Wall clock time and date at job start Fri Apr 10 2020 14:30:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00116 * 2 1 4 4 H 1.48501 * 109.46864 * 269.99750 * 3 2 1 5 5 H 1.48500 * 109.47025 * 29.99739 * 3 2 1 6 6 H 1.48496 * 109.47445 * 149.99717 * 3 2 1 7 7 C 1.37879 * 119.99896 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99739 * 179.97438 * 7 2 1 9 9 C 1.50693 * 119.99971 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47183 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47317 * 179.97438 * 10 9 7 12 12 C 1.52995 * 109.47294 * 299.99617 * 11 10 9 13 13 N 1.46900 * 109.47622 * 179.97438 * 12 11 10 14 14 C 1.47963 * 110.99935 * 179.97438 * 13 12 11 15 15 C 1.53937 * 86.18037 * 222.41631 * 14 13 12 16 16 N 1.46900 * 113.73127 * 138.07769 * 15 14 13 17 17 C 1.47185 * 110.99887 * 180.83700 * 16 15 14 18 18 C 1.52992 * 108.71825 * 167.62440 * 17 16 15 19 19 N 1.46018 * 110.03907 * 50.30733 * 18 17 16 20 20 C 1.33714 * 122.92358 * 341.83961 * 19 18 17 21 21 O 1.21278 * 118.61847 * 181.68683 * 20 19 18 22 22 C 1.46909 * 110.99602 * 57.94970 * 16 15 14 23 23 C 1.48185 * 111.06660 * 80.56733 * 13 12 11 24 24 C 1.53001 * 109.46986 * 59.99857 * 12 11 10 25 25 C 1.52995 * 109.47298 * 299.99247 * 9 7 2 26 26 H 0.97004 * 120.00144 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.47380 * 59.99774 * 9 7 2 28 28 H 1.08998 * 109.47529 * 59.99343 * 10 9 7 29 29 H 1.09003 * 109.46948 * 299.99583 * 10 9 7 30 30 H 1.09006 * 109.47298 * 180.02562 * 11 10 9 31 31 H 1.09000 * 109.47250 * 60.00062 * 11 10 9 32 32 H 1.09000 * 109.47335 * 300.00393 * 12 11 10 33 33 H 1.09004 * 113.75123 * 108.10349 * 14 13 12 34 34 H 1.08995 * 113.86305 * 336.74943 * 14 13 12 35 35 H 1.09003 * 113.73518 * 269.26232 * 15 14 13 36 36 H 1.08996 * 109.59827 * 287.41046 * 17 16 15 37 37 H 1.09000 * 109.59716 * 47.71600 * 17 16 15 38 38 H 1.09003 * 109.37746 * 290.13187 * 18 17 16 39 39 H 1.09003 * 109.37887 * 170.47797 * 18 17 16 40 40 H 0.96997 * 118.53285 * 162.12828 * 19 18 17 41 41 H 1.09000 * 109.38197 * 53.50775 * 22 16 15 42 42 H 1.08994 * 109.30127 * 293.76880 * 22 16 15 43 43 H 1.08997 * 113.76199 * 23.24660 * 23 13 12 44 44 H 1.09003 * 113.82757 * 251.80651 * 23 13 12 45 45 H 1.09005 * 109.47092 * 60.00156 * 24 12 11 46 46 H 1.09003 * 109.47307 * 180.02562 * 24 12 11 47 47 H 1.09000 * 109.47335 * 300.00554 * 25 9 7 48 48 H 1.09007 * 109.47092 * 60.00023 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4802 -4.9870 0.0012 12 6 0.6011 -5.0678 1.2507 13 7 -0.1339 -6.3397 1.2511 14 6 -0.9962 -6.4535 2.4481 15 6 -0.5132 -7.9128 2.5306 16 7 -0.2043 -8.3569 3.8964 17 6 0.2694 -9.7504 3.9033 18 6 0.8637 -10.0601 5.2787 19 7 -0.0719 -9.6661 6.3282 20 6 -1.0833 -8.8168 6.1190 21 8 -1.7952 -8.5194 7.0547 22 6 -1.3744 -8.2152 4.7733 23 6 0.7208 -7.4487 1.7366 24 6 -0.3931 -3.9049 1.2508 25 6 0.3711 -2.5800 1.2495 26 1 -0.4850 0.8401 -0.0004 27 1 0.6247 -2.5571 -0.8896 28 1 2.8720 -3.6043 0.8904 29 1 2.8718 -3.6044 -0.8895 30 1 2.1886 -5.8156 0.0016 31 1 0.8533 -5.0451 -0.8886 32 1 1.2281 -5.0098 2.1405 33 1 -2.0603 -6.3546 2.2336 34 1 -0.6720 -5.8355 3.2854 35 1 -1.1455 -8.6155 1.9880 36 1 -0.5664 -10.4217 3.7065 37 1 1.0320 -9.8812 3.1355 38 1 1.7971 -9.5107 5.4014 39 1 1.0627 -11.1291 5.3544 40 1 0.0481 -10.0337 7.2178 41 1 -2.2264 -8.7265 4.3251 42 1 -1.6091 -7.1576 4.8928 43 1 1.5496 -7.1219 2.3646 44 1 1.0264 -8.1439 0.9546 45 1 -1.0201 -3.9628 0.3611 46 1 -1.0192 -3.9621 2.1413 47 1 0.9974 -2.5220 2.1397 48 1 -0.3373 -1.7514 1.2492 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173337598.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:30:05 Heat of formation + Delta-G solvation = -28.780100 kcal Electronic energy + Delta-G solvation = -26021.765580 eV Core-core repulsion = 22496.805275 eV Total energy + Delta-G solvation = -3524.960306 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 307.200 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.74712 -40.82520 -38.81105 -37.56301 -35.36747 -34.48070 -31.72389 -31.32013 -30.82197 -28.50801 -27.17453 -26.64822 -25.09617 -24.05480 -23.01311 -21.85702 -20.66401 -20.32553 -20.23053 -18.52613 -18.38414 -17.65303 -17.12086 -16.78465 -16.61214 -16.56506 -15.78473 -15.57527 -15.13684 -14.88184 -14.68054 -14.53678 -14.34437 -14.27659 -13.85081 -13.62464 -13.44994 -13.10713 -12.93464 -12.90198 -12.75677 -12.65937 -12.42103 -12.39226 -12.15087 -11.81178 -11.69352 -11.61087 -11.45224 -11.18313 -11.02303 -10.67320 -10.46615 -10.34327 -10.11270 -9.71534 -9.52359 -8.06092 -6.20233 1.40651 1.41424 1.48719 1.51468 2.28143 2.44022 2.56304 3.09608 3.20321 3.32139 3.57673 3.89420 3.94140 3.97249 4.02926 4.17744 4.22175 4.33216 4.45928 4.46965 4.55903 4.57357 4.63436 4.69756 4.74136 4.77772 4.81585 4.85245 4.88522 4.95106 4.97085 5.02861 5.12950 5.18857 5.36416 5.39979 5.48674 5.51858 5.63427 5.66067 5.71417 5.81291 5.98650 6.05493 6.15652 6.23135 6.23549 6.43277 6.93029 7.12632 7.47729 8.97643 Molecular weight = 307.20amu Principal moments of inertia in cm(-1) A = 0.024358 B = 0.002744 C = 0.002632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.228112 B =10201.869574 C =10636.338679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.010 3.990 3 Si 0.951 3.049 4 H -0.276 1.276 5 H -0.284 1.284 6 H -0.268 1.268 7 C -0.534 4.534 8 H 0.051 0.949 9 C 0.046 3.954 10 C -0.101 4.101 11 C -0.091 4.091 12 C 0.073 3.927 13 N -0.487 5.487 14 C 0.007 3.993 15 C 0.065 3.935 16 N -0.530 5.530 17 C 0.030 3.970 18 C 0.113 3.887 19 N -0.710 5.710 20 C 0.521 3.479 21 O -0.605 6.605 22 C 0.042 3.958 23 C 0.023 3.977 24 C -0.098 4.098 25 C -0.099 4.099 26 H 0.259 0.741 27 H -0.010 1.010 28 H 0.046 0.954 29 H 0.047 0.953 30 H 0.072 0.928 31 H 0.052 0.948 32 H 0.041 0.959 33 H 0.088 0.912 34 H 0.067 0.933 35 H 0.094 0.906 36 H 0.055 0.945 37 H 0.117 0.883 38 H 0.079 0.921 39 H 0.114 0.886 40 H 0.405 0.595 41 H 0.086 0.914 42 H 0.103 0.897 43 H 0.075 0.925 44 H 0.103 0.897 45 H 0.045 0.955 46 H 0.052 0.948 47 H 0.024 0.976 48 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.483 -24.969 7.521 26.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.188 4.188 3 Si 0.777 3.223 4 H -0.202 1.202 5 H -0.210 1.210 6 H -0.193 1.193 7 C -0.573 4.573 8 H 0.069 0.931 9 C 0.027 3.973 10 C -0.139 4.139 11 C -0.129 4.129 12 C -0.036 4.036 13 N -0.210 5.210 14 C -0.122 4.122 15 C -0.043 4.043 16 N -0.257 5.257 17 C -0.098 4.098 18 C -0.010 4.010 19 N -0.361 5.361 20 C 0.309 3.691 21 O -0.487 6.487 22 C -0.089 4.089 23 C -0.106 4.106 24 C -0.136 4.136 25 C -0.138 4.138 26 H 0.068 0.932 27 H 0.009 0.991 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.090 0.910 31 H 0.071 0.929 32 H 0.059 0.941 33 H 0.106 0.894 34 H 0.085 0.915 35 H 0.111 0.889 36 H 0.073 0.927 37 H 0.135 0.865 38 H 0.097 0.903 39 H 0.132 0.868 40 H 0.242 0.758 41 H 0.103 0.897 42 H 0.121 0.879 43 H 0.093 0.907 44 H 0.121 0.879 45 H 0.063 0.937 46 H 0.071 0.929 47 H 0.043 0.957 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.068 -24.338 7.288 25.428 hybrid contribution -0.011 1.108 0.735 1.330 sum 1.057 -23.230 8.023 24.599 Atomic orbital electron populations 1.70028 1.07149 1.26930 1.51581 1.25752 0.95666 1.02353 0.95010 0.85663 0.78804 0.79647 0.78192 1.20179 1.21016 1.19272 1.21650 0.93011 0.92448 1.50155 0.93108 1.18614 0.93067 0.92380 0.93196 1.21486 0.97845 0.94580 0.99985 1.21352 0.97660 0.96802 0.97091 1.21975 0.94318 0.89861 0.97456 1.68586 1.13948 1.03443 1.34978 1.23961 0.99755 0.95659 0.92781 1.23540 0.97534 0.95430 0.87823 1.62787 1.31117 1.22886 1.08926 1.22649 1.01422 0.87369 0.98353 1.21760 0.91838 1.02251 0.85172 1.45600 1.29458 1.45736 1.15315 1.20392 0.79947 0.78169 0.90627 1.90759 1.50491 1.62867 1.44576 1.22140 0.94077 1.03091 0.89546 1.24035 0.95139 0.93912 0.97484 1.21476 0.97365 0.94533 1.00217 1.21366 0.98747 0.95966 0.97699 0.93185 0.99149 0.93535 0.93410 0.90983 0.92915 0.94094 0.89360 0.91496 0.88867 0.92697 0.86496 0.90308 0.86788 0.75841 0.89652 0.87871 0.90662 0.87858 0.93659 0.92944 0.95740 0.92512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.16 11.32 21.45 0.24 -53.91 16 2 C 0.01 0.59 5.30 84.66 0.45 1.04 16 3 Si 0.95 44.40 29.54 68.60 2.03 46.42 16 4 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 5 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 6 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 7 C -0.53 -30.06 8.56 25.60 0.22 -29.84 16 8 H 0.05 2.80 7.74 -2.91 -0.02 2.78 16 9 C 0.05 2.33 2.10 -11.54 -0.02 2.31 16 10 C -0.10 -4.15 5.14 30.59 0.16 -3.99 16 11 C -0.09 -3.06 5.38 30.59 0.16 -2.90 16 12 C 0.07 2.34 1.60 44.91 0.07 2.41 16 13 N -0.49 -12.44 5.99 -882.34 -5.28 -17.72 16 14 C 0.01 0.17 5.43 86.41 0.47 0.64 16 15 C 0.07 1.03 3.31 46.47 0.15 1.18 16 16 N -0.53 -7.65 4.69 -880.11 -4.13 -11.78 16 17 C 0.03 0.24 5.57 86.25 0.48 0.72 16 18 C 0.11 0.76 7.39 86.47 0.64 1.40 16 19 N -0.71 -9.46 5.52 -466.06 -2.57 -12.03 16 20 C 0.52 10.85 7.81 87.68 0.69 11.53 16 21 O -0.61 -18.30 17.82 -3.02 -0.05 -18.35 16 22 C 0.04 0.73 5.23 85.41 0.45 1.17 16 23 C 0.02 0.42 7.19 86.36 0.62 1.04 16 24 C -0.10 -3.81 5.10 30.58 0.16 -3.65 16 25 C -0.10 -4.79 4.98 30.58 0.15 -4.64 16 26 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 27 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 28 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 29 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.07 2.01 7.92 -2.38 -0.02 2.00 16 31 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.04 1.35 7.63 -2.39 -0.02 1.33 16 33 H 0.09 1.91 8.14 -2.38 -0.02 1.89 16 34 H 0.07 1.67 7.45 -2.39 -0.02 1.65 16 35 H 0.09 1.27 8.14 -2.39 -0.02 1.26 16 36 H 0.05 0.39 8.08 -2.39 -0.02 0.37 16 37 H 0.12 0.58 7.88 -2.39 -0.02 0.56 16 38 H 0.08 0.55 8.14 -2.39 -0.02 0.54 16 39 H 0.11 0.09 8.14 -2.39 -0.02 0.07 16 40 H 0.41 4.62 8.84 -92.71 -0.82 3.81 16 41 H 0.09 1.26 8.12 -2.39 -0.02 1.24 16 42 H 0.10 2.07 7.35 -2.39 -0.02 2.05 16 43 H 0.08 1.48 7.63 -2.39 -0.02 1.46 16 44 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 45 H 0.04 1.88 8.14 -2.38 -0.02 1.86 16 46 H 0.05 1.88 7.02 -2.39 -0.02 1.87 16 47 H 0.02 1.17 8.14 -2.39 -0.02 1.15 16 48 H 0.06 3.14 6.07 -2.38 -0.01 3.13 16 Total: -1.00 -70.35 365.90 -4.81 -75.16 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: 0.11 Total: 13.78 kcal Atomic # 6 Polarization: -26.41 SS G_CDS: 4.84 Total: -21.57 kcal Atomic # 7 Polarization: -83.70 SS G_CDS: -11.74 Total: -95.44 kcal Atomic # 8 Polarization: -18.30 SS G_CDS: -0.05 Total: -18.35 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.42 kcal Total: -70.35 -4.81 -75.16 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173337598.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.379 kcal (2) G-P(sol) polarization free energy of solvation -70.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds