Wall clock time and date at job start Fri Apr 10 2020 14:27:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86803 * 119.99833 * 2 1 4 4 H 1.48500 * 109.46946 * 274.17483 * 3 2 1 5 5 H 1.48498 * 109.47244 * 34.17575 * 3 2 1 6 6 H 1.48502 * 109.47226 * 154.17804 * 3 2 1 7 7 C 1.38811 * 120.00160 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99819 * 4.67457 * 7 2 1 9 9 N 1.36934 * 120.00012 * 184.67283 * 7 2 1 10 10 C 1.46507 * 119.99777 * 184.98088 * 9 7 2 11 11 C 1.53000 * 109.47017 * 185.07241 * 10 9 7 12 12 C 1.52996 * 115.55338 * 272.97112 * 11 10 9 13 13 C 1.53003 * 109.47272 * 294.60725 * 12 11 10 14 14 N 1.46494 * 109.47369 * 179.42757 * 13 12 11 15 15 C 1.34773 * 120.00373 * 184.93514 * 14 13 12 16 16 O 1.21288 * 119.99429 * 4.86721 * 15 14 13 17 17 C 1.50699 * 120.00204 * 184.87134 * 15 14 13 18 18 C 1.56243 * 116.68835 * 297.56829 * 17 15 14 19 19 C 1.55911 * 102.63628 * 199.97308 * 18 17 15 20 20 N 1.49524 * 105.39173 * 0.47079 * 19 18 17 21 21 C 1.49526 * 105.92315 * 287.97071 * 20 19 18 22 22 C 1.54653 * 105.28179 * 71.26046 * 21 20 19 23 23 C 1.50463 * 102.03325 * 34.38074 * 20 19 18 24 24 C 1.53001 * 117.49660 * 127.26273 * 11 10 9 25 25 C 1.53000 * 60.00152 * 252.51090 * 24 11 10 26 26 H 0.97005 * 120.00166 * 359.97438 * 1 2 3 27 27 H 0.97001 * 120.00223 * 4.98387 * 9 7 2 28 28 H 1.08996 * 109.46897 * 65.07613 * 10 9 7 29 29 H 1.08996 * 109.46953 * 305.07364 * 10 9 7 30 30 H 1.09000 * 109.47161 * 54.60628 * 12 11 10 31 31 H 1.08996 * 109.47195 * 174.60514 * 12 11 10 32 32 H 1.08998 * 109.46909 * 299.42955 * 13 12 11 33 33 H 1.09003 * 109.46980 * 59.42419 * 13 12 11 34 34 H 0.97005 * 120.00085 * 4.93142 * 14 13 12 35 35 H 1.08999 * 110.67049 * 319.47441 * 18 17 15 36 36 H 1.08996 * 110.66965 * 82.61586 * 18 17 15 37 37 H 1.09005 * 110.87385 * 241.14804 * 19 18 17 38 38 H 1.08994 * 109.58206 * 119.12568 * 19 18 17 39 39 H 1.08995 * 110.28084 * 190.21133 * 21 20 19 40 40 H 1.08999 * 110.28228 * 312.31229 * 21 20 19 41 41 H 1.08997 * 110.67380 * 242.22432 * 22 21 20 42 42 H 1.09005 * 110.66822 * 119.08581 * 22 21 20 43 43 H 1.08999 * 111.90758 * 188.39717 * 23 20 19 44 44 H 1.09001 * 111.97033 * 62.21954 * 23 20 19 45 45 H 1.08996 * 117.49893 * 359.97438 * 24 11 10 46 46 H 1.09002 * 117.49900 * 145.02419 * 24 11 10 47 47 H 1.09002 * 117.50428 * 252.51082 * 25 24 11 48 48 H 1.09001 * 117.49721 * 107.48499 * 25 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4093 2.0974 -1.3964 5 1 1.4945 2.6256 0.7865 6 1 3.5891 1.4164 0.6098 7 6 2.0102 -1.2021 0.0005 8 1 1.4729 -2.1359 -0.0753 9 7 3.3762 -1.2040 0.0971 10 6 4.1165 -2.4636 -0.0119 11 6 5.6010 -2.2074 0.2551 12 6 6.4287 -1.7928 -0.9630 13 6 6.4766 -2.9486 -1.9644 14 7 7.2577 -2.5470 -3.1368 15 6 7.3529 -3.3721 -4.1982 16 8 6.7213 -4.4074 -4.2199 17 6 8.2440 -3.0086 -5.3578 18 6 7.8822 -1.7047 -6.1390 19 6 8.6127 -1.9095 -7.5011 20 7 9.2825 -3.2421 -7.3958 21 6 10.4231 -3.0542 -6.4474 22 6 9.7716 -2.8801 -5.0557 23 6 8.3036 -4.0200 -6.5590 24 6 6.2873 -3.0708 1.3155 25 6 5.9811 -1.6004 1.6072 26 1 -0.4850 0.8401 0.0004 27 1 3.8536 -0.3714 0.2378 28 1 3.9929 -2.8719 -1.0149 29 1 3.7331 -3.1748 0.7197 30 1 5.9714 -0.9227 -1.4340 31 1 7.4416 -1.5442 -0.6465 32 1 6.9431 -3.8156 -1.4966 33 1 5.4629 -3.2040 -2.2732 34 1 7.7064 -1.6870 -3.1493 35 1 6.8030 -1.6193 -6.2661 36 1 8.2814 -0.8277 -5.6296 37 1 9.3529 -1.1265 -7.6663 38 1 7.8822 -1.9166 -8.3100 39 1 11.0693 -3.9319 -6.4550 40 1 10.9919 -2.1629 -6.7124 41 1 10.0009 -1.8975 -4.6436 42 1 10.0971 -3.6686 -4.3771 43 1 8.7053 -4.9872 -6.2568 44 1 7.3371 -4.1232 -7.0523 45 1 5.6811 -3.8210 1.8231 46 1 7.3288 -3.3438 1.1453 47 1 6.8211 -0.9060 1.6289 48 1 5.1735 -1.3837 2.3064 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167746645.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:27:41 Heat of formation + Delta-G solvation = 21.548438 kcal Electronic energy + Delta-G solvation = -25617.909657 eV Core-core repulsion = 22095.131760 eV Total energy + Delta-G solvation = -3522.777897 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 307.200 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.42707 -39.23631 -38.30254 -35.01763 -33.99350 -31.56998 -31.08890 -31.07197 -29.74627 -28.41836 -26.34053 -24.15012 -22.94959 -22.67344 -22.06160 -21.61427 -21.09865 -19.76413 -18.71925 -17.49240 -17.14231 -16.50223 -16.21498 -15.72155 -15.51415 -15.04858 -14.84153 -14.49006 -14.26620 -13.68709 -13.60980 -13.24191 -13.18714 -12.94599 -12.62431 -12.60269 -12.30788 -12.18176 -12.09059 -11.83733 -11.76785 -11.64197 -11.36625 -11.24955 -11.08323 -10.90561 -10.70800 -10.66907 -10.18210 -9.95734 -9.89091 -9.63631 -9.49423 -9.44560 -9.15817 -8.87510 -7.19980 -5.76735 -3.11410 2.40527 2.94923 3.34514 3.38282 3.43222 3.43725 3.92269 4.03133 4.09536 4.40659 4.58420 4.58471 4.59761 4.67638 4.80695 4.82200 4.93528 5.01001 5.09426 5.13157 5.13871 5.20659 5.32364 5.35889 5.40322 5.43593 5.49687 5.53630 5.55241 5.60745 5.62805 5.70454 5.80245 5.86201 5.99030 6.06979 6.10900 6.18288 6.23182 6.28782 6.33095 6.38769 6.67796 6.74149 7.34110 8.02097 8.06959 8.42936 9.23439 9.95246 10.16845 11.41841 Molecular weight = 307.20amu Principal moments of inertia in cm(-1) A = 0.016203 B = 0.003071 C = 0.002823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1727.614974 B = 9115.094258 C = 9916.960450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.003 3.997 3 Si 0.887 3.113 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.277 1.277 7 C -0.242 4.242 8 H 0.089 0.911 9 N -0.753 5.753 10 C 0.190 3.810 11 C -0.129 4.129 12 C -0.089 4.089 13 C 0.120 3.880 14 N -0.724 5.724 15 C 0.549 3.451 16 O -0.531 6.531 17 C -0.133 4.133 18 C -0.137 4.137 19 C 0.013 3.987 20 N -0.466 5.466 21 C 0.013 3.987 22 C -0.134 4.134 23 C 0.040 3.960 24 C -0.171 4.171 25 C -0.165 4.165 26 H 0.259 0.741 27 H 0.363 0.637 28 H 0.030 0.970 29 H 0.031 0.969 30 H 0.076 0.924 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.080 0.920 34 H 0.398 0.602 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.080 0.920 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.079 0.921 41 H 0.076 0.924 42 H 0.075 0.925 43 H 0.092 0.908 44 H 0.093 0.907 45 H 0.095 0.905 46 H 0.089 0.911 47 H 0.087 0.913 48 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.734 -3.565 -9.751 26.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.192 4.192 3 Si 0.717 3.283 4 H -0.213 1.213 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.372 4.372 8 H 0.107 0.893 9 N -0.399 5.399 10 C 0.063 3.937 11 C -0.130 4.130 12 C -0.127 4.127 13 C -0.003 4.003 14 N -0.375 5.375 15 C 0.333 3.667 16 O -0.407 6.407 17 C -0.138 4.138 18 C -0.176 4.176 19 C -0.116 4.116 20 N -0.186 5.186 21 C -0.116 4.116 22 C -0.173 4.173 23 C -0.089 4.089 24 C -0.209 4.209 25 C -0.203 4.203 26 H 0.069 0.931 27 H 0.197 0.803 28 H 0.048 0.952 29 H 0.049 0.951 30 H 0.095 0.905 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.098 0.902 34 H 0.232 0.768 35 H 0.098 0.902 36 H 0.095 0.905 37 H 0.099 0.901 38 H 0.104 0.896 39 H 0.104 0.896 40 H 0.098 0.902 41 H 0.095 0.905 42 H 0.094 0.906 43 H 0.110 0.890 44 H 0.112 0.888 45 H 0.113 0.887 46 H 0.107 0.893 47 H 0.106 0.894 48 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 24.258 -4.707 -10.483 26.842 hybrid contribution 0.478 2.189 0.994 2.451 sum 24.737 -2.518 -9.489 26.614 Atomic orbital electron populations 1.69713 1.05133 1.25748 1.57619 1.24692 0.95213 0.97168 1.02143 0.86502 0.79064 0.85093 0.77600 1.21272 1.21810 1.20396 1.19073 0.80990 0.94719 1.42444 0.89331 1.42773 1.04263 1.03836 1.89026 1.20203 0.85487 0.89513 0.98510 1.21648 0.96717 1.05014 0.89649 1.21241 0.99100 0.97926 0.94395 1.21440 0.96900 0.97417 0.84548 1.45998 1.53247 1.21147 1.17125 1.19391 0.81379 0.83685 0.82233 1.90740 1.44842 1.25206 1.79894 1.23807 0.95718 0.98776 0.95482 1.23447 1.02079 0.95679 0.96357 1.23837 0.98524 0.92343 0.96912 1.69997 1.04912 1.09613 1.34068 1.23611 0.95215 1.02766 0.90027 1.23193 0.92195 1.02916 0.99005 1.24352 0.97725 0.96866 0.89994 1.23020 1.00636 0.94279 1.02933 1.22945 1.02978 0.95504 0.98838 0.93098 0.80325 0.95214 0.95069 0.90536 0.91804 0.91558 0.90154 0.76815 0.90164 0.90550 0.90111 0.89611 0.89623 0.90227 0.90496 0.90636 0.88957 0.88812 0.88654 0.89293 0.89417 0.88110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.57 13.97 55.49 0.78 -28.79 16 2 C 0.00 0.10 5.50 -17.43 -0.10 0.01 16 3 Si 0.89 22.09 28.00 -169.99 -4.76 17.33 16 4 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 5 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 6 H -0.28 -6.40 6.16 56.52 0.35 -6.05 16 7 C -0.24 -6.91 10.47 -15.06 -0.16 -7.06 16 8 H 0.09 2.72 8.06 -52.49 -0.42 2.30 16 9 N -0.75 -17.76 5.26 -59.91 -0.32 -18.08 16 10 C 0.19 3.66 6.18 -4.04 -0.02 3.64 16 11 C -0.13 -1.90 1.59 -154.51 -0.25 -2.14 16 12 C -0.09 -1.09 5.21 -26.73 -0.14 -1.23 16 13 C 0.12 1.51 5.57 -4.04 -0.02 1.49 16 14 N -0.72 -7.78 5.55 -60.30 -0.33 -8.12 16 15 C 0.55 6.73 7.28 -10.99 -0.08 6.65 16 16 O -0.53 -8.76 16.54 5.55 0.09 -8.67 16 17 C -0.13 -1.20 1.37 -149.93 -0.21 -1.41 16 18 C -0.14 -1.05 6.13 -23.44 -0.14 -1.19 16 19 C 0.01 0.09 6.64 -0.80 -0.01 0.09 16 20 N -0.47 -3.97 6.94 -221.24 -1.54 -5.50 16 21 C 0.01 0.09 6.61 -1.49 -0.01 0.08 16 22 C -0.13 -0.92 6.04 -24.12 -0.15 -1.06 16 23 C 0.04 0.38 6.05 0.43 0.00 0.39 16 24 C -0.17 -2.13 9.90 -26.73 -0.26 -2.40 16 25 C -0.17 -2.30 9.65 -26.73 -0.26 -2.55 16 26 H 0.26 7.78 8.31 -40.82 -0.34 7.45 16 27 H 0.36 8.37 5.27 -40.82 -0.22 8.15 16 28 H 0.03 0.60 6.56 -51.93 -0.34 0.26 16 29 H 0.03 0.63 7.89 -51.93 -0.41 0.22 16 30 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 31 H 0.06 0.64 8.09 -51.93 -0.42 0.22 16 32 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.08 1.24 6.67 -51.93 -0.35 0.90 16 34 H 0.40 3.24 8.48 -40.82 -0.35 2.89 16 35 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.08 0.48 7.86 -51.93 -0.41 0.07 16 37 H 0.08 0.48 7.69 -51.93 -0.40 0.08 16 38 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.08 0.44 7.69 -51.93 -0.40 0.04 16 41 H 0.08 0.42 7.86 -51.93 -0.41 0.01 16 42 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 45 H 0.10 1.20 8.04 -51.93 -0.42 0.78 16 46 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 47 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 48 H 0.10 1.59 8.14 -51.93 -0.42 1.17 16 LS Contribution 378.87 15.07 5.71 5.71 Total: -1.00 -33.58 378.87 -10.54 -44.11 By element: Atomic # 1 Polarization: 17.10 SS G_CDS: -8.37 Total: 8.72 kcal Atomic # 6 Polarization: -4.93 SS G_CDS: -1.80 Total: -6.72 kcal Atomic # 7 Polarization: -59.08 SS G_CDS: -1.41 Total: -60.49 kcal Atomic # 8 Polarization: -8.76 SS G_CDS: 0.09 Total: -8.67 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.76 Total: 17.33 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.58 -10.54 -44.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167746645.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.660 kcal (2) G-P(sol) polarization free energy of solvation -33.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds