Wall clock time and date at job start Fri Apr 10 2020 14:28:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38211 * 120.08778 * 2 1 4 4 F 1.35100 * 119.95188 * 359.97438 * 3 2 1 5 5 C 1.38557 * 120.09522 * 180.25814 * 3 2 1 6 6 C 1.38344 * 120.26261 * 359.44490 * 5 3 2 7 7 C 1.37933 * 120.17435 * 0.55483 * 6 5 3 8 8 C 1.39530 * 120.09089 * 179.97438 * 2 1 3 9 9 C 1.47851 * 120.13092 * 359.97438 * 8 2 1 10 10 O 1.21557 * 119.99813 * 6.26783 * 9 8 2 11 11 N 1.34772 * 120.00295 * 186.27205 * 9 8 2 12 12 C 1.46497 * 120.00421 * 179.97438 * 11 9 8 13 13 H 1.09008 * 110.63958 * 34.29912 * 12 11 9 14 14 C 1.54323 * 110.72529 * 271.16065 * 12 11 9 15 15 N 1.47016 * 107.27308 * 219.44178 * 14 12 11 16 16 C 1.36938 * 125.64813 * 178.89808 * 15 14 12 17 17 H 1.08000 * 120.00060 * 0.02562 * 16 15 14 18 18 C 1.38810 * 119.99924 * 180.02562 * 16 15 14 19 19 N 1.31623 * 119.99990 * 0.02562 * 18 16 15 20 20 Si 1.86810 * 120.00136 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.46703 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.47009 * 119.99805 * 20 18 16 23 23 H 1.48496 * 109.46961 * 239.99993 * 20 18 16 24 24 C 1.47429 * 108.70226 * 358.93957 * 15 14 12 25 25 C 1.55115 * 104.94227 * 24.00275 * 24 15 14 26 26 H 1.08997 * 110.93609 * 81.21968 * 25 24 15 27 27 O 1.42908 * 111.16231 * 205.13374 * 25 24 15 28 28 H 1.09000 * 109.47249 * 96.58534 * 1 2 3 29 29 H 1.09003 * 109.46644 * 216.58587 * 1 2 3 30 30 H 1.09000 * 109.47037 * 336.58595 * 1 2 3 31 31 H 1.07999 * 119.86335 * 179.70584 * 5 3 2 32 32 H 1.07996 * 119.90890 * 180.28002 * 6 5 3 33 33 H 1.08000 * 120.04758 * 179.70099 * 7 6 5 34 34 H 0.97004 * 120.00045 * 359.97438 * 11 9 8 35 35 H 1.09008 * 109.87714 * 338.85957 * 14 12 11 36 36 H 1.08996 * 109.88401 * 99.86621 * 14 12 11 37 37 H 0.96996 * 119.99602 * 179.97438 * 19 18 16 38 38 H 1.09003 * 110.36678 * 142.97235 * 24 15 14 39 39 H 1.09003 * 110.36421 * 265.17544 * 24 15 14 40 40 H 0.96702 * 113.99180 * 292.17326 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1999 1.1959 0.0000 4 9 1.5252 2.3663 -0.0005 5 6 3.5854 1.1961 -0.0054 6 6 4.2828 0.0013 0.0008 7 6 3.6025 -1.1986 0.0008 8 6 2.2065 -1.2073 0.0005 9 6 1.4723 -2.4905 0.0017 10 8 0.2621 -2.4984 -0.1128 11 7 2.1446 -3.6516 0.1297 12 6 1.4170 -4.9231 0.1314 13 1 0.5531 -4.8723 -0.5314 14 6 0.9848 -5.3031 1.5633 15 7 1.1694 -6.7548 1.7043 16 6 0.9198 -7.4849 2.8356 17 1 0.5543 -6.9940 3.7254 18 6 1.1367 -8.8559 2.8386 19 7 1.5827 -9.4541 1.7543 20 14 0.7956 -9.8521 4.3817 21 1 0.3057 -8.9502 5.4548 22 1 -0.2353 -10.8802 4.0894 23 1 2.0460 -10.5177 4.8276 24 6 1.6685 -7.2941 0.4262 25 6 2.3529 -6.0918 -0.2752 26 1 3.3606 -5.9377 0.1107 27 8 2.3707 -6.2639 -1.6938 28 1 -0.3634 -0.1179 -1.0209 29 1 -0.3633 -0.8252 0.6125 30 1 -0.3633 0.9430 0.4084 31 1 4.1230 2.1327 -0.0102 32 1 5.3628 0.0081 0.0011 33 1 4.1490 -2.1301 0.0007 34 1 3.1103 -3.6453 0.2207 35 1 1.6056 -4.7781 2.2895 36 1 -0.0629 -5.0438 1.7155 37 1 1.7346 -10.4121 1.7566 38 1 2.3905 -8.0905 0.6067 39 1 0.8406 -7.6637 -0.1788 40 1 2.9423 -6.9832 -1.9955 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077034513.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:28:19 Heat of formation + Delta-G solvation = -68.862384 kcal Electronic energy + Delta-G solvation = -25185.895694 eV Core-core repulsion = 21302.185229 eV Total energy + Delta-G solvation = -3883.710466 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.132 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.13617 -40.45386 -38.69550 -37.59515 -35.14278 -34.36758 -32.81975 -32.02603 -30.86277 -28.46306 -27.41733 -26.81807 -24.72454 -23.80117 -21.97246 -20.99924 -20.53741 -20.02416 -18.31747 -17.20284 -16.96926 -16.66641 -16.17378 -16.01659 -15.96232 -15.57139 -14.95593 -14.76372 -14.13929 -13.97950 -13.62612 -13.50565 -13.26907 -13.14704 -12.93257 -12.53298 -12.36905 -12.17178 -12.01463 -11.91348 -11.55557 -11.48992 -11.32344 -11.02178 -10.88059 -10.18729 -9.97331 -9.78897 -9.69984 -9.32509 -9.27566 -8.92317 -8.80548 -8.76017 -6.96114 -5.76093 -3.18601 0.48808 0.86808 2.70261 3.12127 3.35129 3.41254 3.43581 3.53106 3.98545 4.34639 4.43275 4.44184 4.55809 4.63776 4.69628 4.96365 5.19625 5.36210 5.37892 5.46480 5.56460 5.59843 5.64052 5.72563 5.78228 5.80233 5.93683 5.98631 6.03833 6.12966 6.25055 6.43481 6.56149 6.62605 6.85725 7.27164 7.48305 7.58697 7.68568 8.04741 8.20654 8.28196 9.10124 9.70498 10.32473 11.28232 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.023387 B = 0.003094 C = 0.002982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.939792 B = 9046.325380 C = 9386.660023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.056 4.056 3 C 0.084 3.916 4 F -0.135 7.135 5 C -0.128 4.128 6 C -0.106 4.106 7 C -0.091 4.091 8 C -0.107 4.107 9 C 0.556 3.444 10 O -0.525 6.525 11 N -0.707 5.707 12 C 0.142 3.858 13 H 0.103 0.897 14 C 0.130 3.870 15 N -0.600 5.600 16 C -0.223 4.223 17 H 0.081 0.919 18 C -0.011 4.011 19 N -0.924 5.924 20 Si 0.918 3.082 21 H -0.279 1.279 22 H -0.289 1.289 23 H -0.290 1.290 24 C 0.130 3.870 25 C 0.067 3.933 26 H 0.062 0.938 27 O -0.565 6.565 28 H 0.080 0.920 29 H 0.104 0.896 30 H 0.060 0.940 31 H 0.138 0.862 32 H 0.139 0.861 33 H 0.134 0.866 34 H 0.397 0.603 35 H 0.030 0.970 36 H 0.035 0.965 37 H 0.253 0.747 38 H 0.113 0.887 39 H 0.026 0.974 40 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.658 17.706 -5.478 20.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.058 4.058 3 C 0.065 3.935 4 F -0.114 7.114 5 C -0.147 4.147 6 C -0.124 4.124 7 C -0.110 4.110 8 C -0.110 4.110 9 C 0.343 3.657 10 O -0.403 6.403 11 N -0.357 5.357 12 C 0.037 3.963 13 H 0.121 0.879 14 C 0.003 3.997 15 N -0.328 5.328 16 C -0.351 4.351 17 H 0.099 0.901 18 C -0.206 4.206 19 N -0.573 5.573 20 Si 0.748 3.252 21 H -0.204 1.204 22 H -0.216 1.216 23 H -0.217 1.217 24 C 0.004 3.996 25 C 0.006 3.994 26 H 0.079 0.921 27 O -0.370 6.370 28 H 0.098 0.902 29 H 0.122 0.878 30 H 0.079 0.921 31 H 0.156 0.844 32 H 0.157 0.843 33 H 0.152 0.848 34 H 0.233 0.767 35 H 0.048 0.952 36 H 0.053 0.947 37 H 0.064 0.936 38 H 0.131 0.869 39 H 0.044 0.956 40 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 6.329 18.013 -5.452 19.856 hybrid contribution 0.681 -0.737 0.780 1.271 sum 7.010 17.276 -4.672 19.221 Atomic orbital electron populations 1.21053 0.88850 1.03684 1.04266 1.20072 0.98007 0.90441 0.97288 1.17412 0.89991 0.80954 1.05127 1.91493 1.80406 1.45483 1.94022 1.21318 0.92115 1.00122 1.01149 1.20919 1.00492 0.91085 0.99930 1.21404 0.92879 0.99037 0.97714 1.19727 0.93501 0.93041 1.04719 1.18074 0.87191 0.83449 0.76975 1.90746 1.13479 1.86870 1.49212 1.45907 1.10628 1.05736 1.73478 1.22063 0.95557 0.80407 0.98250 0.87911 1.21624 0.98602 0.87082 0.92400 1.44288 1.77320 1.00907 1.10241 1.19158 1.37112 0.89523 0.89262 0.90111 1.24804 1.01583 0.96376 0.97829 1.69740 1.51801 1.09262 1.26456 0.85945 0.77471 0.79993 0.81780 1.20432 1.21633 1.21678 1.22587 0.98420 0.93275 0.85348 1.23665 0.97639 0.97232 0.80822 0.92061 1.86419 1.71619 1.57357 1.21600 0.90176 0.87806 0.92112 0.84376 0.84342 0.84780 0.76743 0.95175 0.94733 0.93623 0.86911 0.95605 0.77526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.56 8.61 36.00 0.31 -1.25 16 2 C -0.06 -0.70 5.92 -104.15 -0.62 -1.32 16 3 C 0.08 0.93 7.24 -39.47 -0.29 0.65 16 4 F -0.14 -1.55 16.37 2.25 0.04 -1.52 16 5 C -0.13 -1.10 10.02 -39.42 -0.40 -1.50 16 6 C -0.11 -0.83 10.03 -39.65 -0.40 -1.23 16 7 C -0.09 -0.86 9.52 -39.19 -0.37 -1.24 16 8 C -0.11 -1.33 5.87 -104.98 -0.62 -1.95 16 9 C 0.56 8.53 7.70 -12.33 -0.09 8.43 16 10 O -0.53 -9.61 13.03 5.32 0.07 -9.54 16 11 N -0.71 -10.42 5.07 -52.97 -0.27 -10.68 16 12 C 0.14 2.60 3.00 -66.10 -0.20 2.40 16 13 H 0.10 2.10 7.62 -51.92 -0.40 1.70 16 14 C 0.13 2.76 7.00 -3.07 -0.02 2.74 16 15 N -0.60 -15.03 3.40 -169.94 -0.58 -15.61 16 16 C -0.22 -6.08 10.27 -15.06 -0.15 -6.23 16 17 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 18 C -0.01 -0.29 5.49 -17.43 -0.10 -0.39 16 19 N -0.92 -25.94 10.09 55.49 0.56 -25.38 16 20 Si 0.92 21.59 29.55 -169.99 -5.02 16.57 16 21 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 23 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 24 C 0.13 3.01 5.64 -2.42 -0.01 2.99 16 25 C 0.07 1.21 4.06 -24.47 -0.10 1.11 16 26 H 0.06 1.01 8.00 -51.93 -0.42 0.59 16 27 O -0.57 -9.34 13.48 -35.23 -0.47 -9.81 16 28 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.10 1.52 5.85 -51.93 -0.30 1.22 16 30 H 0.06 0.69 7.46 -51.93 -0.39 0.30 16 31 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 32 H 0.14 0.67 8.06 -52.49 -0.42 0.25 16 33 H 0.13 0.98 6.45 -52.49 -0.34 0.64 16 34 H 0.40 4.68 6.61 -40.82 -0.27 4.41 16 35 H 0.03 0.62 8.03 -51.92 -0.42 0.21 16 36 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 38 H 0.11 2.87 5.87 -51.93 -0.30 2.56 16 39 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.38 4.68 9.12 45.56 0.42 5.10 16 LS Contribution 334.36 15.07 5.04 5.04 Total: -1.00 -31.97 334.36 -7.77 -39.74 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: -4.08 Total: 7.97 kcal Atomic # 6 Polarization: 6.28 SS G_CDS: -3.05 Total: 3.23 kcal Atomic # 7 Polarization: -51.39 SS G_CDS: -0.29 Total: -51.67 kcal Atomic # 8 Polarization: -18.95 SS G_CDS: -0.41 Total: -19.36 kcal Atomic # 9 Polarization: -1.55 SS G_CDS: 0.04 Total: -1.52 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.97 -7.77 -39.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077034513.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.120 kcal (2) G-P(sol) polarization free energy of solvation -31.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds