Wall clock time and date at job start Fri Apr 10 2020 14:30:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42895 * 114.00093 * 2 1 4 4 C 1.53003 * 109.46734 * 179.97438 * 3 2 1 5 5 H 1.09005 * 110.53555 * 56.37938 * 4 3 2 6 6 N 1.47307 * 110.60173 * 293.54403 * 4 3 2 7 7 C 1.34529 * 106.62361 * 241.31910 * 6 4 3 8 8 O 1.21534 * 123.77016 * 179.97438 * 7 6 4 9 9 N 1.33786 * 112.45614 * 0.02562 * 7 6 4 10 10 C 1.40398 * 124.18086 * 179.97438 * 9 7 6 11 11 C 1.40375 * 125.96469 * 5.02601 * 10 9 7 12 12 C 1.35243 * 107.86990 * 179.97438 * 11 10 9 13 13 C 1.50706 * 126.06907 * 179.97438 * 12 11 10 14 14 N 1.34962 * 107.85356 * 0.26453 * 12 11 10 15 15 C 1.46504 * 125.97933 * 179.73670 * 14 12 11 16 16 C 1.50696 * 109.47523 * 89.99555 * 15 14 12 17 17 H 1.08006 * 119.99777 * 0.02562 * 16 15 14 18 18 C 1.37874 * 120.00444 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99517 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 120.00434 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47013 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47305 * 119.99513 * 20 18 16 23 23 H 1.48496 * 109.46986 * 239.99804 * 20 18 16 24 24 N 1.31193 * 125.97094 * 184.98418 * 10 9 7 25 25 C 1.34772 * 111.64605 * 0.22872 * 9 7 6 26 26 O 1.21238 * 127.16259 * 179.73892 * 25 9 7 27 27 H 1.09002 * 109.47695 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47080 * 300.00386 * 1 2 3 29 29 H 1.09002 * 109.47236 * 59.99896 * 1 2 3 30 30 H 1.09000 * 109.47483 * 60.00334 * 3 2 1 31 31 H 1.08996 * 109.47298 * 299.99342 * 3 2 1 32 32 H 0.97006 * 126.69104 * 61.36134 * 6 4 3 33 33 H 1.08003 * 126.06681 * 359.92867 * 11 10 9 34 34 H 1.08999 * 109.46995 * 90.02682 * 13 12 11 35 35 H 1.08994 * 109.46790 * 210.02369 * 13 12 11 36 36 H 1.08997 * 109.47305 * 330.02810 * 13 12 11 37 37 H 1.09000 * 109.47093 * 210.00226 * 15 14 12 38 38 H 1.09004 * 109.46741 * 329.99468 * 15 14 12 39 39 H 0.97006 * 119.99788 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1845 0.0006 5 1 3.8723 0.5907 -0.8491 6 7 4.0081 0.5947 1.2650 7 6 4.7976 1.5150 1.8476 8 8 5.3550 1.3489 2.9147 9 7 4.8997 2.6341 1.1215 10 6 5.6604 3.7523 1.4985 11 6 6.4981 3.8389 2.6215 12 6 7.0505 5.0733 2.6330 13 6 8.0159 5.6039 3.6614 14 7 6.5786 5.7478 1.5634 15 6 6.9157 7.1257 1.1975 16 6 8.1209 7.1248 0.2929 17 1 8.5887 6.1911 0.0176 18 6 8.6263 8.3159 -0.1834 19 7 8.0563 9.4528 0.1514 20 14 10.1198 8.3147 -1.3054 21 1 10.5696 6.9173 -1.5293 22 1 9.7619 8.9345 -2.6066 23 1 11.2154 9.0914 -0.6718 24 7 5.7130 4.8984 0.8623 25 6 4.1777 2.5575 -0.0139 26 8 4.0666 3.4088 -0.8700 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3634 0.5139 -0.8900 30 1 1.6887 1.8464 0.8900 31 1 1.6887 1.8463 -0.8900 32 1 3.7926 -0.2860 1.6100 33 1 6.6704 3.0585 3.3480 34 1 9.0368 5.3848 3.3485 35 1 7.8887 6.6822 3.7569 36 1 7.8205 5.1284 4.6226 37 1 6.0720 7.5806 0.6785 38 1 7.1384 7.6968 2.0989 39 1 8.4121 10.2909 -0.1834 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348659636.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:30:26 Heat of formation + Delta-G solvation = 1.186368 kcal Electronic energy + Delta-G solvation = -25291.949629 eV Core-core repulsion = 21431.196667 eV Total energy + Delta-G solvation = -3860.752962 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.132 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.65820 -40.43577 -38.67472 -38.27484 -36.13267 -35.06710 -33.43004 -31.64405 -30.98332 -30.18111 -27.25995 -26.76549 -26.51249 -24.67446 -23.65061 -22.63851 -21.76495 -19.74234 -18.94332 -17.77937 -17.46512 -16.82792 -16.65278 -16.63746 -16.22991 -15.86761 -15.28587 -15.26085 -15.12955 -14.46702 -14.23202 -14.19707 -13.98502 -13.17948 -12.95528 -12.57851 -12.57005 -12.45953 -12.24216 -11.87044 -11.77972 -11.49113 -11.17957 -10.90497 -10.80614 -10.64676 -10.42684 -10.28034 -10.19647 -9.77799 -9.71900 -9.62888 -8.66068 -8.20613 -7.72142 -6.27707 -4.34872 1.50016 1.87158 2.41501 2.82570 2.85697 3.17395 3.20354 3.28339 3.34356 3.58273 3.66734 3.91086 4.29218 4.34152 4.48488 4.90046 4.93036 4.96407 5.04681 5.07549 5.16858 5.23657 5.26847 5.53190 5.71428 5.96852 6.04676 6.27469 6.32696 6.53678 6.57429 6.67475 6.82244 6.96694 7.01628 7.25353 7.45978 7.64328 7.84930 7.91657 8.07693 8.45090 8.71357 9.31557 10.80198 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.020327 B = 0.003440 C = 0.003139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.162221 B = 8137.891607 C = 8916.750677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.387 6.387 3 C 0.063 3.937 4 C 0.101 3.899 5 H 0.139 0.861 6 N -0.715 5.715 7 C 0.710 3.290 8 O -0.524 6.524 9 N -0.486 5.486 10 C 0.252 3.748 11 C -0.279 4.279 12 C 0.097 3.903 13 C -0.085 4.085 14 N -0.311 5.311 15 C 0.256 3.744 16 C -0.536 4.536 17 H 0.065 0.935 18 C 0.066 3.934 19 N -0.891 5.891 20 Si 0.907 3.093 21 H -0.271 1.271 22 H -0.280 1.280 23 H -0.280 1.280 24 N -0.275 5.275 25 C 0.519 3.481 26 O -0.423 6.423 27 H 0.090 0.910 28 H 0.044 0.956 29 H 0.046 0.954 30 H 0.065 0.935 31 H 0.080 0.920 32 H 0.445 0.555 33 H 0.156 0.844 34 H 0.080 0.920 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.055 0.945 38 H 0.058 0.942 39 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.619 -17.187 2.960 20.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.306 6.306 3 C -0.015 4.015 4 C -0.008 4.008 5 H 0.156 0.844 6 N -0.382 5.382 7 C 0.410 3.590 8 O -0.395 6.395 9 N -0.228 5.228 10 C 0.002 3.998 11 C -0.310 4.310 12 C -0.035 4.035 13 C -0.143 4.143 14 N -0.094 5.094 15 C 0.139 3.861 16 C -0.575 4.575 17 H 0.084 0.916 18 C -0.137 4.137 19 N -0.529 5.529 20 Si 0.734 3.266 21 H -0.196 1.196 22 H -0.206 1.206 23 H -0.206 1.206 24 N -0.105 5.105 25 C 0.303 3.697 26 O -0.287 6.287 27 H 0.108 0.892 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.083 0.917 31 H 0.098 0.902 32 H 0.290 0.710 33 H 0.173 0.827 34 H 0.099 0.901 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -11.624 -15.869 1.977 19.770 hybrid contribution 0.681 -0.534 -0.014 0.866 sum -10.943 -16.403 1.963 19.816 Atomic orbital electron populations 1.22796 0.79950 1.03144 1.00523 1.87809 1.20543 1.26598 1.95610 1.22604 0.90030 0.86002 1.02873 1.22020 0.95099 0.93092 0.90637 0.84395 1.45389 1.51540 1.18886 1.22344 1.15566 0.80320 0.79745 0.83375 1.90983 1.49676 1.79011 1.19873 1.42766 1.44151 1.14153 1.21749 1.18572 0.97358 0.87243 0.96656 1.20888 1.07609 0.99172 1.03376 1.21035 0.98214 0.92262 0.91941 1.20366 0.97071 1.01774 0.95071 1.49266 1.30648 1.12939 1.16527 1.19796 0.97705 0.70819 0.97762 1.21329 1.12298 0.93666 1.30170 0.91633 1.24921 0.97662 0.94945 0.96212 1.69929 1.40632 0.97775 1.44554 0.86284 0.81727 0.78389 0.80205 1.19554 1.20604 1.20623 1.77577 1.14717 0.99532 1.18639 1.20603 0.79193 0.88542 0.81364 1.90905 1.57530 1.43368 1.36929 0.89176 0.93709 0.93574 0.91724 0.90160 0.70961 0.82658 0.90134 0.90584 0.90572 0.92716 0.92439 0.92260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.29 16 2 O -0.39 -3.02 10.69 -35.23 -0.38 -3.39 16 3 C 0.06 0.53 5.66 37.16 0.21 0.74 16 4 C 0.10 1.00 3.98 -68.20 -0.27 0.73 16 5 H 0.14 1.05 8.14 -51.93 -0.42 0.63 16 6 N -0.72 -7.24 6.23 -59.19 -0.37 -7.61 16 7 C 0.71 10.61 8.58 -88.02 -0.76 9.85 16 8 O -0.52 -9.11 15.49 5.34 0.08 -9.03 16 9 N -0.49 -8.42 2.83 -65.79 -0.19 -8.61 16 10 C 0.25 5.35 7.68 -154.18 -1.18 4.17 16 11 C -0.28 -5.62 9.79 -39.84 -0.39 -6.01 16 12 C 0.10 1.99 6.93 -82.28 -0.57 1.42 16 13 C -0.08 -1.37 10.11 36.01 0.36 -1.01 16 14 N -0.31 -7.40 3.59 -58.32 -0.21 -7.61 16 15 C 0.26 6.57 5.99 -5.19 -0.03 6.54 16 16 C -0.54 -14.80 9.39 -34.44 -0.32 -15.12 16 17 H 0.07 1.87 7.81 -52.48 -0.41 1.46 16 18 C 0.07 1.80 5.46 -17.82 -0.10 1.71 16 19 N -0.89 -25.02 13.29 55.43 0.74 -24.29 16 20 Si 0.91 21.20 29.54 -169.99 -5.02 16.18 16 21 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 23 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 24 N -0.28 -6.66 11.74 31.48 0.37 -6.29 16 25 C 0.52 8.00 7.61 -10.55 -0.08 7.92 16 26 O -0.42 -7.98 17.17 5.59 0.10 -7.88 16 27 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.05 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.44 3.33 8.96 -40.82 -0.37 2.96 16 33 H 0.16 2.92 6.52 -52.48 -0.34 2.58 16 34 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 35 H 0.08 1.24 7.06 -51.93 -0.37 0.88 16 36 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.05 1.51 8.14 -51.93 -0.42 1.08 16 38 H 0.06 1.43 7.03 -51.93 -0.37 1.07 16 39 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 343.05 15.07 5.17 5.17 Total: -1.00 -33.99 343.05 -6.51 -40.51 By element: Atomic # 1 Polarization: 5.43 SS G_CDS: -4.79 Total: 0.64 kcal Atomic # 6 Polarization: 14.23 SS G_CDS: -2.02 Total: 12.21 kcal Atomic # 7 Polarization: -54.74 SS G_CDS: 0.34 Total: -54.40 kcal Atomic # 8 Polarization: -20.11 SS G_CDS: -0.20 Total: -20.31 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -33.99 -6.51 -40.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348659636.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.692 kcal (2) G-P(sol) polarization free energy of solvation -33.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.506 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds