Wall clock time and date at job start Fri Apr 10 2020 14:29:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 114.00045 * 2 1 4 4 C 1.53002 * 115.54925 * 325.66537 * 3 2 1 5 5 C 1.53068 * 117.53937 * 111.38382 * 3 2 1 6 6 C 1.52996 * 59.98789 * 107.46791 * 5 3 2 7 7 H 1.08998 * 117.49588 * 107.50423 * 6 5 3 8 8 N 1.46498 * 117.50079 * 252.50502 * 6 5 3 9 9 C 1.34776 * 119.99739 * 223.74431 * 8 6 5 10 10 O 1.21375 * 120.00071 * 0.02562 * 9 8 6 11 11 C 1.49309 * 120.00022 * 179.97438 * 9 8 6 12 12 O 1.21410 * 120.00020 * 0.02562 * 11 9 8 13 13 N 1.34776 * 120.00022 * 179.97438 * 11 9 8 14 14 C 1.40296 * 119.99881 * 180.02562 * 13 11 9 15 15 C 1.40718 * 126.10241 * 359.97438 * 14 13 11 16 16 N 1.30875 * 108.37956 * 180.02562 * 15 14 13 17 17 N 1.40060 * 108.43398 * 359.97438 * 16 15 14 18 18 C 1.37296 * 126.05543 * 179.73755 * 17 16 15 19 19 H 1.07998 * 120.00126 * 174.14225 * 18 17 16 20 20 C 1.39008 * 119.99989 * 354.14730 * 18 17 16 21 21 N 1.31279 * 120.00006 * 5.94569 * 20 18 17 22 22 Si 1.86797 * 120.00199 * 185.95265 * 20 18 17 23 23 H 1.48499 * 109.47324 * 94.97198 * 22 20 18 24 24 H 1.48501 * 109.47124 * 214.97749 * 22 20 18 25 25 H 1.48503 * 109.46853 * 334.97595 * 22 20 18 26 26 C 1.35783 * 126.09765 * 179.97438 * 14 13 11 27 27 H 1.09001 * 109.47170 * 300.00621 * 1 2 3 28 28 H 1.09003 * 109.46807 * 60.00133 * 1 2 3 29 29 H 1.09002 * 109.46813 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47298 * 274.33128 * 4 3 2 31 31 H 1.09001 * 109.47262 * 34.33485 * 4 3 2 32 32 H 1.09001 * 109.47350 * 154.32920 * 4 3 2 33 33 H 1.09007 * 117.50897 * 359.97438 * 5 3 2 34 34 H 1.09000 * 117.50113 * 214.95660 * 5 3 2 35 35 H 0.97001 * 120.00245 * 43.74164 * 8 6 5 36 36 H 0.97001 * 120.00016 * 0.02562 * 13 11 9 37 37 H 1.08009 * 125.81117 * 359.96563 * 15 14 13 38 38 H 0.97000 * 120.00642 * 180.02562 * 21 20 18 39 39 H 1.08000 * 126.25429 * 0.02562 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.2373 2.3719 -0.7786 5 6 2.7502 1.7507 1.2638 6 6 3.5374 1.3988 0.0000 7 1 3.9915 2.2198 -0.5549 8 7 4.2919 0.1430 0.0006 9 6 5.5463 0.1104 -0.4910 10 8 6.0512 1.1214 -0.9338 11 6 6.3155 -1.1694 -0.4899 12 8 5.8107 -2.1806 -0.0466 13 7 7.5698 -1.2022 -0.9820 14 6 8.2923 -2.4048 -0.9815 15 6 7.8357 -3.6461 -0.5011 16 7 8.7876 -4.5287 -0.6683 17 7 9.8848 -3.8900 -1.2598 18 6 11.0807 -4.4782 -1.5897 19 1 11.8284 -3.9158 -2.1293 20 6 11.3293 -5.7975 -1.2293 21 7 10.3798 -6.5174 -0.6782 22 14 13.0142 -6.5461 -1.5291 23 1 13.8353 -6.4266 -0.2975 24 1 12.8626 -7.9796 -1.8859 25 1 13.6843 -5.8271 -2.6424 26 6 9.5569 -2.5785 -1.4444 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.5280 2.3374 -1.8286 31 1 0.1676 2.1816 -0.6913 32 1 1.4656 3.3565 -0.3706 33 1 2.7934 1.0478 2.0959 34 1 2.6860 2.8031 1.5402 35 1 3.8886 -0.6649 0.3548 36 1 7.9730 -0.3943 -1.3366 37 1 6.8654 -3.8377 -0.0672 38 1 10.5533 -7.4379 -0.4263 39 1 10.1882 -1.8174 -1.8787 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000850708397.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:29:44 Heat of formation + Delta-G solvation = 10.901951 kcal Electronic energy + Delta-G solvation = -24335.691421 eV Core-core repulsion = 20475.359758 eV Total energy + Delta-G solvation = -3860.331663 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.132 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.59357 -39.77338 -39.08748 -37.81737 -35.92902 -34.44745 -33.27875 -32.80621 -30.31221 -29.05318 -28.04706 -26.93685 -25.57018 -24.26566 -22.05488 -21.00208 -20.76005 -20.27933 -19.45287 -18.25592 -17.46179 -17.29088 -16.09892 -15.74607 -15.55086 -15.52175 -15.42697 -15.08269 -14.56578 -14.09076 -13.99361 -13.76600 -13.63468 -13.46986 -13.04897 -12.97101 -12.54707 -12.34630 -11.78262 -11.73789 -11.64172 -11.56066 -11.30824 -11.21218 -11.10182 -10.84991 -10.54026 -10.27011 -9.59855 -9.22320 -9.13272 -8.95651 -8.86015 -8.11407 -6.76645 -6.59910 -4.26712 1.61543 2.49276 2.92930 3.04291 3.07115 3.09864 3.32688 3.51853 3.73806 3.75287 3.92458 4.30871 4.38238 4.40665 4.54333 4.61185 4.95136 4.98197 5.01049 5.03916 5.13342 5.22519 5.29198 5.38644 5.40277 5.57924 5.63636 6.19562 6.21772 6.37733 6.76667 6.83037 6.90618 6.93463 7.17396 7.24519 7.77549 7.86514 8.10833 8.19725 8.49814 8.70625 9.32704 9.61108 10.36227 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.039066 B = 0.002387 C = 0.002289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.571138 B =11729.319750 C =12228.868257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.347 6.347 3 C 0.031 3.969 4 C -0.145 4.145 5 C -0.204 4.204 6 C 0.105 3.895 7 H 0.147 0.853 8 N -0.670 5.670 9 C 0.520 3.480 10 O -0.529 6.529 11 C 0.485 3.515 12 O -0.520 6.520 13 N -0.583 5.583 14 C -0.069 4.069 15 C -0.026 4.026 16 N -0.261 5.261 17 N -0.139 5.139 18 C -0.322 4.322 19 H 0.118 0.882 20 C 0.046 3.954 21 N -0.767 5.767 22 Si 0.936 3.064 23 H -0.271 1.271 24 H -0.276 1.276 25 H -0.263 1.263 26 C -0.076 4.076 27 H 0.044 0.956 28 H 0.048 0.952 29 H 0.089 0.911 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.107 0.893 34 H 0.110 0.890 35 H 0.421 0.579 36 H 0.409 0.591 37 H 0.178 0.822 38 H 0.276 0.724 39 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.273 15.488 1.158 21.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.265 6.265 3 C -0.010 4.010 4 C -0.202 4.202 5 C -0.242 4.242 6 C -0.001 4.001 7 H 0.165 0.835 8 N -0.322 5.322 9 C 0.302 3.698 10 O -0.405 6.405 11 C 0.266 3.734 12 O -0.397 6.397 13 N -0.226 5.226 14 C -0.175 4.175 15 C -0.202 4.202 16 N -0.092 5.092 17 N 0.094 4.906 18 C -0.455 4.455 19 H 0.136 0.864 20 C -0.171 4.171 21 N -0.393 5.393 22 Si 0.760 3.240 23 H -0.196 1.196 24 H -0.201 1.201 25 H -0.187 1.187 26 C -0.228 4.228 27 H 0.062 0.938 28 H 0.067 0.933 29 H 0.108 0.892 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.094 0.906 33 H 0.125 0.875 34 H 0.128 0.872 35 H 0.259 0.741 36 H 0.244 0.756 37 H 0.195 0.805 38 H 0.086 0.914 39 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -14.843 13.835 1.381 20.338 hybrid contribution 0.255 0.817 -0.173 0.873 sum -14.589 14.652 1.207 20.711 Atomic orbital electron populations 1.22841 0.80648 1.03068 1.00236 1.87921 1.20222 1.24069 1.94316 1.22520 0.92600 0.85999 0.99922 1.21828 1.00482 0.97185 1.00725 1.24292 1.03384 1.03147 0.93425 1.22120 0.87423 0.89459 1.01131 0.83522 1.44960 1.13786 1.12124 1.61317 1.20329 0.82187 0.89364 0.77895 1.90719 1.68948 1.35377 1.45475 1.19550 0.83019 0.88458 0.82419 1.90670 1.68616 1.34230 1.46191 1.42128 1.12574 1.11106 1.56750 1.17251 0.94102 0.86644 1.19485 1.24156 1.00587 0.89669 1.05793 1.78255 0.92909 1.18568 1.19439 1.44565 1.09791 1.03508 1.32706 1.19926 0.90258 0.97022 1.38263 0.86422 1.25670 0.99696 0.96255 0.95490 1.70211 1.31368 1.08303 1.29466 0.85789 0.80296 0.78677 0.79277 1.19591 1.20069 1.18715 1.21310 0.96923 0.89146 1.15402 0.93763 0.93327 0.89222 0.90904 0.90845 0.90640 0.87511 0.87226 0.74131 0.75570 0.80532 0.91364 0.83312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 10.05 101.05 1.02 1.21 16 2 O -0.35 -3.62 10.39 -35.23 -0.37 -3.99 16 3 C 0.03 0.28 3.03 -90.58 -0.27 0.00 16 4 C -0.15 -0.89 9.49 37.16 0.35 -0.54 16 5 C -0.20 -1.68 10.05 -26.70 -0.27 -1.95 16 6 C 0.11 1.11 6.15 -67.93 -0.42 0.70 16 7 H 0.15 1.51 7.40 -51.93 -0.38 1.13 16 8 N -0.67 -8.94 5.46 -54.28 -0.30 -9.23 16 9 C 0.52 8.26 7.88 -11.65 -0.09 8.16 16 10 O -0.53 -8.85 16.04 5.48 0.09 -8.77 16 11 C 0.48 9.08 7.85 -11.65 -0.09 8.98 16 12 O -0.52 -10.90 13.62 5.44 0.07 -10.83 16 13 N -0.58 -11.22 5.45 -10.45 -0.06 -11.28 16 14 C -0.07 -1.62 6.90 -83.92 -0.58 -2.19 16 15 C -0.03 -0.69 10.84 -17.02 -0.18 -0.87 16 16 N -0.26 -7.56 10.41 30.81 0.32 -7.24 16 17 N -0.14 -3.81 3.73 -11.40 -0.04 -3.85 16 18 C -0.32 -8.49 10.24 -14.82 -0.15 -8.64 16 19 H 0.12 2.76 7.84 -52.49 -0.41 2.35 16 20 C 0.05 1.19 5.50 -17.50 -0.10 1.10 16 21 N -0.77 -21.29 11.84 55.50 0.66 -20.64 16 22 Si 0.94 18.81 29.56 -169.99 -5.02 13.79 16 23 H -0.27 -5.39 7.11 56.52 0.40 -4.98 16 24 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 25 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 26 C -0.08 -1.81 11.50 -16.38 -0.19 -2.00 16 27 H 0.04 0.26 8.14 -51.93 -0.42 -0.17 16 28 H 0.05 0.28 6.47 -51.93 -0.34 -0.06 16 29 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.37 5.78 -51.93 -0.30 0.07 16 32 H 0.07 0.35 7.90 -51.93 -0.41 -0.06 16 33 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.11 0.67 8.05 -51.93 -0.42 0.25 16 35 H 0.42 5.67 7.86 -40.82 -0.32 5.35 16 36 H 0.41 6.76 8.29 -40.82 -0.34 6.42 16 37 H 0.18 4.52 5.92 -52.48 -0.31 4.21 16 38 H 0.28 6.98 8.31 -40.82 -0.34 6.64 16 39 H 0.15 2.95 8.06 -52.49 -0.42 2.53 16 LS Contribution 341.74 15.07 5.15 5.15 Total: -1.00 -33.31 341.74 -4.95 -38.26 By element: Atomic # 1 Polarization: 19.13 SS G_CDS: -4.48 Total: 14.65 kcal Atomic # 6 Polarization: 4.94 SS G_CDS: -0.98 Total: 3.96 kcal Atomic # 7 Polarization: -52.82 SS G_CDS: 0.58 Total: -52.24 kcal Atomic # 8 Polarization: -23.37 SS G_CDS: -0.20 Total: -23.58 kcal Atomic # 14 Polarization: 18.81 SS G_CDS: -5.02 Total: 13.79 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -33.31 -4.95 -38.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850708397.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.165 kcal (2) G-P(sol) polarization free energy of solvation -33.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.263 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds