Wall clock time and date at job start Fri Apr 10 2020 14:29:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.48204 * 2 1 4 4 C 1.53284 * 109.45455 * 240.01098 * 2 1 3 5 5 C 1.53176 * 109.06228 * 297.55720 * 4 2 1 6 6 C 1.50697 * 109.54559 * 62.97119 * 5 4 2 7 7 H 1.07992 * 120.00306 * 242.75546 * 6 5 4 8 8 C 1.37884 * 119.99603 * 63.02733 * 6 5 4 9 9 N 1.31511 * 119.99859 * 3.16187 * 8 6 5 10 10 Si 1.86805 * 119.99712 * 183.15409 * 8 6 5 11 11 H 1.48496 * 109.46750 * 90.00534 * 10 8 6 12 12 H 1.48497 * 109.47108 * 210.00068 * 10 8 6 13 13 H 1.48491 * 109.47029 * 330.00243 * 10 8 6 14 14 C 1.53001 * 109.54186 * 183.14865 * 5 4 2 15 15 C 1.50704 * 109.46939 * 65.26849 * 14 5 4 16 16 C 1.38238 * 120.00622 * 89.15119 * 15 14 5 17 17 C 1.38221 * 120.01407 * 179.97438 * 16 15 14 18 18 C 1.38265 * 120.02220 * 0.04294 * 17 16 15 19 19 C 1.38191 * 120.01818 * 359.97438 * 18 17 16 20 20 C 1.38329 * 120.00695 * 268.87439 * 15 14 5 21 21 Cl 1.73601 * 120.01322 * 359.97438 * 20 15 14 22 22 C 1.53178 * 109.11005 * 303.05723 * 5 4 2 23 23 C 1.53096 * 109.16135 * 57.02873 * 22 5 4 24 24 O 1.42903 * 109.41624 * 302.38890 * 23 22 5 25 25 H 1.09001 * 109.47135 * 314.32596 * 1 2 3 26 26 H 1.08995 * 109.47350 * 74.32162 * 1 2 3 27 27 H 1.09003 * 109.47060 * 194.32741 * 1 2 3 28 28 H 1.08994 * 109.47311 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.47340 * 300.02875 * 3 2 1 30 30 H 1.09004 * 109.46666 * 60.02625 * 3 2 1 31 31 H 1.09003 * 109.49697 * 177.72623 * 4 2 1 32 32 H 1.08992 * 109.64391 * 57.47468 * 4 2 1 33 33 H 0.97005 * 119.99416 * 179.97438 * 9 8 6 34 34 H 1.09000 * 109.46827 * 185.26485 * 14 5 4 35 35 H 1.08991 * 109.47477 * 305.26611 * 14 5 4 36 36 H 1.08004 * 119.99342 * 0.02562 * 16 15 14 37 37 H 1.07999 * 119.98770 * 180.02562 * 17 16 15 38 38 H 1.08005 * 119.98718 * 179.97438 * 18 17 16 39 39 H 1.07994 * 120.00503 * 180.02562 * 19 18 17 40 40 H 1.09005 * 109.52251 * 176.92867 * 22 5 4 41 41 H 1.08994 * 109.52797 * 297.06146 * 22 5 4 42 42 H 1.09006 * 109.48318 * 62.37268 * 23 22 5 43 43 H 1.09002 * 109.48317 * 182.39332 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0403 1.4424 0.0000 4 6 2.0405 -0.7224 -1.2518 5 6 1.5756 -2.1814 -1.2120 6 6 0.0700 -2.2320 -1.2516 7 1 -0.4783 -2.6478 -0.4194 8 6 -0.6071 -1.7525 -2.3528 9 7 0.0620 -1.3083 -3.3942 10 14 -2.4751 -1.7339 -2.3655 11 1 -2.9609 -0.4433 -1.8147 12 1 -2.9622 -1.8919 -3.7594 13 1 -2.9868 -2.8517 -1.5326 14 6 2.1448 -2.9329 -2.4171 15 6 3.6464 -2.9967 -2.3059 16 6 4.2461 -4.0481 -1.6382 17 6 5.6234 -4.1069 -1.5365 18 6 6.4018 -3.1139 -2.1018 19 6 5.8035 -2.0621 -2.7692 20 6 4.4250 -2.0061 -2.8768 21 17 3.6729 -0.6896 -3.7222 22 6 2.0764 -2.8322 0.0810 23 6 1.5645 -2.0284 1.2792 24 8 2.0066 -0.6741 1.1665 25 1 -0.3633 0.7181 0.7352 26 1 -0.3634 0.2777 -0.9894 27 1 -0.3633 -0.9957 0.2543 28 1 3.1302 1.4422 -0.0005 29 1 1.6766 1.9565 -0.8897 30 1 1.6774 1.9561 0.8903 31 1 3.1298 -0.6877 -1.2731 32 1 1.6422 -0.2374 -2.1429 33 1 -0.4144 -0.9713 -4.1690 34 1 1.7389 -3.9443 -2.4393 35 1 1.8702 -2.4110 -3.3337 36 1 3.6385 -4.8241 -1.1965 37 1 6.0915 -4.9288 -1.0151 38 1 7.4779 -3.1602 -2.0216 39 1 6.4117 -1.2868 -3.2110 40 1 1.7036 -3.8547 0.1423 41 1 3.1663 -2.8410 0.0860 42 1 0.4749 -2.0549 1.2960 43 1 1.9529 -2.4622 2.2006 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005478243.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:29:04 Heat of formation + Delta-G solvation = -27.885990 kcal Electronic energy + Delta-G solvation = -25570.544407 eV Core-core repulsion = 22220.487529 eV Total energy + Delta-G solvation = -3350.056877 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 308.128 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.72253 -38.44267 -35.65747 -34.86008 -32.72415 -31.81572 -30.47579 -30.23947 -27.48815 -26.70376 -25.42259 -24.68581 -22.74101 -21.81028 -21.04329 -19.26021 -18.39467 -16.44846 -15.81358 -15.33036 -15.25834 -14.84619 -14.57632 -14.36742 -13.65786 -13.51122 -13.29305 -13.08225 -12.74381 -12.42712 -12.16194 -11.92417 -11.59354 -11.32407 -11.20463 -11.14354 -10.89062 -10.87564 -10.79390 -10.63465 -10.51966 -10.42716 -10.17327 -10.04955 -9.75062 -9.71407 -9.29203 -8.88201 -8.73611 -8.35963 -8.27762 -8.22802 -7.76396 -5.99700 -4.00638 1.66669 1.79608 2.91030 3.25441 3.33565 3.36496 4.13982 4.37444 4.76509 5.21202 5.24112 5.28580 5.45603 5.75785 5.88456 5.91363 5.93433 6.01616 6.15707 6.19745 6.20932 6.30491 6.40307 6.44428 6.55516 6.60427 6.67130 6.68324 6.70795 6.83388 6.90974 6.94454 6.99230 7.05136 7.18730 7.28478 7.33556 7.36766 7.60213 7.68178 7.74495 7.90475 8.13366 8.36613 8.45127 8.86390 9.53177 10.99237 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.014451 B = 0.007109 C = 0.006505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.118644 B = 3937.915985 C = 4303.183934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.119 3.881 3 C -0.132 4.132 4 C -0.119 4.119 5 C 0.088 3.912 6 C -0.498 4.498 7 H 0.058 0.942 8 C 0.071 3.929 9 N -0.873 5.873 10 Si 0.875 3.125 11 H -0.279 1.279 12 H -0.288 1.288 13 H -0.276 1.276 14 C -0.085 4.085 15 C -0.041 4.041 16 C -0.116 4.116 17 C -0.122 4.122 18 C -0.135 4.135 19 C -0.118 4.118 20 C -0.038 4.038 21 Cl -0.053 7.053 22 C -0.145 4.145 23 C 0.069 3.931 24 O -0.393 6.393 25 H 0.013 0.987 26 H 0.065 0.935 27 H 0.096 0.904 28 H 0.050 0.950 29 H 0.062 0.938 30 H 0.047 0.953 31 H 0.030 0.970 32 H 0.099 0.901 33 H 0.260 0.740 34 H 0.048 0.952 35 H 0.125 0.875 36 H 0.123 0.877 37 H 0.117 0.883 38 H 0.119 0.881 39 H 0.122 0.878 40 H 0.052 0.948 41 H 0.049 0.951 42 H 0.055 0.945 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.778 -1.385 1.930 8.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.081 3.919 3 C -0.189 4.189 4 C -0.156 4.156 5 C 0.088 3.912 6 C -0.536 4.536 7 H 0.076 0.924 8 C -0.131 4.131 9 N -0.511 5.511 10 Si 0.703 3.297 11 H -0.205 1.205 12 H -0.214 1.214 13 H -0.201 1.201 14 C -0.122 4.122 15 C -0.042 4.042 16 C -0.134 4.134 17 C -0.141 4.141 18 C -0.153 4.153 19 C -0.137 4.137 20 C -0.064 4.064 21 Cl -0.024 7.024 22 C -0.182 4.182 23 C -0.008 4.008 24 O -0.314 6.314 25 H 0.032 0.968 26 H 0.084 0.916 27 H 0.114 0.886 28 H 0.069 0.931 29 H 0.081 0.919 30 H 0.066 0.934 31 H 0.049 0.951 32 H 0.117 0.883 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.142 0.858 36 H 0.141 0.859 37 H 0.135 0.865 38 H 0.137 0.863 39 H 0.140 0.860 40 H 0.071 0.929 41 H 0.067 0.933 42 H 0.073 0.927 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 7.781 -1.086 1.784 8.056 hybrid contribution -1.173 -0.047 -0.253 1.201 sum 6.608 -1.134 1.531 6.877 Atomic orbital electron populations 1.22761 0.95592 1.02869 1.00753 1.21439 0.93695 0.90788 0.86006 1.21731 1.00673 0.95554 1.00970 1.22344 0.97104 0.98608 0.97590 1.17988 0.94339 0.90765 0.88131 1.20926 0.90334 1.39866 1.02429 0.92447 1.24809 0.97226 0.95464 0.95591 1.69774 1.34361 1.41776 1.05141 0.86870 0.87057 0.78523 0.77245 1.20534 1.21381 1.20107 1.21168 0.84730 1.00995 1.05339 1.20537 0.99146 0.91563 0.92952 1.21074 0.94268 0.98509 0.99579 1.21106 0.94072 0.98784 1.00099 1.20857 0.99293 0.95006 1.00184 1.20967 0.92876 0.99143 1.00673 1.20920 0.92425 0.92549 1.00546 1.98381 1.81961 1.46209 1.75818 1.22351 0.99302 0.98814 0.97752 1.22385 0.98979 0.82525 0.96867 1.87737 1.74303 1.24649 1.44671 0.96817 0.91646 0.88615 0.93134 0.91896 0.93399 0.95116 0.88314 0.92968 0.93290 0.85754 0.85875 0.86531 0.86326 0.86039 0.92902 0.93259 0.92714 0.91780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.51 7.08 37.16 0.26 -3.25 16 2 C 0.12 2.52 1.11 -90.47 -0.10 2.42 16 3 C -0.13 -2.48 8.80 37.16 0.33 -2.15 16 4 C -0.12 -2.60 2.22 -26.49 -0.06 -2.66 16 5 C 0.09 1.92 0.28 -155.48 -0.04 1.87 16 6 C -0.50 -11.71 4.24 -34.44 -0.15 -11.86 16 7 H 0.06 1.38 6.27 -52.49 -0.33 1.05 16 8 C 0.07 1.71 3.63 -17.82 -0.06 1.64 16 9 N -0.87 -21.44 9.46 55.43 0.52 -20.92 16 10 Si 0.87 19.62 29.38 -169.99 -4.99 14.63 16 11 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 12 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 13 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 14 C -0.08 -1.83 3.86 -27.88 -0.11 -1.94 16 15 C -0.04 -0.78 3.99 -104.59 -0.42 -1.20 16 16 C -0.12 -1.93 7.72 -39.59 -0.31 -2.24 16 17 C -0.12 -1.77 10.05 -39.58 -0.40 -2.17 16 18 C -0.14 -1.91 10.05 -39.59 -0.40 -2.31 16 19 C -0.12 -1.86 9.83 -39.55 -0.39 -2.25 16 20 C -0.04 -0.69 5.21 -39.50 -0.21 -0.90 16 21 Cl -0.05 -1.01 24.19 -51.86 -1.25 -2.26 16 22 C -0.14 -2.90 4.17 -26.59 -0.11 -3.01 16 23 C 0.07 1.36 6.43 37.21 0.24 1.60 16 24 O -0.39 -8.41 10.24 -35.23 -0.36 -8.77 16 25 H 0.01 0.26 8.06 -51.93 -0.42 -0.16 16 26 H 0.06 1.50 6.50 -51.93 -0.34 1.17 16 27 H 0.10 2.14 3.22 -51.93 -0.17 1.97 16 28 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.03 0.68 5.59 -51.93 -0.29 0.39 16 32 H 0.10 2.34 5.56 -51.93 -0.29 2.06 16 33 H 0.26 6.34 8.31 -40.82 -0.34 6.00 16 34 H 0.05 1.07 8.09 -51.93 -0.42 0.65 16 35 H 0.12 2.93 4.66 -51.93 -0.24 2.69 16 36 H 0.12 1.92 8.00 -52.48 -0.42 1.50 16 37 H 0.12 1.36 8.06 -52.49 -0.42 0.93 16 38 H 0.12 1.33 8.06 -52.48 -0.42 0.90 16 39 H 0.12 1.67 8.06 -52.49 -0.42 1.25 16 40 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.05 0.98 5.89 -51.93 -0.31 0.68 16 42 H 0.05 1.10 5.19 -51.93 -0.27 0.83 16 43 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 323.47 15.07 4.87 4.87 Total: -1.00 -24.84 323.47 -9.13 -33.97 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: -6.01 Total: 6.86 kcal Atomic # 6 Polarization: -26.47 SS G_CDS: -1.92 Total: -28.39 kcal Atomic # 7 Polarization: -21.44 SS G_CDS: 0.52 Total: -20.92 kcal Atomic # 8 Polarization: -8.41 SS G_CDS: -0.36 Total: -8.77 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -4.99 Total: 14.63 kcal Atomic # 17 Polarization: -1.01 SS G_CDS: -1.25 Total: -2.26 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -24.84 -9.13 -33.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005478243.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.084 kcal (2) G-P(sol) polarization free energy of solvation -24.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds