Wall clock time and date at job start Fri Apr 10 2020 14:28:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38242 * 119.93734 * 2 1 4 4 C 1.38411 * 120.34054 * 180.02562 * 3 2 1 5 5 C 1.37906 * 120.21855 * 359.73453 * 4 3 2 6 6 C 1.39619 * 119.87137 * 0.49443 * 5 4 3 7 7 C 1.47698 * 120.16731 * 179.78924 * 6 5 4 8 8 O 1.21561 * 120.00265 * 179.72098 * 7 6 5 9 9 N 1.34781 * 119.99649 * 359.71931 * 7 6 5 10 10 C 1.46494 * 120.00041 * 180.02562 * 9 7 6 11 11 H 1.08996 * 110.91646 * 31.09543 * 10 9 7 12 12 C 1.54916 * 111.00343 * 267.19869 * 10 9 7 13 13 N 1.47425 * 104.82925 * 204.91598 * 12 10 9 14 14 C 1.36938 * 125.64396 * 204.16470 * 13 12 10 15 15 H 1.07994 * 120.00714 * 354.83108 * 14 13 12 16 16 C 1.38817 * 119.99760 * 174.83686 * 14 13 12 17 17 N 1.31621 * 120.00093 * 7.06129 * 16 14 13 18 18 Si 1.86802 * 120.00053 * 187.05912 * 16 14 13 19 19 H 1.48501 * 109.46907 * 94.98523 * 18 16 14 20 20 H 1.48496 * 109.47377 * 214.98668 * 18 16 14 21 21 H 1.48501 * 109.47212 * 334.98993 * 18 16 14 22 22 C 1.47022 * 108.70707 * 24.12744 * 13 12 10 23 23 C 1.54328 * 107.26739 * 358.93998 * 22 13 12 24 24 H 1.09003 * 110.71839 * 96.16964 * 23 22 13 25 25 O 1.42907 * 110.71808 * 219.26562 * 23 22 13 26 26 C 1.38275 * 119.94445 * 179.97438 * 2 1 3 27 27 F 1.35105 * 120.10779 * 359.97438 * 26 2 1 28 28 H 1.09000 * 109.47490 * 270.02158 * 1 2 3 29 29 H 1.08996 * 109.47380 * 30.02953 * 1 2 3 30 30 H 1.09004 * 109.46951 * 150.02821 * 1 2 3 31 31 H 1.08007 * 119.83454 * 0.02562 * 3 2 1 32 32 H 1.07999 * 119.89741 * 179.97438 * 4 3 2 33 33 H 1.07988 * 120.06706 * 180.28242 * 5 4 3 34 34 H 0.97006 * 119.99924 * 0.02562 * 9 7 6 35 35 H 1.08996 * 110.36701 * 86.07716 * 12 10 9 36 36 H 1.09001 * 110.46014 * 323.80121 * 12 10 9 37 37 H 0.96998 * 120.00290 * 180.02562 * 17 16 14 38 38 H 1.08999 * 109.88197 * 239.52607 * 22 13 12 39 39 H 1.08997 * 110.01106 * 118.42458 * 22 13 12 40 40 H 0.96701 * 113.99683 * 296.15449 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1980 0.0000 4 6 3.5810 1.2077 -0.0005 5 6 4.2835 0.0210 0.0045 6 6 3.5958 -1.1941 -0.0004 7 6 4.3416 -2.4690 0.0002 8 8 3.7399 -3.5252 0.0011 9 7 5.6894 -2.4612 -0.0003 10 6 6.4292 -3.7257 -0.0003 11 1 5.8730 -4.5019 -0.5257 12 6 6.7711 -4.1689 1.4442 13 7 7.9616 -5.0270 1.3038 14 6 8.3522 -6.0003 2.1843 15 1 7.8170 -6.1351 3.1126 16 6 9.4362 -6.8137 1.8838 17 7 10.1734 -6.5624 0.8228 18 14 9.8487 -8.2649 2.9853 19 1 9.2248 -9.4958 2.4366 20 1 11.3222 -8.4400 3.0424 21 1 9.3268 -8.0127 4.3525 22 6 8.6596 -4.6654 0.0613 23 6 7.8429 -3.5429 -0.6129 24 1 8.2497 -2.5641 -0.3588 25 8 7.8107 -3.7226 -2.0303 26 6 2.1973 -1.1982 0.0005 27 9 1.5228 -2.3688 0.0016 28 1 -0.3634 0.0004 1.0276 29 1 -0.3634 0.8897 -0.5143 30 1 -0.3633 -0.8903 -0.5134 31 1 1.6532 2.1312 0.0004 32 1 4.1127 2.1477 -0.0009 33 1 5.3633 0.0314 0.0086 34 1 6.1696 -1.6183 -0.0007 35 1 5.9441 -4.7346 1.8732 36 1 6.9992 -3.3023 2.0648 37 1 10.9306 -7.1310 0.6126 38 1 8.7146 -5.5313 -0.5984 39 1 9.6640 -4.3080 0.2882 40 1 8.6770 -3.6567 -2.4548 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077040369.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:28:22 Heat of formation + Delta-G solvation = -73.203296 kcal Electronic energy + Delta-G solvation = -25163.182975 eV Core-core repulsion = 21279.284273 eV Total energy + Delta-G solvation = -3883.898702 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.132 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -48.92282 -40.14796 -38.83292 -37.68792 -35.08074 -34.20874 -33.20621 -31.71725 -30.94479 -28.44650 -27.41371 -26.92560 -24.78921 -23.73373 -22.08581 -20.78929 -20.50839 -20.10675 -18.03232 -17.31184 -17.09301 -16.64809 -16.57687 -15.89955 -15.58491 -15.14869 -14.72677 -14.49643 -14.36676 -14.04258 -13.68295 -13.64021 -13.35881 -13.09456 -12.80512 -12.70351 -12.53150 -12.14397 -12.06680 -12.01777 -11.56369 -11.51529 -11.26345 -10.90999 -10.81251 -10.16394 -9.92653 -9.86917 -9.84538 -9.34565 -9.27844 -8.93107 -8.82225 -8.61546 -6.92210 -5.78506 -3.11637 0.49080 0.85435 2.74956 3.16026 3.39876 3.45521 3.46725 3.54686 3.96580 4.30111 4.40425 4.46827 4.57401 4.60767 4.80478 4.82980 5.14252 5.21609 5.27046 5.33035 5.41376 5.56892 5.61774 5.64991 5.72394 5.77771 5.81721 5.88778 5.99005 6.07281 6.10697 6.48322 6.50701 6.61194 6.86392 7.28817 7.46917 7.61723 7.73034 8.10453 8.16105 8.33410 9.13939 9.74225 10.37514 11.33777 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.025299 B = 0.003109 C = 0.002947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.498655 B = 9005.052869 C = 9500.185841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.133 4.133 3 C -0.071 4.071 4 C -0.135 4.135 5 C -0.064 4.064 6 C -0.162 4.162 7 C 0.555 3.445 8 O -0.521 6.521 9 N -0.708 5.708 10 C 0.138 3.862 11 H 0.107 0.893 12 C 0.130 3.870 13 N -0.600 5.600 14 C -0.230 4.230 15 H 0.081 0.919 16 C -0.006 4.006 17 N -0.922 5.922 18 Si 0.914 3.086 19 H -0.288 1.288 20 H -0.291 1.291 21 H -0.280 1.280 22 C 0.152 3.848 23 C 0.069 3.931 24 H 0.057 0.943 25 O -0.563 6.563 26 C 0.156 3.844 27 F -0.112 7.112 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.136 0.864 32 H 0.136 0.864 33 H 0.136 0.864 34 H 0.396 0.604 35 H 0.051 0.949 36 H 0.024 0.976 37 H 0.253 0.747 38 H 0.063 0.937 39 H 0.048 0.952 40 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.812 19.643 -3.841 23.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.134 4.134 3 C -0.090 4.090 4 C -0.153 4.153 5 C -0.083 4.083 6 C -0.166 4.166 7 C 0.341 3.659 8 O -0.398 6.398 9 N -0.359 5.359 10 C 0.033 3.967 11 H 0.125 0.875 12 C 0.002 3.998 13 N -0.327 5.327 14 C -0.358 4.358 15 H 0.099 0.901 16 C -0.202 4.202 17 N -0.569 5.569 18 Si 0.744 3.256 19 H -0.215 1.215 20 H -0.217 1.217 21 H -0.205 1.205 22 C 0.027 3.973 23 C 0.009 3.991 24 H 0.075 0.925 25 O -0.368 6.368 26 C 0.136 3.864 27 F -0.090 7.090 28 H 0.094 0.906 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.153 0.847 32 H 0.153 0.847 33 H 0.154 0.846 34 H 0.231 0.769 35 H 0.070 0.930 36 H 0.042 0.958 37 H 0.064 0.936 38 H 0.081 0.919 39 H 0.066 0.934 40 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -13.727 18.562 -3.707 23.382 hybrid contribution 1.176 -0.432 0.453 1.332 sum -12.551 18.131 -3.255 22.290 Atomic orbital electron populations 1.20737 0.89665 1.03564 1.03062 1.19954 0.97404 0.91621 1.04378 1.21095 0.94220 0.97019 0.96623 1.21127 0.94130 0.98301 1.01790 1.21242 1.00257 0.90842 0.95930 1.20168 0.92535 0.94980 1.08925 1.17960 0.82451 0.88251 0.77262 1.90856 1.68300 1.31910 1.48692 1.45789 1.05638 1.09744 1.74702 1.22303 0.90999 0.85439 0.97921 0.87474 1.21856 0.91064 0.94257 0.92580 1.44237 1.24379 1.40340 1.23775 1.19096 1.11232 1.07036 0.98432 0.90086 1.24838 0.97917 0.99359 0.98114 1.69930 1.19427 1.39599 1.27955 0.86070 0.77218 0.82749 0.79571 1.21464 1.21735 1.20534 1.21845 0.93494 0.93877 0.88110 1.23451 0.95707 0.98931 0.81039 0.92526 1.86471 1.34873 1.95752 1.19700 1.17555 0.88577 0.81606 0.98705 1.91589 1.79468 1.45315 1.92642 0.90601 0.90786 0.90920 0.84661 0.84650 0.84610 0.76941 0.93042 0.95848 0.93627 0.91924 0.93428 0.77619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.84 9.83 36.01 0.35 -0.49 16 2 C -0.13 -1.29 5.88 -104.60 -0.62 -1.90 16 3 C -0.07 -0.53 9.69 -39.52 -0.38 -0.91 16 4 C -0.14 -0.99 10.03 -39.64 -0.40 -1.39 16 5 C -0.06 -0.60 9.54 -39.19 -0.37 -0.97 16 6 C -0.16 -2.15 5.88 -104.91 -0.62 -2.77 16 7 C 0.55 9.38 7.77 -12.39 -0.10 9.28 16 8 O -0.52 -11.07 14.98 5.31 0.08 -10.99 16 9 N -0.71 -10.97 5.15 -52.72 -0.27 -11.25 16 10 C 0.14 2.67 3.15 -65.78 -0.21 2.47 16 11 H 0.11 2.40 7.54 -51.93 -0.39 2.01 16 12 C 0.13 2.82 6.93 -2.53 -0.02 2.80 16 13 N -0.60 -15.45 3.39 -170.07 -0.58 -16.03 16 14 C -0.23 -6.47 10.27 -15.06 -0.15 -6.63 16 15 H 0.08 2.22 7.84 -52.49 -0.41 1.80 16 16 C -0.01 -0.17 5.48 -17.43 -0.10 -0.26 16 17 N -0.92 -26.75 10.36 55.49 0.57 -26.18 16 18 Si 0.91 22.22 29.56 -169.99 -5.02 17.19 16 19 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 20 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 21 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 22 C 0.15 3.61 5.16 -3.06 -0.02 3.60 16 23 C 0.07 1.27 3.97 -24.90 -0.10 1.17 16 24 H 0.06 0.90 8.00 -51.93 -0.42 0.48 16 25 O -0.56 -9.81 13.40 -35.23 -0.47 -10.28 16 26 C 0.16 2.08 7.22 -38.96 -0.28 1.79 16 27 F -0.11 -1.78 14.76 2.25 0.03 -1.75 16 28 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.38 8.08 -51.93 -0.42 -0.04 16 30 H 0.07 0.59 7.64 -51.93 -0.40 0.20 16 31 H 0.14 0.60 8.06 -52.48 -0.42 0.17 16 32 H 0.14 0.60 8.06 -52.49 -0.42 0.18 16 33 H 0.14 0.97 6.40 -52.49 -0.34 0.63 16 34 H 0.40 4.71 6.60 -40.82 -0.27 4.44 16 35 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 38 H 0.06 1.68 7.21 -51.93 -0.37 1.30 16 39 H 0.05 1.20 7.61 -51.93 -0.40 0.81 16 40 H 0.38 4.96 9.12 45.56 0.42 5.38 16 LS Contribution 338.60 15.07 5.10 5.10 Total: -1.00 -35.06 338.60 -7.80 -42.86 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: -4.24 Total: 5.53 kcal Atomic # 6 Polarization: 8.79 SS G_CDS: -3.00 Total: 5.79 kcal Atomic # 7 Polarization: -53.18 SS G_CDS: -0.27 Total: -53.45 kcal Atomic # 8 Polarization: -20.88 SS G_CDS: -0.39 Total: -21.27 kcal Atomic # 9 Polarization: -1.78 SS G_CDS: 0.03 Total: -1.75 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -35.06 -7.80 -42.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077040369.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.345 kcal (2) G-P(sol) polarization free energy of solvation -35.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds