Wall clock time and date at job start Fri Apr 10 2020 14:28:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38211 * 120.08778 * 2 1 4 4 F 1.35100 * 119.95188 * 359.97438 * 3 2 1 5 5 C 1.38557 * 120.09522 * 180.25814 * 3 2 1 6 6 C 1.38344 * 120.26261 * 359.44490 * 5 3 2 7 7 C 1.37933 * 120.17435 * 0.55483 * 6 5 3 8 8 C 1.39530 * 120.09089 * 179.97438 * 2 1 3 9 9 C 1.47851 * 120.13092 * 359.97438 * 8 2 1 10 10 O 1.21557 * 119.99813 * 6.26783 * 9 8 2 11 11 N 1.34772 * 120.00295 * 186.27205 * 9 8 2 12 12 C 1.46497 * 120.00421 * 179.97438 * 11 9 8 13 13 H 1.09008 * 110.63958 * 34.29912 * 12 11 9 14 14 C 1.54323 * 110.72529 * 271.16065 * 12 11 9 15 15 N 1.47016 * 107.27308 * 219.44178 * 14 12 11 16 16 C 1.36938 * 125.64813 * 178.89808 * 15 14 12 17 17 H 1.08000 * 120.00060 * 0.02562 * 16 15 14 18 18 C 1.38810 * 119.99924 * 180.02562 * 16 15 14 19 19 N 1.31623 * 119.99990 * 0.02562 * 18 16 15 20 20 Si 1.86810 * 120.00136 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.46703 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.47009 * 119.99805 * 20 18 16 23 23 H 1.48496 * 109.46961 * 239.99993 * 20 18 16 24 24 C 1.47429 * 108.70226 * 358.93957 * 15 14 12 25 25 C 1.55115 * 104.94227 * 24.00275 * 24 15 14 26 26 H 1.08997 * 110.93609 * 81.21968 * 25 24 15 27 27 O 1.42908 * 111.16231 * 205.13374 * 25 24 15 28 28 H 1.09000 * 109.47249 * 96.58534 * 1 2 3 29 29 H 1.09003 * 109.46644 * 216.58587 * 1 2 3 30 30 H 1.09000 * 109.47037 * 336.58595 * 1 2 3 31 31 H 1.07999 * 119.86335 * 179.70584 * 5 3 2 32 32 H 1.07996 * 119.90890 * 180.28002 * 6 5 3 33 33 H 1.08000 * 120.04758 * 179.70099 * 7 6 5 34 34 H 0.97004 * 120.00045 * 359.97438 * 11 9 8 35 35 H 1.09008 * 109.87714 * 338.85957 * 14 12 11 36 36 H 1.08996 * 109.88401 * 99.86621 * 14 12 11 37 37 H 0.96996 * 119.99602 * 179.97438 * 19 18 16 38 38 H 1.09003 * 110.36678 * 142.97235 * 24 15 14 39 39 H 1.09003 * 110.36421 * 265.17544 * 24 15 14 40 40 H 0.96702 * 113.99180 * 292.17326 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1999 1.1959 0.0000 4 9 1.5252 2.3663 -0.0005 5 6 3.5854 1.1961 -0.0054 6 6 4.2828 0.0013 0.0008 7 6 3.6025 -1.1986 0.0008 8 6 2.2065 -1.2073 0.0005 9 6 1.4723 -2.4905 0.0017 10 8 0.2621 -2.4984 -0.1128 11 7 2.1446 -3.6516 0.1297 12 6 1.4170 -4.9231 0.1314 13 1 0.5531 -4.8723 -0.5314 14 6 0.9848 -5.3031 1.5633 15 7 1.1694 -6.7548 1.7043 16 6 0.9198 -7.4849 2.8356 17 1 0.5543 -6.9940 3.7254 18 6 1.1367 -8.8559 2.8386 19 7 1.5827 -9.4541 1.7543 20 14 0.7956 -9.8521 4.3817 21 1 0.3057 -8.9502 5.4548 22 1 -0.2353 -10.8802 4.0894 23 1 2.0460 -10.5177 4.8276 24 6 1.6685 -7.2941 0.4262 25 6 2.3529 -6.0918 -0.2752 26 1 3.3606 -5.9377 0.1107 27 8 2.3707 -6.2639 -1.6938 28 1 -0.3634 -0.1179 -1.0209 29 1 -0.3633 -0.8252 0.6125 30 1 -0.3633 0.9430 0.4084 31 1 4.1230 2.1327 -0.0102 32 1 5.3628 0.0081 0.0011 33 1 4.1490 -2.1301 0.0007 34 1 3.1103 -3.6453 0.2207 35 1 1.6056 -4.7781 2.2895 36 1 -0.0629 -5.0438 1.7155 37 1 1.7346 -10.4121 1.7566 38 1 2.3905 -8.0905 0.6067 39 1 0.8406 -7.6637 -0.1788 40 1 2.9423 -6.9832 -1.9955 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001077034513.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:28:19 Heat of formation + Delta-G solvation = -92.078661 kcal Electronic energy + Delta-G solvation = -25186.902428 eV Core-core repulsion = 21302.185229 eV Total energy + Delta-G solvation = -3884.717199 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.132 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.96255 -41.56834 -39.94843 -38.86275 -36.69349 -35.81202 -33.84113 -33.63318 -31.94360 -30.12020 -28.81493 -28.04800 -26.44042 -24.88592 -22.86806 -22.54856 -21.87298 -21.52623 -19.41757 -18.92361 -18.39846 -17.69439 -17.22261 -17.08236 -16.85510 -16.76365 -16.46766 -16.10109 -15.65806 -15.42306 -14.92544 -14.70943 -14.45680 -14.24306 -14.21294 -13.98281 -13.72020 -13.38565 -13.21009 -13.14439 -12.96013 -12.87100 -12.78290 -12.74631 -12.30674 -12.02594 -11.94311 -11.44087 -11.10117 -10.79481 -10.70178 -10.33264 -9.96560 -9.69840 -8.97748 -7.82628 -5.28869 -0.34268 0.10550 1.47654 1.48894 1.59043 1.70620 1.91795 2.46429 2.63332 3.06721 3.18903 3.29337 3.50852 3.60946 3.67645 3.82991 3.88673 3.94252 4.05329 4.17281 4.26704 4.41554 4.57787 4.60074 4.61970 4.67998 4.82789 4.85588 4.92762 5.06696 5.14096 5.23970 5.30803 5.37607 5.43886 5.45070 5.67878 5.78609 6.20919 6.44428 6.87224 7.04549 7.11881 7.68340 8.30303 9.19172 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.023387 B = 0.003094 C = 0.002982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.939792 B = 9046.325380 C = 9386.660023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.078 4.078 3 C 0.069 3.931 4 F -0.142 7.142 5 C -0.114 4.114 6 C -0.093 4.093 7 C -0.084 4.084 8 C -0.127 4.127 9 C 0.553 3.447 10 O -0.564 6.564 11 N -0.694 5.694 12 C 0.157 3.843 13 H 0.078 0.922 14 C 0.131 3.869 15 N -0.618 5.618 16 C -0.244 4.244 17 H 0.080 0.920 18 C -0.060 4.060 19 N -0.945 5.945 20 Si 0.983 3.017 21 H -0.270 1.270 22 H -0.294 1.294 23 H -0.285 1.285 24 C 0.133 3.867 25 C 0.093 3.907 26 H 0.091 0.909 27 O -0.568 6.568 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.069 0.931 31 H 0.169 0.831 32 H 0.181 0.819 33 H 0.159 0.841 34 H 0.415 0.585 35 H 0.041 0.959 36 H 0.014 0.986 37 H 0.251 0.749 38 H 0.092 0.908 39 H -0.010 1.010 40 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.736 19.193 -5.308 22.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.080 4.080 3 C 0.050 3.950 4 F -0.121 7.121 5 C -0.133 4.133 6 C -0.110 4.110 7 C -0.103 4.103 8 C -0.130 4.130 9 C 0.342 3.658 10 O -0.445 6.445 11 N -0.346 5.346 12 C 0.051 3.949 13 H 0.096 0.904 14 C 0.005 3.995 15 N -0.346 5.346 16 C -0.372 4.372 17 H 0.098 0.902 18 C -0.253 4.253 19 N -0.595 5.595 20 Si 0.811 3.189 21 H -0.194 1.194 22 H -0.221 1.221 23 H -0.212 1.212 24 C 0.007 3.993 25 C 0.032 3.968 26 H 0.109 0.891 27 O -0.375 6.375 28 H 0.090 0.910 29 H 0.098 0.902 30 H 0.088 0.912 31 H 0.186 0.814 32 H 0.198 0.802 33 H 0.177 0.823 34 H 0.254 0.746 35 H 0.059 0.941 36 H 0.032 0.968 37 H 0.060 0.940 38 H 0.110 0.890 39 H 0.008 0.992 40 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 9.450 19.523 -5.297 22.328 hybrid contribution -0.270 -1.149 0.693 1.368 sum 9.180 18.375 -4.604 21.050 Atomic orbital electron populations 1.20906 0.90118 1.03035 1.03317 1.20098 0.97555 0.91492 0.98850 1.17597 0.91107 0.80147 1.06181 1.91474 1.80804 1.45626 1.94203 1.21748 0.90885 1.02012 0.98641 1.21401 1.02401 0.89728 0.97485 1.21734 0.91356 1.01087 0.96107 1.19523 0.94830 0.91077 1.07546 1.18611 0.86928 0.84422 0.75803 1.90737 1.15416 1.87478 1.50840 1.45637 1.11315 1.04256 1.73436 1.21561 0.95367 0.82316 0.95696 0.90395 1.21670 0.97728 0.85404 0.94729 1.44533 1.77446 1.02390 1.10235 1.19473 1.37338 0.90290 0.90145 0.90188 1.25612 1.01658 0.97272 1.00729 1.69956 1.52312 1.09176 1.28008 0.84951 0.77095 0.78239 0.78643 1.19424 1.22060 1.21156 1.22419 0.96914 0.95123 0.84872 1.23269 0.98112 0.94073 0.81313 0.89099 1.86394 1.72528 1.58365 1.20237 0.91015 0.90235 0.91248 0.81353 0.80168 0.82346 0.74612 0.94062 0.96774 0.93962 0.88996 0.99185 0.75172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.17 8.61 71.24 0.61 -2.55 16 2 C -0.08 -1.92 5.92 -19.56 -0.12 -2.04 16 3 C 0.07 1.40 7.24 22.34 0.16 1.56 16 4 F -0.14 -3.10 16.37 44.97 0.74 -2.37 16 5 C -0.11 -1.50 10.02 22.37 0.22 -1.27 16 6 C -0.09 -0.97 10.03 22.22 0.22 -0.75 16 7 C -0.08 -1.27 9.52 22.53 0.21 -1.06 16 8 C -0.13 -3.00 5.87 -20.09 -0.12 -3.12 16 9 C 0.55 16.92 7.70 86.79 0.67 17.58 16 10 O -0.56 -21.62 13.03 -3.89 -0.05 -21.67 16 11 N -0.69 -19.60 5.07 -439.78 -2.23 -21.83 16 12 C 0.16 5.75 3.00 46.18 0.14 5.89 16 13 H 0.08 3.29 7.62 -2.38 -0.02 3.27 16 14 C 0.13 5.69 7.00 86.73 0.61 6.30 16 15 N -0.62 -31.67 3.40 -691.57 -2.35 -34.02 16 16 C -0.24 -13.55 10.27 84.03 0.86 -12.68 16 17 H 0.08 4.32 7.83 -2.91 -0.02 4.30 16 18 C -0.06 -3.30 5.49 84.86 0.47 -2.84 16 19 N -0.95 -54.03 10.09 21.65 0.22 -53.81 16 20 Si 0.98 44.63 29.55 68.60 2.03 46.66 16 21 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 22 H -0.29 -13.45 7.11 99.48 0.71 -12.75 16 23 H -0.29 -12.66 7.11 99.48 0.71 -11.95 16 24 C 0.13 6.29 5.64 86.93 0.49 6.78 16 25 C 0.09 3.26 4.06 32.06 0.13 3.39 16 26 H 0.09 2.72 8.00 -2.39 -0.02 2.70 16 27 O -0.57 -17.87 13.48 -148.98 -2.01 -19.88 16 28 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.08 2.52 5.85 -2.39 -0.01 2.51 16 30 H 0.07 1.65 7.46 -2.39 -0.02 1.63 16 31 H 0.17 1.20 8.06 -2.91 -0.02 1.18 16 32 H 0.18 0.48 8.06 -2.91 -0.02 0.45 16 33 H 0.16 1.55 6.45 -2.91 -0.02 1.53 16 34 H 0.42 8.54 6.61 -92.71 -0.61 7.92 16 35 H 0.04 1.70 8.03 -2.38 -0.02 1.68 16 36 H 0.01 0.67 8.14 -2.39 -0.02 0.65 16 37 H 0.25 13.83 8.31 -92.71 -0.77 13.06 16 38 H 0.09 4.77 5.87 -2.39 -0.01 4.75 16 39 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 40 H 0.40 9.04 9.12 -74.06 -0.68 8.37 16 Total: -1.00 -72.74 334.36 0.73 -72.02 By element: Atomic # 1 Polarization: 19.88 SS G_CDS: -0.19 Total: 19.69 kcal Atomic # 6 Polarization: 10.63 SS G_CDS: 4.57 Total: 15.20 kcal Atomic # 7 Polarization: -105.29 SS G_CDS: -4.36 Total: -109.65 kcal Atomic # 8 Polarization: -39.49 SS G_CDS: -2.06 Total: -41.55 kcal Atomic # 9 Polarization: -3.10 SS G_CDS: 0.74 Total: -2.37 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -72.74 0.73 -72.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077034513.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.062 kcal (2) G-P(sol) polarization free energy of solvation -72.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds