * 87.08061 * 25.43266 * 13 12 10 29 29 H 0.97002 * 120.00052 * 359.97438 * 1 2 3 30 30 H 0.97003 * 120.00314 * 0.02562 * 9 7 2 31 31 H 1.09002 * 113.61416 * 334.56767 * 12 10 9 32 32 H 1.09003 * 113.61913 * 203.66302 * 12 10 9 33 33 H 1.09000 * 109.46980 * 54.99528 * 15 13 12 34 34 H 1.09002 * 109.46781 * 294.99827 * 15 13 12 35 35 H 0.97008 * 120.00480 * 359.97438 * 16 15 13 36 36 H 1.08994 * 109.49114 * 0.16170 * 21 19 17 37 37 H 1.08998 * 109.48659 * 120.22912 * 21 19 17 38 38 H 1.08993 * 109.48885 * 302.00132 * 23 22 21 39 39 H 1.08999 * 109.49435 * 181.92309 * 23 22 21 40 40 H 1.09002 * 109.57200 * 240.24773 * 24 23 22 41 41 H 1.08999 * 109.67685 * 119.93534 * 24 23 22 42 42 H 1.09001 * 110.10958 * 299.40296 * 25 19 17 43 43 H 1.09001 * 109.58028 * 178.80813 * 26 25 19 44 44 H 1.09005 * 109.58132 * 299.19897 * 26 25 19 45 45 H 1.08996 * 109.49059 * 58.00382 * 27 22 21 46 46 H 1.09000 * 109.48841 * 178.07627 * 27 22 21 47 47 H 1.08998 * 113.61264 * 89.11705 * 28 13 12 48 48 H 1.09002 * 113.61763 * 220.02191 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8914 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0005 11 1 3.0662 -3.5646 0.4039 12 6 1.2603 -4.8287 0.5949 13 6 0.7206 -5.0791 -0.8231 14 1 -0.1910 -4.5251 -1.0475 15 6 0.6197 -6.5616 -1.1877 16 7 -0.0120 -6.6993 -2.5022 17 6 -0.2058 -7.9234 -3.0318 18 8 0.1432 -8.9109 -2.4203 19 6 -0.8563 -8.0652 -4.3839 20 1 -0.2561 -7.5526 -5.1357 21 6 -2.2602 -7.4545 -4.3444 22 7 -3.2513 -8.4906 -4.6644 23 6 -3.0464 -9.0162 -6.0213 24 6 -1.6647 -9.6706 -6.1087 25 6 -0.9729 -9.5513 -4.7449 26 6 -1.8462 -10.2437 -3.6910 27 6 -3.2227 -9.5733 -3.6712 28 6 1.9992 -4.4021 -1.3444 29 1 -0.4850 0.8401 0.0004 30 1 0.3556 -2.3881 -0.0005 31 1 0.4939 -4.5189 1.3054 32 1 1.8871 -5.6366 0.9724 33 1 0.0194 -7.0796 -0.4399 34 1 1.6185 -6.9972 -1.2173 35 1 -0.2909 -5.9095 -2.9916 36 1 -2.4568 -7.0587 -3.3481 37 1 -2.3271 -6.6491 -5.0758 38 1 -3.1082 -8.1997 -6.7407 39 1 -3.8144 -9.7568 -6.2443 40 1 -1.0678 -9.1635 -6.8667 41 1 -1.7729 -10.7226 -6.3725 42 1 0.0170 -10.0059 -4.7857 43 1 -1.9572 -11.2981 -3.9441 44 1 -1.3797 -10.1488 -2.7104 45 1 -3.4130 -9.1624 -2.6798 46 1 -3.9893 -10.3093 -3.9136 47 1 2.8281 -5.0933 -1.4970 48 1 1.8294 -3.7478 -2.1995 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086367959.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:27:33 Heat of formation + Delta-G solvation = -4.293975 kcal Electronic energy + Delta-G solvation = -25777.591000 eV Core-core repulsion = 22253.692493 eV Total energy + Delta-G solvation = -3523.898508 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 307.200 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.47328 -39.25805 -38.30178 -34.75231 -33.28407 -32.47747 -31.72320 -31.16401 -30.09489 -27.36046 -25.08695 -24.29189 -23.56866 -23.27512 -23.13882 -21.70052 -20.54493 -18.50786 -17.82382 -17.46256 -17.20112 -16.77702 -16.61144 -15.79308 -15.40662 -15.11497 -14.83260 -14.18354 -13.93638 -13.54826 -13.36189 -13.26593 -13.06571 -12.92978 -12.51799 -12.44740 -12.38867 -12.32176 -12.13535 -11.94122 -11.75501 -11.40938 -11.27338 -11.06420 -10.88167 -10.62390 -10.51729 -10.46238 -10.16568 -10.01600 -9.72640 -9.69585 -9.41597 -9.00503 -8.91110 -8.49959 -7.02948 -5.83574 -3.12665 2.57899 3.14355 3.39516 3.45625 3.47657 3.68526 4.20887 4.35725 4.53275 4.56268 4.73887 4.83470 4.88709 4.89162 4.99762 5.01985 5.04383 5.12964 5.17894 5.22495 5.31626 5.42707 5.48423 5.56476 5.59970 5.65783 5.67533 5.71613 5.83197 5.84437 5.89887 5.91703 5.94616 6.07863 6.16933 6.18768 6.34621 6.43583 6.56951 6.71509 6.76149 6.78064 6.87535 7.01366 7.49443 7.66935 8.19529 8.35575 9.46400 10.03751 10.37964 11.38888 Molecular weight = 307.20amu Principal moments of inertia in cm(-1) A = 0.024257 B = 0.002552 C = 0.002428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.039030 B =10967.424818 C =11528.462694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.013 4.013 3 Si 0.908 3.092 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.242 4.242 8 H 0.073 0.927 9 N -0.706 5.706 10 C 0.167 3.833 11 H 0.062 0.938 12 C -0.148 4.148 13 C -0.119 4.119 14 H 0.093 0.907 15 C 0.131 3.869 16 N -0.723 5.723 17 C 0.518 3.482 18 O -0.542 6.542 19 C -0.142 4.142 20 H 0.099 0.901 21 C 0.060 3.940 22 N -0.527 5.527 23 C 0.051 3.949 24 C -0.151 4.151 25 C -0.064 4.064 26 C -0.160 4.160 27 C 0.051 3.949 28 C -0.168 4.168 29 H 0.255 0.745 30 H 0.385 0.615 31 H 0.068 0.932 32 H 0.076 0.924 33 H 0.062 0.938 34 H 0.065 0.935 35 H 0.402 0.598 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.066 0.934 41 H 0.068 0.932 42 H 0.082 0.918 43 H 0.061 0.939 44 H 0.094 0.906 45 H 0.074 0.926 46 H 0.074 0.926 47 H 0.067 0.933 48 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.847 -20.114 -11.238 23.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.209 4.209 3 Si 0.739 3.261 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.373 4.373 8 H 0.090 0.910 9 N -0.344 5.344 10 C 0.055 3.945 11 H 0.080 0.920 12 C -0.188 4.188 13 C -0.138 4.138 14 H 0.111 0.889 15 C 0.008 3.992 16 N -0.374 5.374 17 C 0.304 3.696 18 O -0.420 6.420 19 C -0.165 4.165 20 H 0.117 0.883 21 C -0.069 4.069 22 N -0.247 5.247 23 C -0.077 4.077 24 C -0.191 4.191 25 C -0.084 4.084 26 C -0.199 4.199 27 C -0.077 4.077 28 C -0.209 4.209 29 H 0.065 0.935 30 H 0.219 0.781 31 H 0.087 0.913 32 H 0.095 0.905 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.237 0.763 36 H 0.101 0.899 37 H 0.105 0.895 38 H 0.095 0.905 39 H 0.094 0.906 40 H 0.084 0.916 41 H 0.087 0.913 42 H 0.100 0.900 43 H 0.080 0.920 44 H 0.113 0.887 45 H 0.092 0.908 46 H 0.093 0.907 47 H 0.085 0.915 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.976 -20.402 -10.742 23.588 hybrid contribution 0.870 0.919 -0.386 1.323 sum -4.106 -19.483 -11.128 22.810 Atomic orbital electron populations 1.69666 1.05132 1.25698 1.57517 1.24767 0.95547 0.97800 1.02782 0.86104 0.78819 0.83971 0.77212 1.20499 1.21827 1.21810 1.19334 0.91145 0.83952 1.42869 0.90950 1.42177 1.05687 0.99443 1.87129 1.21051 0.95098 0.85598 0.92742 0.91990 1.23445 1.00501 0.99687 0.95150 1.22707 0.99550 0.92945 0.98599 0.88888 1.21466 0.97514 0.96995 0.83210 1.46109 1.62017 1.08139 1.21114 1.20493 0.78537 0.83185 0.87419 1.90621 1.51090 1.37382 1.62869 1.22130 0.99388 0.99265 0.95701 0.88278 1.22266 0.86921 0.94542 1.03167 1.62505 1.47247 1.12399 1.02525 1.22228 0.95652 0.99407 0.90441 1.22313 0.97923 1.01774 0.97040 1.20873 0.99846 0.93120 0.94552 1.22462 0.96404 0.99295 1.01705 1.22238 0.96429 0.93108 0.95955 1.23889 0.95661 0.99618 1.01777 0.93466 0.78106 0.91321 0.90508 0.91937 0.91698 0.76350 0.89918 0.89524 0.90498 0.90579 0.91550 0.91317 0.89950 0.92044 0.88730 0.90779 0.90744 0.91470 0.91522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.54 13.06 55.49 0.72 -26.81 16 2 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 3 Si 0.91 22.00 29.55 -169.99 -5.02 16.97 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 7 C -0.24 -6.57 9.97 -15.06 -0.15 -6.72 16 8 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 9 N -0.71 -17.14 5.31 -52.64 -0.28 -17.42 16 10 C 0.17 3.21 4.56 -67.12 -0.31 2.90 16 11 H 0.06 1.20 8.10 -51.93 -0.42 0.78 16 12 C -0.15 -2.33 7.39 -25.92 -0.19 -2.53 16 13 C -0.12 -1.73 3.63 -89.81 -0.33 -2.06 16 14 H 0.09 1.45 8.14 -51.92 -0.42 1.03 16 15 C 0.13 1.71 5.51 -4.05 -0.02 1.69 16 16 N -0.72 -8.40 5.30 -60.30 -0.32 -8.72 16 17 C 0.52 6.34 6.59 -10.98 -0.07 6.26 16 18 O -0.54 -8.37 13.75 5.55 0.08 -8.29 16 19 C -0.14 -1.34 2.60 -91.50 -0.24 -1.58 16 20 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 21 C 0.06 0.54 5.60 -3.75 -0.02 0.52 16 22 N -0.53 -4.83 5.22 -234.29 -1.22 -6.05 16 23 C 0.05 0.38 6.09 -3.73 -0.02 0.36 16 24 C -0.15 -1.12 5.75 -26.46 -0.15 -1.27 16 25 C -0.06 -0.61 2.59 -90.02 -0.23 -0.84 16 26 C -0.16 -1.60 5.43 -26.47 -0.14 -1.75 16 27 C 0.05 0.47 6.09 -3.73 -0.02 0.45 16 28 C -0.17 -2.74 7.43 -25.92 -0.19 -2.93 16 29 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 30 H 0.38 9.88 7.90 -40.82 -0.32 9.55 16 31 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.08 1.06 8.10 -51.93 -0.42 0.64 16 33 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 34 H 0.06 0.89 7.84 -51.93 -0.41 0.48 16 35 H 0.40 4.08 8.38 -40.82 -0.34 3.74 16 36 H 0.08 0.81 7.45 -51.93 -0.39 0.42 16 37 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 41 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.08 0.87 8.12 -51.93 -0.42 0.45 16 43 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.09 1.19 5.59 -51.93 -0.29 0.90 16 45 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 47 H 0.07 0.99 7.90 -51.93 -0.41 0.58 16 48 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 369.62 15.07 5.57 5.57 Total: -1.00 -30.62 369.62 -11.13 -41.75 By element: Atomic # 1 Polarization: 19.43 SS G_CDS: -8.46 Total: 10.96 kcal Atomic # 6 Polarization: -5.77 SS G_CDS: -2.19 Total: -7.96 kcal Atomic # 7 Polarization: -57.91 SS G_CDS: -1.10 Total: -59.01 kcal Atomic # 8 Polarization: -8.37 SS G_CDS: 0.08 Total: -8.29 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -30.62 -11.13 -41.75 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086367959.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.456 kcal (2) G-P(sol) polarization free energy of solvation -30.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds