Wall clock time and date at job start Fri Apr 10 2020 14:27:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86804 * 120.00027 * 2 1 4 4 H 1.48495 * 109.47247 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47357 * 300.00193 * 3 2 1 6 6 H 1.48504 * 109.46833 * 60.00085 * 3 2 1 7 7 C 1.38816 * 120.00557 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00251 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99444 * 359.97438 * 7 2 1 10 10 C 1.46494 * 119.99866 * 180.02562 * 9 7 2 11 11 H 1.09007 * 112.90959 * 23.74984 * 10 9 7 12 12 C 1.53779 * 113.61663 * 155.00121 * 10 9 7 13 13 C 1.53780 * 87.08450 * 89.11766 * 12 10 9 14 14 H 1.09008 * 113.60943 * 270.80457 * 13 12 10 15 15 C 1.52996 * 113.61961 * 139.98540 * 13 12 10 16 16 N 1.46491 * 109.47341 * 175.00263 * 15 13 12 17 17 C 1.34776 * 120.00083 * 179.97438 * 16 15 13 18 18 O 1.21284 * 120.00023 * 359.97438 * 17 16 15 19 19 C 1.50703 * 120.00232 * 179.97438 * 17 16 15 20 20 H 1.09005 * 109.68663 * 60.32445 * 19 17 16 21 21 C 1.53146 * 109.57555 * 299.99992 * 19 17 16 22 22 N 1.46903 * 109.36701 * 240.19178 * 21 19 17 23 23 C 1.46946 * 111.06219 * 298.00192 * 22 21 19 24 24 C 1.53132 * 109.34529 * 61.95927 * 23 22 21 25 25 C 1.53383 * 109.58145 * 180.65936 * 19 17 16 26 26 C 1.53384 * 108.59920 * 60.83810 * 25 19 17 27 27 C 1.46948 * 111.05534 * 62.00401 * 22 21 19 28 28 C 1.53779 * 87.08061 * 25.43266 * 13 12 10 29 29 H 0.97002 * 120.00052 * 359.97438 * 1 2 3 30 30 H 0.97003 * 120.00314 * 0.02562 * 9 7 2 31 31 H 1.09002 * 113.61416 * 334.56767 * 12 10 9 32 32 H 1.09003 * 113.61913 * 203.66302 * 12 10 9 33 33 H 1.09000 * 109.46980 * 54.99528 * 15 13 12 34 34 H 1.09002 * 109.46781 * 294.99827 * 15 13 12 35 35 H 0.97008 * 120.00480 * 359.97438 * 16 15 13 36 36 H 1.08994 * 109.49114 * 0.16170 * 21 19 17 37 37 H 1.08998 * 109.48659 * 120.22912 * 21 19 17 38 38 H 1.08993 * 109.48885 * 302.00132 * 23 22 21 39 39 H 1.08999 * 109.49435 * 181.92309 * 23 22 21 40 40 H 1.09002 * 109.57200 * 240.24773 * 24 23 22 41 41 H 1.08999 * 109.67685 * 119.93534 * 24 23 22 42 42 H 1.09001 * 110.10958 * 299.40296 * 25 19 17 43 43 H 1.09001 * 109.58028 * 178.80813 * 26 25 19 44 44 H 1.09005 * 109.58132 * 299.19897 * 26 25 19 45 45 H 1.08996 * 109.49059 * 58.00382 * 27 22 21 46 46 H 1.09000 * 109.48841 * 178.07627 * 27 22 21 47 47 H 1.08998 * 113.61264 * 89.11705 * 28 13 12 48 48 H 1.09002 * 113.61763 * 220.02191 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8914 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0005 11 1 3.0662 -3.5646 0.4039 12 6 1.2603 -4.8287 0.5949 13 6 0.7206 -5.0791 -0.8231 14 1 -0.1910 -4.5251 -1.0475 15 6 0.6197 -6.5616 -1.1877 16 7 -0.0120 -6.6993 -2.5022 17 6 -0.2058 -7.9234 -3.0318 18 8 0.1432 -8.9109 -2.4203 19 6 -0.8563 -8.0652 -4.3839 20 1 -0.2561 -7.5526 -5.1357 21 6 -2.2602 -7.4545 -4.3444 22 7 -3.2513 -8.4906 -4.6644 23 6 -3.0464 -9.0162 -6.0213 24 6 -1.6647 -9.6706 -6.1087 25 6 -0.9729 -9.5513 -4.7449 26 6 -1.8462 -10.2437 -3.6910 27 6 -3.2227 -9.5733 -3.6712 28 6 1.9992 -4.4021 -1.3444 29 1 -0.4850 0.8401 0.0004 30 1 0.3556 -2.3881 -0.0005 31 1 0.4939 -4.5189 1.3054 32 1 1.8871 -5.6366 0.9724 33 1 0.0194 -7.0796 -0.4399 34 1 1.6185 -6.9972 -1.2173 35 1 -0.2909 -5.9095 -2.9916 36 1 -2.4568 -7.0587 -3.3481 37 1 -2.3271 -6.6491 -5.0758 38 1 -3.1082 -8.1997 -6.7407 39 1 -3.8144 -9.7568 -6.2443 40 1 -1.0678 -9.1635 -6.8667 41 1 -1.7729 -10.7226 -6.3725 42 1 0.0170 -10.0059 -4.7857 43 1 -1.9572 -11.2981 -3.9441 44 1 -1.3797 -10.1488 -2.7104 45 1 -3.4130 -9.1624 -2.6798 46 1 -3.9893 -10.3093 -3.9136 47 1 2.8281 -5.0933 -1.4970 48 1 1.8294 -3.7478 -2.1995 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086367959.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:27:33 Heat of formation + Delta-G solvation = -25.203690 kcal Electronic energy + Delta-G solvation = -25778.497714 eV Core-core repulsion = 22253.692493 eV Total energy + Delta-G solvation = -3524.805221 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 307.200 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.25990 -40.42258 -39.47116 -36.04270 -35.00595 -33.22096 -32.63886 -31.85183 -31.82398 -28.63564 -26.44425 -25.81486 -24.79723 -24.03557 -23.81639 -23.00535 -21.51254 -19.87645 -19.35263 -18.58488 -18.19520 -17.60011 -17.35301 -16.79003 -16.67846 -16.33085 -16.10392 -15.70278 -15.40683 -14.78734 -14.62203 -14.40113 -13.94841 -13.86385 -13.69287 -13.32953 -13.17970 -13.13559 -13.08123 -13.02924 -12.92926 -12.87279 -12.61412 -12.49512 -12.13351 -12.04770 -12.01278 -11.54039 -11.48429 -11.32916 -11.11984 -10.98420 -10.85785 -10.50065 -10.03135 -9.21003 -9.00157 -7.95596 -5.23842 1.48130 1.48580 1.58529 1.61992 2.19830 2.55580 3.01236 3.37113 3.46833 3.61480 3.70911 3.78243 3.81597 3.89351 4.03612 4.08013 4.15613 4.22305 4.27753 4.32090 4.34025 4.38947 4.40322 4.48394 4.62919 4.72200 4.76140 4.81736 4.91686 4.96169 4.98405 5.01167 5.08068 5.11040 5.13793 5.19569 5.20458 5.28376 5.34443 5.41004 5.50827 5.57183 5.65957 6.06573 6.13410 6.28256 6.55225 7.24191 7.33333 8.10166 8.32608 9.27816 Molecular weight = 307.20amu Principal moments of inertia in cm(-1) A = 0.024257 B = 0.002552 C = 0.002428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.039030 B =10967.424818 C =11528.462694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.075 4.075 3 Si 0.971 3.029 4 H -0.267 1.267 5 H -0.293 1.293 6 H -0.295 1.295 7 C -0.241 4.241 8 H 0.076 0.924 9 N -0.720 5.720 10 C 0.144 3.856 11 H 0.059 0.941 12 C -0.136 4.136 13 C -0.101 4.101 14 H 0.082 0.918 15 C 0.142 3.858 16 N -0.718 5.718 17 C 0.515 3.485 18 O -0.576 6.576 19 C -0.135 4.135 20 H 0.118 0.882 21 C 0.062 3.938 22 N -0.535 5.535 23 C 0.050 3.950 24 C -0.143 4.143 25 C -0.067 4.067 26 C -0.157 4.157 27 C 0.054 3.946 28 C -0.152 4.152 29 H 0.251 0.749 30 H 0.375 0.625 31 H 0.057 0.943 32 H 0.104 0.896 33 H 0.059 0.941 34 H 0.065 0.935 35 H 0.411 0.589 36 H 0.070 0.930 37 H 0.104 0.896 38 H 0.088 0.912 39 H 0.084 0.916 40 H 0.077 0.923 41 H 0.075 0.925 42 H 0.068 0.932 43 H 0.068 0.932 44 H 0.065 0.935 45 H 0.060 0.940 46 H 0.086 0.914 47 H 0.090 0.910 48 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.440 -20.893 -12.738 24.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.267 4.267 3 Si 0.801 3.199 4 H -0.191 1.191 5 H -0.220 1.220 6 H -0.222 1.222 7 C -0.373 4.373 8 H 0.094 0.906 9 N -0.358 5.358 10 C 0.034 3.966 11 H 0.077 0.923 12 C -0.175 4.175 13 C -0.120 4.120 14 H 0.100 0.900 15 C 0.018 3.982 16 N -0.369 5.369 17 C 0.303 3.697 18 O -0.456 6.456 19 C -0.157 4.157 20 H 0.135 0.865 21 C -0.067 4.067 22 N -0.255 5.255 23 C -0.078 4.078 24 C -0.182 4.182 25 C -0.087 4.087 26 C -0.196 4.196 27 C -0.075 4.075 28 C -0.193 4.193 29 H 0.060 0.940 30 H 0.207 0.793 31 H 0.076 0.924 32 H 0.122 0.878 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.246 0.754 36 H 0.088 0.912 37 H 0.123 0.877 38 H 0.107 0.893 39 H 0.102 0.898 40 H 0.096 0.904 41 H 0.094 0.906 42 H 0.087 0.913 43 H 0.086 0.914 44 H 0.084 0.916 45 H 0.079 0.921 46 H 0.105 0.895 47 H 0.108 0.892 48 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -4.536 -21.210 -12.258 24.914 hybrid contribution 0.783 1.067 0.115 1.329 sum -3.753 -20.143 -12.143 23.818 Atomic orbital electron populations 1.69810 1.06530 1.26005 1.59542 1.25539 0.96385 1.01004 1.03785 0.85100 0.78261 0.79948 0.76612 1.19102 1.22038 1.22186 1.19693 0.91495 0.85167 1.40931 0.90611 1.42305 1.05340 1.00543 1.87605 1.21377 0.95014 0.84920 0.95302 0.92304 1.23353 0.99973 0.98657 0.95519 1.22480 0.98324 0.93713 0.97463 0.89992 1.21246 0.97608 0.95408 0.83921 1.46054 1.61670 1.08557 1.20654 1.21005 0.77922 0.82583 0.88189 1.90616 1.52558 1.38443 1.63979 1.22148 0.99728 0.99670 0.94204 0.86452 1.22283 0.86380 0.94954 1.03112 1.62521 1.47312 1.12373 1.03275 1.22324 0.95843 1.00061 0.89547 1.22265 0.97754 1.02482 0.95736 1.20882 0.99282 0.92840 0.95677 1.22382 0.96765 0.99993 1.00418 1.22193 0.96250 0.93412 0.95607 1.23702 0.97257 0.99178 0.99152 0.94003 0.79320 0.92432 0.87806 0.92260 0.91696 0.75352 0.91165 0.87745 0.89327 0.89755 0.90385 0.90617 0.91307 0.91372 0.91650 0.92138 0.89517 0.89181 0.93214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.18 13.06 21.65 0.28 -57.90 16 2 C -0.07 -4.23 5.50 84.86 0.47 -3.76 16 3 Si 0.97 45.45 29.55 68.60 2.03 47.48 16 4 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 5 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 6 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 7 C -0.24 -13.13 9.97 84.03 0.84 -12.29 16 8 H 0.08 3.98 7.83 -2.91 -0.02 3.96 16 9 N -0.72 -35.22 5.31 -320.44 -1.70 -36.93 16 10 C 0.14 5.42 4.56 45.52 0.21 5.63 16 11 H 0.06 2.23 8.10 -2.38 -0.02 2.21 16 12 C -0.14 -4.11 7.39 31.12 0.23 -3.88 16 13 C -0.10 -2.82 3.63 -10.27 -0.04 -2.86 16 14 H 0.08 2.52 8.14 -2.38 -0.02 2.50 16 15 C 0.14 3.50 5.51 86.38 0.48 3.98 16 16 N -0.72 -15.88 5.30 -463.08 -2.46 -18.33 16 17 C 0.52 12.21 6.59 87.66 0.58 12.79 16 18 O -0.58 -17.74 13.75 -3.04 -0.04 -17.79 16 19 C -0.13 -2.34 2.60 -11.36 -0.03 -2.37 16 20 H 0.12 1.63 8.14 -2.38 -0.02 1.61 16 21 C 0.06 1.00 5.60 86.35 0.48 1.49 16 22 N -0.53 -8.84 5.22 -895.16 -4.67 -13.51 16 23 C 0.05 0.62 6.09 86.34 0.53 1.14 16 24 C -0.14 -1.76 5.75 30.77 0.18 -1.59 16 25 C -0.07 -1.19 2.59 -10.41 -0.03 -1.21 16 26 C -0.16 -3.07 5.43 30.77 0.17 -2.90 16 27 C 0.05 0.96 6.09 86.34 0.53 1.48 16 28 C -0.15 -4.74 7.43 31.12 0.23 -4.51 16 29 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 30 H 0.37 19.61 7.90 -92.71 -0.73 18.88 16 31 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.10 2.61 8.10 -2.39 -0.02 2.59 16 33 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.06 1.65 7.84 -2.39 -0.02 1.63 16 35 H 0.41 7.76 8.38 -92.70 -0.78 6.99 16 36 H 0.07 1.31 7.45 -2.39 -0.02 1.30 16 37 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 41 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.07 1.40 8.12 -2.39 -0.02 1.38 16 43 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 44 H 0.06 1.69 5.59 -2.38 -0.01 1.68 16 45 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 46 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 47 H 0.09 2.42 7.90 -2.39 -0.02 2.40 16 48 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 Total: -1.00 -66.20 369.62 -2.31 -68.51 By element: Atomic # 1 Polarization: 37.89 SS G_CDS: -0.56 Total: 37.33 kcal Atomic # 6 Polarization: -13.68 SS G_CDS: 4.81 Total: -8.87 kcal Atomic # 7 Polarization: -118.12 SS G_CDS: -8.55 Total: -126.66 kcal Atomic # 8 Polarization: -17.74 SS G_CDS: -0.04 Total: -17.79 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Total: -66.20 -2.31 -68.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086367959.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.304 kcal (2) G-P(sol) polarization free energy of solvation -66.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds