Wall clock time and date at job start Fri Apr 10 2020 14:28:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38130 * 120.01236 * 2 1 4 4 C 1.38238 * 120.09579 * 180.25654 * 3 2 1 5 5 C 1.38546 * 120.12985 * 359.75830 * 4 3 2 6 6 F 1.35097 * 119.98587 * 179.97438 * 5 4 3 7 7 C 1.38291 * 120.02018 * 0.02562 * 5 4 3 8 8 C 1.38907 * 119.90435 * 359.97438 * 7 5 4 9 9 N 1.39722 * 120.06681 * 179.97438 * 8 7 5 10 10 C 1.34779 * 119.99760 * 336.12745 * 9 8 7 11 11 O 1.21377 * 120.00170 * 354.12524 * 10 9 8 12 12 C 1.49358 * 119.99865 * 174.40340 * 10 9 8 13 13 O 1.21357 * 120.00012 * 0.44347 * 12 10 9 14 14 N 1.34772 * 119.99688 * 180.43873 * 12 10 9 15 15 C 1.46505 * 120.00303 * 354.42603 * 14 12 10 16 16 C 1.46503 * 120.00084 * 174.42793 * 14 12 10 17 17 H 1.09007 * 109.46702 * 0.02562 * 16 14 12 18 18 C 1.53001 * 109.47387 * 119.99730 * 16 14 12 19 19 C 1.50698 * 109.47296 * 240.00192 * 16 14 12 20 20 H 1.08001 * 119.99784 * 359.97438 * 19 16 14 21 21 C 1.37874 * 120.00172 * 179.97438 * 19 16 14 22 22 N 1.31511 * 120.00082 * 359.97438 * 21 19 16 23 23 Si 1.86803 * 119.99870 * 179.97438 * 21 19 16 24 24 H 1.48496 * 109.47182 * 60.00230 * 23 21 19 25 25 H 1.48504 * 109.46811 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47271 * 299.99695 * 23 21 19 27 27 H 1.09005 * 109.47601 * 270.23876 * 1 2 3 28 28 H 1.09008 * 109.47172 * 30.23020 * 1 2 3 29 29 H 1.09002 * 109.47327 * 150.23239 * 1 2 3 30 30 H 1.07999 * 119.95163 * 359.97438 * 3 2 1 31 31 H 1.08001 * 119.93279 * 179.74671 * 4 3 2 32 32 H 1.08008 * 120.04918 * 179.97438 * 7 5 4 33 33 H 0.97001 * 120.00498 * 156.12232 * 9 8 7 34 34 H 1.09003 * 109.47003 * 83.81881 * 15 14 12 35 35 H 1.09000 * 109.47038 * 203.81704 * 15 14 12 36 36 H 1.08998 * 109.47207 * 323.81688 * 15 14 12 37 37 H 1.08997 * 109.46858 * 60.00567 * 18 16 14 38 38 H 1.09001 * 109.46632 * 180.02562 * 18 16 14 39 39 H 1.08999 * 109.47305 * 300.00475 * 18 16 14 40 40 H 0.97003 * 120.00144 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1961 0.0000 4 6 3.5802 1.1981 -0.0054 5 6 4.2774 0.0009 -0.0057 6 9 5.6284 0.0062 -0.0114 7 6 3.5909 -1.1996 -0.0012 8 6 2.2018 -1.2029 0.0042 9 7 1.5047 -2.4138 0.0082 10 6 2.0918 -3.5309 -0.4652 11 8 3.1833 -3.4662 -0.9922 12 6 1.3964 -4.8474 -0.3470 13 8 0.2994 -4.9101 0.1681 14 7 1.9873 -5.9657 -0.8125 15 6 3.2542 -5.8753 -1.5427 16 6 1.3627 -7.2718 -0.5884 17 1 0.4343 -7.1400 -0.0326 18 6 1.0606 -7.9307 -1.9359 19 6 2.3008 -8.1486 0.2004 20 1 3.2660 -7.7708 0.5040 21 6 1.9270 -9.4330 0.5344 22 7 0.7516 -9.8928 0.1651 23 14 3.0903 -10.5200 1.5116 24 1 3.3844 -9.8805 2.8191 25 1 2.4570 -11.8439 1.7388 26 1 4.3541 -10.7000 0.7530 27 1 -0.3634 0.0043 1.0277 28 1 -0.3634 0.8880 -0.5174 29 1 -0.3634 -0.8921 -0.5102 30 1 1.6573 2.1311 -0.0004 31 1 4.1178 2.1348 -0.0095 32 1 4.1339 -2.1332 -0.0019 33 1 0.5984 -2.4506 0.3518 34 1 4.0807 -5.8375 -0.8330 35 1 3.3665 -6.7487 -2.1850 36 1 3.2580 -4.9724 -2.1533 37 1 1.9887 -8.0625 -2.4920 38 1 0.5954 -8.9022 -1.7690 39 1 0.3820 -7.2965 -2.5064 40 1 0.4887 -10.7966 0.3998 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132140333.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:28:45 Heat of formation + Delta-G solvation = -90.999071 kcal Electronic energy + Delta-G solvation = -25252.972569 eV Core-core repulsion = 21368.302184 eV Total energy + Delta-G solvation = -3884.670384 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.132 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.92151 -42.36402 -40.63017 -39.26370 -37.59796 -36.02820 -34.74381 -33.34875 -31.57092 -31.11320 -28.00155 -27.61697 -27.33946 -26.26856 -24.22267 -22.67045 -22.20289 -20.89448 -19.43035 -18.83831 -18.35941 -17.96291 -17.46848 -17.11405 -16.95221 -16.61910 -16.56368 -16.24154 -15.97817 -15.43165 -15.08858 -14.74930 -14.52129 -14.43623 -14.38326 -14.06559 -13.58536 -13.46180 -13.08972 -13.01846 -12.94527 -12.76058 -12.74296 -12.67034 -12.45934 -12.25079 -12.21071 -12.08476 -11.67419 -11.26677 -10.59247 -10.38921 -9.75176 -9.59339 -9.18862 -8.19444 -6.36192 -0.21775 0.13705 0.53430 1.19298 1.42261 1.43160 1.51288 2.02000 2.35548 2.50354 2.57470 3.08537 3.12125 3.33621 3.74619 3.86012 4.04779 4.16583 4.29157 4.39710 4.65431 4.67393 4.70125 4.82631 4.84961 4.90562 4.95899 4.97210 5.00446 5.15488 5.19428 5.27275 5.33372 5.35217 5.41013 5.58834 5.83157 5.88639 5.95983 6.06362 6.40627 6.57469 6.69029 6.91439 7.34731 8.84958 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.021664 B = 0.003349 C = 0.003109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.142915 B = 8358.778088 C = 9005.099191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.116 4.116 3 C -0.060 4.060 4 C -0.159 4.159 5 C 0.093 3.907 6 F -0.148 7.148 7 C -0.188 4.188 8 C 0.156 3.844 9 N -0.631 5.631 10 C 0.516 3.484 11 O -0.502 6.502 12 C 0.489 3.511 13 O -0.561 6.561 14 N -0.560 5.560 15 C 0.086 3.914 16 C 0.260 3.740 17 H 0.026 0.974 18 C -0.135 4.135 19 C -0.547 4.547 20 H 0.058 0.942 21 C 0.023 3.977 22 N -0.912 5.912 23 Si 0.964 3.036 24 H -0.277 1.277 25 H -0.280 1.280 26 H -0.266 1.266 27 H 0.089 0.911 28 H 0.100 0.900 29 H 0.059 0.941 30 H 0.179 0.821 31 H 0.163 0.837 32 H 0.134 0.866 33 H 0.432 0.568 34 H 0.052 0.948 35 H 0.075 0.925 36 H 0.093 0.907 37 H 0.047 0.953 38 H 0.075 0.925 39 H 0.026 0.974 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.620 22.369 -1.818 22.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.119 4.119 3 C -0.078 4.078 4 C -0.178 4.178 5 C 0.073 3.927 6 F -0.127 7.127 7 C -0.209 4.209 8 C 0.062 3.938 9 N -0.278 5.278 10 C 0.298 3.702 11 O -0.377 6.377 12 C 0.271 3.729 13 O -0.441 6.441 14 N -0.290 5.290 15 C -0.056 4.056 16 C 0.159 3.841 17 H 0.044 0.956 18 C -0.194 4.194 19 C -0.585 4.585 20 H 0.076 0.924 21 C -0.178 4.178 22 N -0.550 5.550 23 Si 0.789 3.211 24 H -0.202 1.202 25 H -0.205 1.205 26 H -0.191 1.191 27 H 0.107 0.893 28 H 0.118 0.882 29 H 0.078 0.922 30 H 0.197 0.803 31 H 0.181 0.819 32 H 0.152 0.848 33 H 0.272 0.728 34 H 0.071 0.929 35 H 0.094 0.906 36 H 0.112 0.888 37 H 0.066 0.934 38 H 0.094 0.906 39 H 0.045 0.955 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.750 22.080 -1.931 22.233 hybrid contribution 0.513 -1.309 0.722 1.581 sum 2.263 20.771 -1.209 20.928 Atomic orbital electron populations 1.20875 0.88317 1.04324 1.04008 1.20070 0.98058 0.90609 1.03150 1.21143 0.92483 0.98248 0.95957 1.21470 0.95578 0.96902 1.03841 1.17682 0.76689 0.94669 1.03638 1.91473 1.29675 1.97456 1.94084 1.21271 0.94063 0.98958 1.06599 1.17496 0.90308 0.85140 1.00889 1.43122 1.19233 1.05598 1.59802 1.20250 0.85837 0.85441 0.78639 1.90669 1.20340 1.86070 1.40579 1.20102 0.86151 0.85651 0.81044 1.90694 1.20776 1.86588 1.46066 1.48244 1.23478 1.06630 1.50689 1.22065 0.83732 1.03397 0.96404 1.18839 0.93380 0.77380 0.94528 0.95624 1.21917 0.99663 1.01805 0.95987 1.21475 1.02809 0.98477 1.35739 0.92424 1.25649 0.96793 0.98842 0.96516 1.69980 1.20881 1.17829 1.46316 0.85526 0.79069 0.77643 0.78907 1.20250 1.20508 1.19071 0.89261 0.88153 0.92225 0.80346 0.81941 0.84795 0.72785 0.92900 0.90633 0.88840 0.93423 0.90637 0.95497 0.92321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.39 9.45 71.23 0.67 -0.72 16 2 C -0.12 -1.99 5.90 -19.73 -0.12 -2.10 16 3 C -0.06 -0.78 9.69 22.24 0.22 -0.56 16 4 C -0.16 -2.57 10.02 22.34 0.22 -2.35 16 5 C 0.09 2.22 7.30 22.36 0.16 2.39 16 6 F -0.15 -3.89 17.27 44.97 0.78 -3.11 16 7 C -0.19 -5.22 8.70 22.44 0.20 -5.02 16 8 C 0.16 3.85 6.42 38.21 0.25 4.10 16 9 N -0.63 -17.26 4.97 -304.85 -1.52 -18.77 16 10 C 0.52 17.62 7.58 87.24 0.66 18.28 16 11 O -0.50 -17.76 10.38 -3.33 -0.03 -17.79 16 12 C 0.49 20.30 7.72 87.24 0.67 20.97 16 13 O -0.56 -25.69 15.83 -3.27 -0.05 -25.74 16 14 N -0.56 -24.60 2.75 -828.46 -2.28 -26.88 16 15 C 0.09 3.20 8.48 127.77 1.08 4.28 16 16 C 0.26 13.31 2.62 44.24 0.12 13.42 16 17 H 0.03 1.52 6.91 -2.38 -0.02 1.50 16 18 C -0.14 -6.40 8.96 71.98 0.64 -5.76 16 19 C -0.55 -29.59 8.37 25.60 0.21 -29.38 16 20 H 0.06 3.09 7.65 -2.91 -0.02 3.07 16 21 C 0.02 1.22 5.30 84.65 0.45 1.66 16 22 N -0.91 -51.10 11.32 21.45 0.24 -50.85 16 23 Si 0.96 42.67 29.54 68.60 2.03 44.70 16 24 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 25 H -0.28 -12.06 7.11 99.48 0.71 -11.36 16 26 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 27 H 0.09 0.86 8.14 -2.38 -0.02 0.84 16 28 H 0.10 0.70 8.09 -2.38 -0.02 0.68 16 29 H 0.06 0.83 6.97 -2.39 -0.02 0.82 16 30 H 0.18 0.85 8.06 -2.91 -0.02 0.83 16 31 H 0.16 1.71 8.06 -2.91 -0.02 1.69 16 32 H 0.13 4.38 5.73 -2.91 -0.02 4.37 16 33 H 0.43 10.45 6.85 -92.71 -0.63 9.82 16 34 H 0.05 1.96 8.13 -2.39 -0.02 1.94 16 35 H 0.08 2.73 6.44 -2.39 -0.02 2.71 16 36 H 0.09 3.18 5.83 -2.39 -0.01 3.17 16 37 H 0.05 2.07 6.67 -2.39 -0.02 2.06 16 38 H 0.07 3.93 6.07 -2.39 -0.01 3.91 16 39 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.27 14.20 8.31 -92.71 -0.77 13.43 16 Total: -1.00 -65.80 335.93 5.06 -60.74 By element: Atomic # 1 Polarization: 18.03 SS G_CDS: 0.46 Total: 18.49 kcal Atomic # 6 Polarization: 13.78 SS G_CDS: 5.44 Total: 19.23 kcal Atomic # 7 Polarization: -92.95 SS G_CDS: -3.55 Total: -96.51 kcal Atomic # 8 Polarization: -43.45 SS G_CDS: -0.09 Total: -43.53 kcal Atomic # 9 Polarization: -3.89 SS G_CDS: 0.78 Total: -3.11 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.70 kcal Total: -65.80 5.06 -60.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132140333.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.261 kcal (2) G-P(sol) polarization free energy of solvation -65.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds