Wall clock time and date at job start Fri Apr 10 2020 14:28:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38130 * 120.01236 * 2 1 4 4 C 1.38238 * 120.09579 * 180.25654 * 3 2 1 5 5 C 1.38546 * 120.12985 * 359.75830 * 4 3 2 6 6 F 1.35097 * 119.98587 * 179.97438 * 5 4 3 7 7 C 1.38291 * 120.02018 * 0.02562 * 5 4 3 8 8 C 1.38907 * 119.90435 * 359.97438 * 7 5 4 9 9 N 1.39722 * 120.06681 * 179.97438 * 8 7 5 10 10 C 1.34779 * 119.99760 * 336.12745 * 9 8 7 11 11 O 1.21377 * 120.00170 * 354.12524 * 10 9 8 12 12 C 1.49358 * 119.99865 * 174.40340 * 10 9 8 13 13 O 1.21357 * 120.00012 * 0.44347 * 12 10 9 14 14 N 1.34772 * 119.99688 * 180.43873 * 12 10 9 15 15 C 1.46505 * 120.00303 * 354.42603 * 14 12 10 16 16 C 1.46503 * 120.00084 * 174.42793 * 14 12 10 17 17 H 1.09007 * 109.46702 * 0.02562 * 16 14 12 18 18 C 1.53001 * 109.47387 * 119.99730 * 16 14 12 19 19 C 1.50698 * 109.47296 * 240.00192 * 16 14 12 20 20 H 1.08001 * 119.99784 * 359.97438 * 19 16 14 21 21 C 1.37874 * 120.00172 * 179.97438 * 19 16 14 22 22 N 1.31511 * 120.00082 * 359.97438 * 21 19 16 23 23 Si 1.86803 * 119.99870 * 179.97438 * 21 19 16 24 24 H 1.48496 * 109.47182 * 60.00230 * 23 21 19 25 25 H 1.48504 * 109.46811 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47271 * 299.99695 * 23 21 19 27 27 H 1.09005 * 109.47601 * 270.23876 * 1 2 3 28 28 H 1.09008 * 109.47172 * 30.23020 * 1 2 3 29 29 H 1.09002 * 109.47327 * 150.23239 * 1 2 3 30 30 H 1.07999 * 119.95163 * 359.97438 * 3 2 1 31 31 H 1.08001 * 119.93279 * 179.74671 * 4 3 2 32 32 H 1.08008 * 120.04918 * 179.97438 * 7 5 4 33 33 H 0.97001 * 120.00498 * 156.12232 * 9 8 7 34 34 H 1.09003 * 109.47003 * 83.81881 * 15 14 12 35 35 H 1.09000 * 109.47038 * 203.81704 * 15 14 12 36 36 H 1.08998 * 109.47207 * 323.81688 * 15 14 12 37 37 H 1.08997 * 109.46858 * 60.00567 * 18 16 14 38 38 H 1.09001 * 109.46632 * 180.02562 * 18 16 14 39 39 H 1.08999 * 109.47305 * 300.00475 * 18 16 14 40 40 H 0.97003 * 120.00144 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1961 0.0000 4 6 3.5802 1.1981 -0.0054 5 6 4.2774 0.0009 -0.0057 6 9 5.6284 0.0062 -0.0114 7 6 3.5909 -1.1996 -0.0012 8 6 2.2018 -1.2029 0.0042 9 7 1.5047 -2.4138 0.0082 10 6 2.0918 -3.5309 -0.4652 11 8 3.1833 -3.4662 -0.9922 12 6 1.3964 -4.8474 -0.3470 13 8 0.2994 -4.9101 0.1681 14 7 1.9873 -5.9657 -0.8125 15 6 3.2542 -5.8753 -1.5427 16 6 1.3627 -7.2718 -0.5884 17 1 0.4343 -7.1400 -0.0326 18 6 1.0606 -7.9307 -1.9359 19 6 2.3008 -8.1486 0.2004 20 1 3.2660 -7.7708 0.5040 21 6 1.9270 -9.4330 0.5344 22 7 0.7516 -9.8928 0.1651 23 14 3.0903 -10.5200 1.5116 24 1 3.3844 -9.8805 2.8191 25 1 2.4570 -11.8439 1.7388 26 1 4.3541 -10.7000 0.7530 27 1 -0.3634 0.0043 1.0277 28 1 -0.3634 0.8880 -0.5174 29 1 -0.3634 -0.8921 -0.5102 30 1 1.6573 2.1311 -0.0004 31 1 4.1178 2.1348 -0.0095 32 1 4.1339 -2.1332 -0.0019 33 1 0.5984 -2.4506 0.3518 34 1 4.0807 -5.8375 -0.8330 35 1 3.3665 -6.7487 -2.1850 36 1 3.2580 -4.9724 -2.1533 37 1 1.9887 -8.0625 -2.4920 38 1 0.5954 -8.9022 -1.7690 39 1 0.3820 -7.2965 -2.5064 40 1 0.4887 -10.7966 0.3998 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132140333.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:28:46 Heat of formation + Delta-G solvation = -73.555860 kcal Electronic energy + Delta-G solvation = -25252.216174 eV Core-core repulsion = 21368.302184 eV Total energy + Delta-G solvation = -3883.913990 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.132 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.96253 -41.09699 -39.36142 -37.94220 -35.95242 -34.76297 -32.86894 -32.52306 -30.28767 -29.54453 -26.91370 -26.35147 -25.35047 -24.89317 -23.07320 -21.64954 -20.81210 -19.41998 -18.26221 -17.42088 -16.71155 -16.41609 -16.14181 -15.87284 -15.72304 -15.53820 -15.24623 -14.96875 -14.46385 -14.19913 -13.94514 -13.64248 -13.48262 -13.24895 -12.67218 -12.44694 -12.39342 -12.23355 -11.98602 -11.91078 -11.64572 -11.38775 -11.14050 -10.90739 -10.82908 -10.80192 -10.61853 -10.30746 -10.24431 -9.30225 -9.00947 -8.77716 -8.51345 -8.28582 -7.82015 -6.16071 -4.24966 0.81402 1.01102 1.80683 2.51946 3.25075 3.29745 3.30820 3.33527 3.63564 3.83252 4.18489 4.33336 4.48687 4.63058 4.67807 4.82234 4.97670 5.15580 5.19480 5.35267 5.41422 5.63596 5.78677 5.90585 5.92490 6.00932 6.10998 6.14346 6.23485 6.47222 6.63982 6.69312 6.76261 6.89877 7.00202 7.19641 7.30027 7.60489 7.72962 7.90671 8.02462 8.27461 8.49736 8.79925 9.41695 10.89291 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.021664 B = 0.003349 C = 0.003109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.142915 B = 8358.778088 C = 9005.099191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.128 4.128 3 C -0.071 4.071 4 C -0.174 4.174 5 C 0.116 3.884 6 F -0.138 7.138 7 C -0.168 4.168 8 C 0.184 3.816 9 N -0.647 5.647 10 C 0.507 3.493 11 O -0.493 6.493 12 C 0.494 3.506 13 O -0.535 6.535 14 N -0.549 5.549 15 C 0.080 3.920 16 C 0.255 3.745 17 H 0.067 0.933 18 C -0.148 4.148 19 C -0.531 4.531 20 H 0.061 0.939 21 C 0.067 3.933 22 N -0.887 5.887 23 Si 0.902 3.098 24 H -0.276 1.276 25 H -0.285 1.285 26 H -0.275 1.275 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.068 0.932 30 H 0.136 0.864 31 H 0.134 0.866 32 H 0.161 0.839 33 H 0.425 0.575 34 H 0.054 0.946 35 H 0.072 0.928 36 H 0.078 0.922 37 H 0.034 0.966 38 H 0.097 0.903 39 H 0.014 0.986 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.457 19.802 -1.807 19.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.130 4.130 3 C -0.089 4.089 4 C -0.193 4.193 5 C 0.096 3.904 6 F -0.116 7.116 7 C -0.189 4.189 8 C 0.088 3.912 9 N -0.293 5.293 10 C 0.291 3.709 11 O -0.366 6.366 12 C 0.274 3.726 13 O -0.415 6.415 14 N -0.280 5.280 15 C -0.063 4.063 16 C 0.156 3.844 17 H 0.085 0.915 18 C -0.206 4.206 19 C -0.569 4.569 20 H 0.080 0.920 21 C -0.136 4.136 22 N -0.525 5.525 23 Si 0.729 3.271 24 H -0.202 1.202 25 H -0.211 1.211 26 H -0.201 1.201 27 H 0.094 0.906 28 H 0.093 0.907 29 H 0.087 0.913 30 H 0.154 0.846 31 H 0.152 0.848 32 H 0.178 0.822 33 H 0.265 0.735 34 H 0.073 0.927 35 H 0.091 0.909 36 H 0.096 0.904 37 H 0.053 0.947 38 H 0.116 0.884 39 H 0.033 0.967 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.580 19.466 -1.917 19.624 hybrid contribution 0.615 -0.667 0.691 1.140 sum 2.194 18.799 -1.226 18.966 Atomic orbital electron populations 1.20761 0.90272 1.03458 1.02855 1.19699 0.96647 0.91367 1.05327 1.20639 0.92888 0.97242 0.98147 1.21082 0.94905 0.97038 1.06300 1.17447 0.76939 0.93997 1.02049 1.91504 1.28897 1.97390 1.93815 1.21392 0.93377 0.99213 1.04890 1.17318 0.90550 0.84911 0.98468 1.43337 1.19169 1.05964 1.60816 1.21061 0.86118 0.85946 0.77744 1.90666 1.20219 1.86111 1.39648 1.19522 0.86406 0.84535 0.82104 1.90724 1.19585 1.85854 1.45294 1.48294 1.22546 1.07237 1.49888 1.22002 0.85168 1.02552 0.96602 1.19197 0.95062 0.75766 0.94392 0.91518 1.22111 0.99018 1.02994 0.96506 1.21244 1.02718 0.97834 1.35137 0.92049 1.24878 0.95379 0.97630 0.95700 1.69860 1.19524 1.17484 1.45593 0.86495 0.80727 0.79389 0.80467 1.20158 1.21080 1.20085 0.90643 0.90736 0.91336 0.84610 0.84767 0.82167 0.73545 0.92723 0.90895 0.90401 0.94718 0.88425 0.96691 0.92450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.88 9.45 36.00 0.34 -0.54 16 2 C -0.13 -1.28 5.90 -104.41 -0.62 -1.89 16 3 C -0.07 -0.61 9.69 -39.62 -0.38 -0.99 16 4 C -0.17 -1.69 10.02 -39.47 -0.40 -2.09 16 5 C 0.12 1.44 7.30 -39.45 -0.29 1.15 16 6 F -0.14 -1.82 17.27 2.25 0.04 -1.78 16 7 C -0.17 -2.32 8.70 -39.31 -0.34 -2.66 16 8 C 0.18 2.34 6.42 -83.76 -0.54 1.80 16 9 N -0.65 -8.88 4.97 -10.30 -0.05 -8.93 16 10 C 0.51 8.53 7.58 -11.63 -0.09 8.44 16 11 O -0.49 -8.57 10.38 5.47 0.06 -8.51 16 12 C 0.49 9.98 7.72 -11.63 -0.09 9.89 16 13 O -0.54 -11.85 15.83 5.49 0.09 -11.77 16 14 N -0.55 -11.78 2.75 -175.80 -0.48 -12.26 16 15 C 0.08 1.47 8.48 59.85 0.51 1.98 16 16 C 0.26 6.34 2.62 -69.08 -0.18 6.16 16 17 H 0.07 1.88 6.91 -51.92 -0.36 1.52 16 18 C -0.15 -3.44 8.96 37.16 0.33 -3.11 16 19 C -0.53 -14.09 8.37 -34.44 -0.29 -14.38 16 20 H 0.06 1.62 7.65 -52.49 -0.40 1.22 16 21 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 22 N -0.89 -24.40 11.32 55.43 0.63 -23.77 16 23 Si 0.90 20.74 29.54 -169.99 -5.02 15.71 16 24 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 25 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 26 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 27 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.07 0.44 8.09 -51.92 -0.42 0.02 16 29 H 0.07 0.56 6.97 -51.93 -0.36 0.19 16 30 H 0.14 0.76 8.06 -52.49 -0.42 0.34 16 31 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 32 H 0.16 2.49 5.73 -52.48 -0.30 2.19 16 33 H 0.43 5.21 6.85 -40.82 -0.28 4.93 16 34 H 0.05 1.00 8.13 -51.93 -0.42 0.58 16 35 H 0.07 1.32 6.44 -51.93 -0.33 0.99 16 36 H 0.08 1.33 5.83 -51.93 -0.30 1.02 16 37 H 0.03 0.75 6.67 -51.93 -0.35 0.40 16 38 H 0.10 2.48 6.07 -51.93 -0.32 2.16 16 39 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 16 40 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 335.93 15.07 5.06 5.06 Total: -1.00 -29.46 335.93 -6.48 -35.94 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -4.67 Total: 4.85 kcal Atomic # 6 Polarization: 7.58 SS G_CDS: -2.12 Total: 5.45 kcal Atomic # 7 Polarization: -45.06 SS G_CDS: 0.09 Total: -44.96 kcal Atomic # 8 Polarization: -20.42 SS G_CDS: 0.14 Total: -20.28 kcal Atomic # 9 Polarization: -1.82 SS G_CDS: 0.04 Total: -1.78 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -29.46 -6.48 -35.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132140333.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.617 kcal (2) G-P(sol) polarization free energy of solvation -29.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds