Wall clock time and date at job start Fri Apr 10 2020 14:30:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00116 * 2 1 4 4 H 1.48501 * 109.46864 * 269.99750 * 3 2 1 5 5 H 1.48500 * 109.47025 * 29.99739 * 3 2 1 6 6 H 1.48496 * 109.47445 * 149.99717 * 3 2 1 7 7 C 1.37879 * 119.99896 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99739 * 179.97438 * 7 2 1 9 9 C 1.50693 * 119.99971 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47183 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47317 * 179.97438 * 10 9 7 12 12 C 1.52995 * 109.47294 * 299.99617 * 11 10 9 13 13 N 1.46900 * 109.47622 * 179.97438 * 12 11 10 14 14 C 1.47963 * 110.99935 * 179.97438 * 13 12 11 15 15 C 1.53937 * 86.18037 * 222.41631 * 14 13 12 16 16 N 1.46900 * 113.73127 * 138.07769 * 15 14 13 17 17 C 1.47185 * 110.99887 * 180.83700 * 16 15 14 18 18 C 1.52992 * 108.71825 * 167.62440 * 17 16 15 19 19 N 1.46018 * 110.03907 * 50.30733 * 18 17 16 20 20 C 1.33714 * 122.92358 * 341.83961 * 19 18 17 21 21 O 1.21278 * 118.61847 * 181.68683 * 20 19 18 22 22 C 1.46909 * 110.99602 * 57.94970 * 16 15 14 23 23 C 1.48185 * 111.06660 * 80.56733 * 13 12 11 24 24 C 1.53001 * 109.46986 * 59.99857 * 12 11 10 25 25 C 1.52995 * 109.47298 * 299.99247 * 9 7 2 26 26 H 0.97004 * 120.00144 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.47380 * 59.99774 * 9 7 2 28 28 H 1.08998 * 109.47529 * 59.99343 * 10 9 7 29 29 H 1.09003 * 109.46948 * 299.99583 * 10 9 7 30 30 H 1.09006 * 109.47298 * 180.02562 * 11 10 9 31 31 H 1.09000 * 109.47250 * 60.00062 * 11 10 9 32 32 H 1.09000 * 109.47335 * 300.00393 * 12 11 10 33 33 H 1.09004 * 113.75123 * 108.10349 * 14 13 12 34 34 H 1.08995 * 113.86305 * 336.74943 * 14 13 12 35 35 H 1.09003 * 113.73518 * 269.26232 * 15 14 13 36 36 H 1.08996 * 109.59827 * 287.41046 * 17 16 15 37 37 H 1.09000 * 109.59716 * 47.71600 * 17 16 15 38 38 H 1.09003 * 109.37746 * 290.13187 * 18 17 16 39 39 H 1.09003 * 109.37887 * 170.47797 * 18 17 16 40 40 H 0.96997 * 118.53285 * 162.12828 * 19 18 17 41 41 H 1.09000 * 109.38197 * 53.50775 * 22 16 15 42 42 H 1.08994 * 109.30127 * 293.76880 * 22 16 15 43 43 H 1.08997 * 113.76199 * 23.24660 * 23 13 12 44 44 H 1.09003 * 113.82757 * 251.80651 * 23 13 12 45 45 H 1.09005 * 109.47092 * 60.00156 * 24 12 11 46 46 H 1.09003 * 109.47307 * 180.02562 * 24 12 11 47 47 H 1.09000 * 109.47335 * 300.00554 * 25 9 7 48 48 H 1.09007 * 109.47092 * 60.00023 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4802 -4.9870 0.0012 12 6 0.6011 -5.0678 1.2507 13 7 -0.1339 -6.3397 1.2511 14 6 -0.9962 -6.4535 2.4481 15 6 -0.5132 -7.9128 2.5306 16 7 -0.2043 -8.3569 3.8964 17 6 0.2694 -9.7504 3.9033 18 6 0.8637 -10.0601 5.2787 19 7 -0.0719 -9.6661 6.3282 20 6 -1.0833 -8.8168 6.1190 21 8 -1.7952 -8.5194 7.0547 22 6 -1.3744 -8.2152 4.7733 23 6 0.7208 -7.4487 1.7366 24 6 -0.3931 -3.9049 1.2508 25 6 0.3711 -2.5800 1.2495 26 1 -0.4850 0.8401 -0.0004 27 1 0.6247 -2.5571 -0.8896 28 1 2.8720 -3.6043 0.8904 29 1 2.8718 -3.6044 -0.8895 30 1 2.1886 -5.8156 0.0016 31 1 0.8533 -5.0451 -0.8886 32 1 1.2281 -5.0098 2.1405 33 1 -2.0603 -6.3546 2.2336 34 1 -0.6720 -5.8355 3.2854 35 1 -1.1455 -8.6155 1.9880 36 1 -0.5664 -10.4217 3.7065 37 1 1.0320 -9.8812 3.1355 38 1 1.7971 -9.5107 5.4014 39 1 1.0627 -11.1291 5.3544 40 1 0.0481 -10.0337 7.2178 41 1 -2.2264 -8.7265 4.3251 42 1 -1.6091 -7.1576 4.8928 43 1 1.5496 -7.1219 2.3646 44 1 1.0264 -8.1439 0.9546 45 1 -1.0201 -3.9628 0.3611 46 1 -1.0192 -3.9621 2.1413 47 1 0.9974 -2.5220 2.1397 48 1 -0.3373 -1.7514 1.2492 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173337598.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:30:06 Heat of formation + Delta-G solvation = -4.789237 kcal Electronic energy + Delta-G solvation = -26020.725259 eV Core-core repulsion = 22496.805275 eV Total energy + Delta-G solvation = -3523.919984 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 307.200 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.91755 -39.85872 -37.53739 -36.49126 -34.47798 -32.66450 -30.23269 -30.15128 -29.64135 -27.36925 -26.19141 -25.34134 -23.91577 -23.12354 -21.38921 -20.39564 -19.73866 -19.58302 -18.70577 -17.78869 -16.94651 -16.32988 -16.14150 -15.98344 -15.76970 -15.09029 -14.65825 -14.28085 -14.01783 -13.91674 -13.48053 -13.34548 -13.04683 -12.86773 -12.79547 -12.46870 -12.31426 -12.07263 -11.84183 -11.66651 -11.26236 -11.15364 -10.98461 -10.67619 -10.64532 -10.52357 -10.30040 -10.13465 -10.04420 -9.72618 -9.47205 -9.32643 -8.91392 -8.84643 -8.61566 -8.61223 -8.25073 -5.93705 -3.99696 2.29188 2.89654 3.27364 3.32742 3.39612 3.42720 4.05986 4.08391 4.21949 4.36934 4.47455 4.66715 4.82828 4.92398 4.96439 5.05290 5.15459 5.26057 5.29245 5.35448 5.40918 5.47423 5.56991 5.62434 5.68952 5.82270 5.96248 6.08228 6.25871 6.30688 6.38633 6.45268 6.46818 6.49014 6.61974 6.66731 6.78981 6.81731 6.90878 6.97941 7.17194 7.26459 7.37474 7.57829 7.79709 7.86029 8.07659 8.20557 8.52357 9.04626 9.64732 11.11786 Molecular weight = 307.20amu Principal moments of inertia in cm(-1) A = 0.024358 B = 0.002744 C = 0.002632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.228112 B =10201.869574 C =10636.338679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.060 3.940 3 Si 0.888 3.112 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.512 4.512 8 H 0.053 0.947 9 C 0.049 3.951 10 C -0.108 4.108 11 C -0.100 4.100 12 C 0.060 3.940 13 N -0.475 5.475 14 C 0.014 3.986 15 C 0.043 3.957 16 N -0.523 5.523 17 C 0.033 3.967 18 C 0.116 3.884 19 N -0.720 5.720 20 C 0.527 3.473 21 O -0.553 6.553 22 C 0.037 3.963 23 C 0.019 3.981 24 C -0.109 4.109 25 C -0.107 4.107 26 H 0.259 0.741 27 H 0.025 0.975 28 H 0.044 0.956 29 H 0.047 0.953 30 H 0.041 0.959 31 H 0.062 0.938 32 H 0.043 0.957 33 H 0.086 0.914 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.046 0.954 37 H 0.099 0.901 38 H 0.076 0.924 39 H 0.081 0.919 40 H 0.400 0.600 41 H 0.074 0.926 42 H 0.117 0.883 43 H 0.078 0.922 44 H 0.084 0.916 45 H 0.059 0.941 46 H 0.040 0.960 47 H 0.030 0.970 48 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.098 -22.496 7.474 23.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.140 4.140 3 Si 0.716 3.284 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.551 4.551 8 H 0.071 0.929 9 C 0.031 3.969 10 C -0.146 4.146 11 C -0.138 4.138 12 C -0.048 4.048 13 N -0.198 5.198 14 C -0.115 4.115 15 C -0.065 4.065 16 N -0.249 5.249 17 C -0.096 4.096 18 C -0.009 4.009 19 N -0.373 5.373 20 C 0.313 3.687 21 O -0.431 6.431 22 C -0.093 4.093 23 C -0.110 4.110 24 C -0.146 4.146 25 C -0.146 4.146 26 H 0.069 0.931 27 H 0.043 0.957 28 H 0.063 0.937 29 H 0.066 0.934 30 H 0.060 0.940 31 H 0.080 0.920 32 H 0.061 0.939 33 H 0.105 0.895 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.064 0.936 37 H 0.117 0.883 38 H 0.094 0.906 39 H 0.099 0.901 40 H 0.236 0.764 41 H 0.092 0.908 42 H 0.135 0.865 43 H 0.096 0.904 44 H 0.102 0.898 45 H 0.078 0.922 46 H 0.059 0.941 47 H 0.049 0.951 48 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -0.363 -21.823 7.256 23.001 hybrid contribution 0.394 0.372 0.759 0.933 sum 0.031 -21.451 8.015 22.900 Atomic orbital electron populations 1.69876 1.05822 1.26235 1.51018 1.24968 0.94829 0.98952 0.95284 0.86661 0.79911 0.83790 0.78021 1.20786 1.21312 1.20019 1.21246 0.92845 0.90843 1.50124 0.92883 1.18640 0.92590 0.91424 0.94255 1.21622 0.98612 0.94382 0.99975 1.21465 0.97426 0.97838 0.97080 1.22246 0.95228 0.89260 0.98060 1.68618 1.13199 1.04394 1.33605 1.23925 0.99923 0.93643 0.93971 1.23780 0.98525 0.96845 0.87334 1.62833 1.31615 1.20750 1.09722 1.22485 1.00646 0.89038 0.97394 1.21506 0.92750 1.00195 0.86452 1.45550 1.30299 1.47220 1.14214 1.20136 0.79792 0.78033 0.90726 1.90786 1.48386 1.60820 1.43071 1.22256 0.93280 1.03830 0.89936 1.23974 0.95118 0.95033 0.96894 1.21665 0.97204 0.95391 1.00384 1.21588 0.99570 0.94721 0.98697 0.93123 0.95685 0.93684 0.93377 0.94003 0.91973 0.93864 0.89526 0.90314 0.90330 0.93576 0.88301 0.90605 0.90121 0.76441 0.90819 0.86518 0.90377 0.89784 0.92209 0.94135 0.95067 0.88918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.48 11.32 55.43 0.63 -24.85 16 2 C 0.06 1.68 5.30 -17.82 -0.09 1.58 16 3 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.51 -14.08 8.56 -34.44 -0.29 -14.38 16 8 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 9 C 0.05 1.22 2.10 -91.78 -0.19 1.02 16 10 C -0.11 -2.23 5.14 -26.73 -0.14 -2.36 16 11 C -0.10 -1.75 5.38 -26.74 -0.14 -1.90 16 12 C 0.06 1.00 1.60 -67.71 -0.11 0.90 16 13 N -0.48 -6.57 5.99 -230.24 -1.38 -7.95 16 14 C 0.01 0.17 5.43 -2.76 -0.01 0.16 16 15 C 0.04 0.41 3.31 -69.42 -0.23 0.18 16 16 N -0.52 -4.48 4.69 -229.53 -1.08 -5.56 16 17 C 0.03 0.20 5.57 -3.67 -0.02 0.18 16 18 C 0.12 0.59 7.39 -4.31 -0.03 0.56 16 19 N -0.72 -5.53 5.52 -61.05 -0.34 -5.87 16 20 C 0.53 5.71 7.81 -11.68 -0.09 5.62 16 21 O -0.55 -8.26 17.82 5.56 0.10 -8.16 16 22 C 0.04 0.35 5.23 -5.19 -0.03 0.32 16 23 C 0.02 0.21 7.19 -2.65 -0.02 0.19 16 24 C -0.11 -2.08 5.10 -26.76 -0.14 -2.22 16 25 C -0.11 -2.50 4.98 -26.76 -0.13 -2.63 16 26 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 27 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 29 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.04 0.65 7.92 -51.93 -0.41 0.24 16 31 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.04 0.75 7.63 -51.93 -0.40 0.35 16 33 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.08 1.01 7.45 -51.93 -0.39 0.63 16 35 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.05 0.26 8.08 -51.93 -0.42 -0.16 16 37 H 0.10 0.48 7.88 -51.93 -0.41 0.08 16 38 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 40 H 0.40 2.62 8.84 -40.82 -0.36 2.26 16 41 H 0.07 0.61 8.12 -51.93 -0.42 0.19 16 42 H 0.12 1.18 7.35 -51.93 -0.38 0.80 16 43 H 0.08 0.90 7.63 -51.93 -0.40 0.51 16 44 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 46 H 0.04 0.72 7.02 -51.93 -0.36 0.35 16 47 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 48 H 0.09 2.45 6.07 -51.93 -0.32 2.13 16 LS Contribution 365.90 15.07 5.51 5.51 Total: -1.00 -31.24 365.90 -11.70 -42.94 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -8.45 Total: 0.34 kcal Atomic # 6 Polarization: -11.10 SS G_CDS: -1.68 Total: -12.78 kcal Atomic # 7 Polarization: -42.05 SS G_CDS: -2.16 Total: -44.22 kcal Atomic # 8 Polarization: -8.26 SS G_CDS: 0.10 Total: -8.16 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.24 -11.70 -42.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173337598.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.151 kcal (2) G-P(sol) polarization free energy of solvation -31.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds