Wall clock time and date at job start Fri Apr 10 2020 14:27:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86803 * 119.99833 * 2 1 4 4 H 1.48500 * 109.46946 * 274.17483 * 3 2 1 5 5 H 1.48498 * 109.47244 * 34.17575 * 3 2 1 6 6 H 1.48502 * 109.47226 * 154.17804 * 3 2 1 7 7 C 1.38811 * 120.00160 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99819 * 4.67457 * 7 2 1 9 9 N 1.36934 * 120.00012 * 184.67283 * 7 2 1 10 10 C 1.46507 * 119.99777 * 184.98088 * 9 7 2 11 11 C 1.53000 * 109.47017 * 185.07241 * 10 9 7 12 12 C 1.52996 * 115.55338 * 272.97112 * 11 10 9 13 13 C 1.53003 * 109.47272 * 294.60725 * 12 11 10 14 14 N 1.46494 * 109.47369 * 179.42757 * 13 12 11 15 15 C 1.34773 * 120.00373 * 184.93514 * 14 13 12 16 16 O 1.21288 * 119.99429 * 4.86721 * 15 14 13 17 17 C 1.50699 * 120.00204 * 184.87134 * 15 14 13 18 18 C 1.56243 * 116.68835 * 297.56829 * 17 15 14 19 19 C 1.55911 * 102.63628 * 199.97308 * 18 17 15 20 20 N 1.49524 * 105.39173 * 0.47079 * 19 18 17 21 21 C 1.49526 * 105.92315 * 287.97071 * 20 19 18 22 22 C 1.54653 * 105.28179 * 71.26046 * 21 20 19 23 23 C 1.50463 * 102.03325 * 34.38074 * 20 19 18 24 24 C 1.53001 * 117.49660 * 127.26273 * 11 10 9 25 25 C 1.53000 * 60.00152 * 252.51090 * 24 11 10 26 26 H 0.97005 * 120.00166 * 359.97438 * 1 2 3 27 27 H 0.97001 * 120.00223 * 4.98387 * 9 7 2 28 28 H 1.08996 * 109.46897 * 65.07613 * 10 9 7 29 29 H 1.08996 * 109.46953 * 305.07364 * 10 9 7 30 30 H 1.09000 * 109.47161 * 54.60628 * 12 11 10 31 31 H 1.08996 * 109.47195 * 174.60514 * 12 11 10 32 32 H 1.08998 * 109.46909 * 299.42955 * 13 12 11 33 33 H 1.09003 * 109.46980 * 59.42419 * 13 12 11 34 34 H 0.97005 * 120.00085 * 4.93142 * 14 13 12 35 35 H 1.08999 * 110.67049 * 319.47441 * 18 17 15 36 36 H 1.08996 * 110.66965 * 82.61586 * 18 17 15 37 37 H 1.09005 * 110.87385 * 241.14804 * 19 18 17 38 38 H 1.08994 * 109.58206 * 119.12568 * 19 18 17 39 39 H 1.08995 * 110.28084 * 190.21133 * 21 20 19 40 40 H 1.08999 * 110.28228 * 312.31229 * 21 20 19 41 41 H 1.08997 * 110.67380 * 242.22432 * 22 21 20 42 42 H 1.09005 * 110.66822 * 119.08581 * 22 21 20 43 43 H 1.08999 * 111.90758 * 188.39717 * 23 20 19 44 44 H 1.09001 * 111.97033 * 62.21954 * 23 20 19 45 45 H 1.08996 * 117.49893 * 359.97438 * 24 11 10 46 46 H 1.09002 * 117.49900 * 145.02419 * 24 11 10 47 47 H 1.09002 * 117.50428 * 252.51082 * 25 24 11 48 48 H 1.09001 * 117.49721 * 107.48499 * 25 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4093 2.0974 -1.3964 5 1 1.4945 2.6256 0.7865 6 1 3.5891 1.4164 0.6098 7 6 2.0102 -1.2021 0.0005 8 1 1.4729 -2.1359 -0.0753 9 7 3.3762 -1.2040 0.0971 10 6 4.1165 -2.4636 -0.0119 11 6 5.6010 -2.2074 0.2551 12 6 6.4287 -1.7928 -0.9630 13 6 6.4766 -2.9486 -1.9644 14 7 7.2577 -2.5470 -3.1368 15 6 7.3529 -3.3721 -4.1982 16 8 6.7213 -4.4074 -4.2199 17 6 8.2440 -3.0086 -5.3578 18 6 7.8822 -1.7047 -6.1390 19 6 8.6127 -1.9095 -7.5011 20 7 9.2825 -3.2421 -7.3958 21 6 10.4231 -3.0542 -6.4474 22 6 9.7716 -2.8801 -5.0557 23 6 8.3036 -4.0200 -6.5590 24 6 6.2873 -3.0708 1.3155 25 6 5.9811 -1.6004 1.6072 26 1 -0.4850 0.8401 0.0004 27 1 3.8536 -0.3714 0.2378 28 1 3.9929 -2.8719 -1.0149 29 1 3.7331 -3.1748 0.7197 30 1 5.9714 -0.9227 -1.4340 31 1 7.4416 -1.5442 -0.6465 32 1 6.9431 -3.8156 -1.4966 33 1 5.4629 -3.2040 -2.2732 34 1 7.7064 -1.6870 -3.1493 35 1 6.8030 -1.6193 -6.2661 36 1 8.2814 -0.8277 -5.6296 37 1 9.3529 -1.1265 -7.6663 38 1 7.8822 -1.9166 -8.3100 39 1 11.0693 -3.9319 -6.4550 40 1 10.9919 -2.1629 -6.7124 41 1 10.0009 -1.8975 -4.6436 42 1 10.0971 -3.6686 -4.3771 43 1 8.7053 -4.9872 -6.2568 44 1 7.3371 -4.1232 -7.0523 45 1 5.6811 -3.8210 1.8231 46 1 7.3288 -3.3438 1.1453 47 1 6.8211 -0.9060 1.6289 48 1 5.1735 -1.3837 2.3064 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167746645.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:27:40 Heat of formation + Delta-G solvation = -4.255923 kcal Electronic energy + Delta-G solvation = -25619.028618 eV Core-core repulsion = 22095.131760 eV Total energy + Delta-G solvation = -3523.896858 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 307.200 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.12730 -40.22298 -39.45345 -36.24540 -35.76291 -33.21474 -32.36788 -31.60778 -30.63677 -29.06851 -28.11919 -25.15331 -24.33765 -23.48981 -23.23894 -22.72881 -21.76171 -20.77704 -20.17302 -19.12580 -17.96741 -17.24151 -17.19062 -16.67083 -16.54717 -16.28267 -16.15821 -15.81389 -15.43916 -15.14474 -14.77816 -14.32331 -14.21597 -13.85348 -13.81437 -13.78977 -13.65589 -13.16438 -13.13579 -12.85967 -12.73916 -12.55242 -12.43040 -12.29463 -12.27967 -12.15252 -11.93554 -11.78747 -11.64498 -11.28149 -11.21182 -10.98857 -10.85524 -10.66133 -10.15132 -10.06007 -9.29062 -8.04887 -5.38286 1.34615 1.40700 1.46957 1.48237 2.05231 2.47018 2.78487 2.82331 3.25659 3.39714 3.45014 3.69976 3.74727 3.77204 3.84602 3.92299 4.02403 4.03596 4.10897 4.15320 4.29712 4.39080 4.43176 4.49207 4.50954 4.59114 4.64315 4.76378 4.82579 4.83032 4.86105 4.91092 4.92946 4.94084 5.01661 5.07874 5.11938 5.13323 5.24874 5.31576 5.34752 5.40014 5.47053 5.68380 5.73385 6.19358 6.48172 7.06959 7.16728 7.82603 8.05929 9.17109 Molecular weight = 307.20amu Principal moments of inertia in cm(-1) A = 0.016203 B = 0.003071 C = 0.002823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1727.614974 B = 9115.094258 C = 9916.960450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.986 5.986 2 C -0.066 4.066 3 Si 0.963 3.037 4 H -0.280 1.280 5 H -0.295 1.295 6 H -0.244 1.244 7 C -0.239 4.239 8 H 0.048 0.952 9 N -0.750 5.750 10 C 0.187 3.813 11 C -0.145 4.145 12 C -0.076 4.076 13 C 0.126 3.874 14 N -0.710 5.710 15 C 0.545 3.455 16 O -0.583 6.583 17 C -0.133 4.133 18 C -0.131 4.131 19 C 0.014 3.986 20 N -0.478 5.478 21 C 0.013 3.987 22 C -0.124 4.124 23 C 0.035 3.965 24 C -0.150 4.150 25 C -0.164 4.164 26 H 0.258 0.742 27 H 0.370 0.630 28 H 0.018 0.982 29 H 0.017 0.983 30 H 0.066 0.934 31 H 0.103 0.897 32 H 0.070 0.930 33 H 0.041 0.959 34 H 0.415 0.585 35 H 0.063 0.937 36 H 0.100 0.900 37 H 0.103 0.897 38 H 0.080 0.920 39 H 0.087 0.913 40 H 0.100 0.900 41 H 0.101 0.899 42 H 0.072 0.928 43 H 0.083 0.917 44 H 0.075 0.925 45 H 0.088 0.912 46 H 0.121 0.879 47 H 0.117 0.883 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.216 -1.303 -9.504 30.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.636 5.636 2 C -0.258 4.258 3 Si 0.790 3.210 4 H -0.207 1.207 5 H -0.221 1.221 6 H -0.169 1.169 7 C -0.370 4.370 8 H 0.066 0.934 9 N -0.396 5.396 10 C 0.061 3.939 11 C -0.146 4.146 12 C -0.113 4.113 13 C 0.002 3.998 14 N -0.361 5.361 15 C 0.331 3.669 16 O -0.463 6.463 17 C -0.139 4.139 18 C -0.170 4.170 19 C -0.114 4.114 20 N -0.198 5.198 21 C -0.115 4.115 22 C -0.163 4.163 23 C -0.094 4.094 24 C -0.187 4.187 25 C -0.201 4.201 26 H 0.067 0.933 27 H 0.204 0.796 28 H 0.036 0.964 29 H 0.035 0.965 30 H 0.084 0.916 31 H 0.121 0.879 32 H 0.088 0.912 33 H 0.060 0.940 34 H 0.252 0.748 35 H 0.081 0.919 36 H 0.119 0.881 37 H 0.121 0.879 38 H 0.098 0.902 39 H 0.105 0.895 40 H 0.118 0.882 41 H 0.120 0.880 42 H 0.090 0.910 43 H 0.101 0.899 44 H 0.094 0.906 45 H 0.106 0.894 46 H 0.139 0.861 47 H 0.135 0.865 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 28.809 -2.439 -10.229 30.668 hybrid contribution -0.999 1.327 0.912 1.895 sum 27.810 -1.112 -9.317 29.350 Atomic orbital electron populations 1.69914 1.07387 1.26819 1.59510 1.25609 0.96178 1.01604 1.02371 0.85283 0.78897 0.78994 0.77871 1.20657 1.22125 1.16854 1.19029 0.83259 0.93318 1.41363 0.93437 1.42700 1.02524 1.05657 1.88757 1.20266 0.88845 0.87455 0.97347 1.21476 0.93805 1.07756 0.91536 1.21154 1.00516 0.96796 0.92858 1.21244 0.95161 0.98110 0.85261 1.45851 1.52475 1.21612 1.16198 1.19966 0.80968 0.82950 0.83003 1.90717 1.47048 1.27532 1.80982 1.23707 0.96886 0.99236 0.94022 1.23450 1.01308 0.95637 0.96648 1.23887 0.98898 0.92264 0.96373 1.69973 1.05191 1.10196 1.34450 1.23694 0.94596 1.03874 0.89357 1.23190 0.89703 1.04195 0.99195 1.24280 0.97325 0.97134 0.90691 1.23109 1.01856 0.93457 1.00276 1.22998 1.03135 0.97100 0.96868 0.93276 0.79566 0.96409 0.96483 0.91577 0.87907 0.91179 0.94032 0.74805 0.91856 0.88122 0.87887 0.90177 0.89488 0.88155 0.88046 0.90961 0.89871 0.90615 0.89364 0.86073 0.86481 0.90501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -64.47 13.97 21.65 0.30 -64.17 16 2 C -0.07 -3.98 5.50 84.86 0.47 -3.52 16 3 Si 0.96 45.40 28.00 68.60 1.92 47.32 16 4 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 5 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 6 H -0.24 -10.04 6.16 99.48 0.61 -9.43 16 7 C -0.24 -14.05 10.47 84.03 0.88 -13.17 16 8 H 0.05 3.11 8.06 -2.91 -0.02 3.09 16 9 N -0.75 -35.47 5.26 -343.45 -1.81 -37.28 16 10 C 0.19 7.33 6.18 86.38 0.53 7.86 16 11 C -0.14 -3.94 1.59 -52.18 -0.08 -4.02 16 12 C -0.08 -1.62 5.21 30.59 0.16 -1.47 16 13 C 0.13 3.02 5.57 86.38 0.48 3.50 16 14 N -0.71 -13.95 5.55 -463.07 -2.57 -16.52 16 15 C 0.54 13.13 7.28 87.66 0.64 13.77 16 16 O -0.58 -19.99 16.54 -3.05 -0.05 -20.04 16 17 C -0.13 -2.24 1.37 -49.22 -0.07 -2.31 16 18 C -0.13 -1.74 6.13 32.73 0.20 -1.54 16 19 C 0.01 0.18 6.64 86.80 0.58 0.75 16 20 N -0.48 -7.40 6.94 -853.86 -5.93 -13.33 16 21 C 0.01 0.14 6.61 86.35 0.57 0.71 16 22 C -0.12 -1.31 6.04 32.28 0.20 -1.12 16 23 C 0.04 0.68 6.05 87.06 0.53 1.21 16 24 C -0.15 -3.26 9.90 30.59 0.30 -2.96 16 25 C -0.16 -4.00 9.65 30.60 0.30 -3.71 16 26 H 0.26 15.99 8.31 -92.70 -0.77 15.22 16 27 H 0.37 16.37 5.27 -92.71 -0.49 15.88 16 28 H 0.02 0.75 6.56 -2.39 -0.02 0.73 16 29 H 0.02 0.71 7.89 -2.39 -0.02 0.69 16 30 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.10 1.48 8.09 -2.39 -0.02 1.46 16 32 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.04 1.33 6.67 -2.39 -0.02 1.31 16 34 H 0.42 5.30 8.48 -92.70 -0.79 4.52 16 35 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.10 0.85 7.86 -2.39 -0.02 0.83 16 37 H 0.10 0.83 7.69 -2.38 -0.02 0.81 16 38 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.10 0.67 7.69 -2.39 -0.02 0.65 16 41 H 0.10 0.61 7.86 -2.39 -0.02 0.59 16 42 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 43 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 44 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 45 H 0.09 2.06 8.04 -2.39 -0.02 2.04 16 46 H 0.12 1.93 8.14 -2.39 -0.02 1.91 16 47 H 0.12 2.20 8.14 -2.39 -0.02 2.18 16 48 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 Total: -1.00 -77.61 378.87 -2.87 -80.48 By element: Atomic # 1 Polarization: 29.97 SS G_CDS: -0.42 Total: 29.56 kcal Atomic # 6 Polarization: -11.68 SS G_CDS: 5.68 Total: -6.01 kcal Atomic # 7 Polarization: -121.30 SS G_CDS: -10.00 Total: -131.30 kcal Atomic # 8 Polarization: -19.99 SS G_CDS: -0.05 Total: -20.04 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 1.92 Total: 47.32 kcal Total: -77.61 -2.87 -80.48 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167746645.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.224 kcal (2) G-P(sol) polarization free energy of solvation -77.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds