Wall clock time and date at job start Fri Apr 10 2020 14:28:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38242 * 119.93734 * 2 1 4 4 C 1.38411 * 120.34054 * 180.02562 * 3 2 1 5 5 C 1.37906 * 120.21855 * 359.73453 * 4 3 2 6 6 C 1.39619 * 119.87137 * 0.49443 * 5 4 3 7 7 C 1.47698 * 120.16731 * 179.78924 * 6 5 4 8 8 O 1.21561 * 120.00265 * 179.72098 * 7 6 5 9 9 N 1.34781 * 119.99649 * 359.71931 * 7 6 5 10 10 C 1.46494 * 120.00041 * 180.02562 * 9 7 6 11 11 H 1.08996 * 110.91646 * 31.09543 * 10 9 7 12 12 C 1.54916 * 111.00343 * 267.19869 * 10 9 7 13 13 N 1.47425 * 104.82925 * 204.91598 * 12 10 9 14 14 C 1.36938 * 125.64396 * 204.16470 * 13 12 10 15 15 H 1.07994 * 120.00714 * 354.83108 * 14 13 12 16 16 C 1.38817 * 119.99760 * 174.83686 * 14 13 12 17 17 N 1.31621 * 120.00093 * 7.06129 * 16 14 13 18 18 Si 1.86802 * 120.00053 * 187.05912 * 16 14 13 19 19 H 1.48501 * 109.46907 * 94.98523 * 18 16 14 20 20 H 1.48496 * 109.47377 * 214.98668 * 18 16 14 21 21 H 1.48501 * 109.47212 * 334.98993 * 18 16 14 22 22 C 1.47022 * 108.70707 * 24.12744 * 13 12 10 23 23 C 1.54328 * 107.26739 * 358.93998 * 22 13 12 24 24 H 1.09003 * 110.71839 * 96.16964 * 23 22 13 25 25 O 1.42907 * 110.71808 * 219.26562 * 23 22 13 26 26 C 1.38275 * 119.94445 * 179.97438 * 2 1 3 27 27 F 1.35105 * 120.10779 * 359.97438 * 26 2 1 28 28 H 1.09000 * 109.47490 * 270.02158 * 1 2 3 29 29 H 1.08996 * 109.47380 * 30.02953 * 1 2 3 30 30 H 1.09004 * 109.46951 * 150.02821 * 1 2 3 31 31 H 1.08007 * 119.83454 * 0.02562 * 3 2 1 32 32 H 1.07999 * 119.89741 * 179.97438 * 4 3 2 33 33 H 1.07988 * 120.06706 * 180.28242 * 5 4 3 34 34 H 0.97006 * 119.99924 * 0.02562 * 9 7 6 35 35 H 1.08996 * 110.36701 * 86.07716 * 12 10 9 36 36 H 1.09001 * 110.46014 * 323.80121 * 12 10 9 37 37 H 0.96998 * 120.00290 * 180.02562 * 17 16 14 38 38 H 1.08999 * 109.88197 * 239.52607 * 22 13 12 39 39 H 1.08997 * 110.01106 * 118.42458 * 22 13 12 40 40 H 0.96701 * 113.99683 * 296.15449 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1980 0.0000 4 6 3.5810 1.2077 -0.0005 5 6 4.2835 0.0210 0.0045 6 6 3.5958 -1.1941 -0.0004 7 6 4.3416 -2.4690 0.0002 8 8 3.7399 -3.5252 0.0011 9 7 5.6894 -2.4612 -0.0003 10 6 6.4292 -3.7257 -0.0003 11 1 5.8730 -4.5019 -0.5257 12 6 6.7711 -4.1689 1.4442 13 7 7.9616 -5.0270 1.3038 14 6 8.3522 -6.0003 2.1843 15 1 7.8170 -6.1351 3.1126 16 6 9.4362 -6.8137 1.8838 17 7 10.1734 -6.5624 0.8228 18 14 9.8487 -8.2649 2.9853 19 1 9.2248 -9.4958 2.4366 20 1 11.3222 -8.4400 3.0424 21 1 9.3268 -8.0127 4.3525 22 6 8.6596 -4.6654 0.0613 23 6 7.8429 -3.5429 -0.6129 24 1 8.2497 -2.5641 -0.3588 25 8 7.8107 -3.7226 -2.0303 26 6 2.1973 -1.1982 0.0005 27 9 1.5228 -2.3688 0.0016 28 1 -0.3634 0.0004 1.0276 29 1 -0.3634 0.8897 -0.5143 30 1 -0.3633 -0.8903 -0.5134 31 1 1.6532 2.1312 0.0004 32 1 4.1127 2.1477 -0.0009 33 1 5.3633 0.0314 0.0086 34 1 6.1696 -1.6183 -0.0007 35 1 5.9441 -4.7346 1.8732 36 1 6.9992 -3.3023 2.0648 37 1 10.9306 -7.1310 0.6126 38 1 8.7146 -5.5313 -0.5984 39 1 9.6640 -4.3080 0.2882 40 1 8.6770 -3.6567 -2.4548 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001077040369.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:28:21 Heat of formation + Delta-G solvation = -100.216864 kcal Electronic energy + Delta-G solvation = -25164.354371 eV Core-core repulsion = 21279.284273 eV Total energy + Delta-G solvation = -3885.070098 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.132 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.94247 -41.35837 -39.94939 -39.11422 -36.70925 -35.73578 -34.19441 -33.42441 -31.81844 -30.20622 -28.87818 -27.87929 -26.52657 -24.95204 -22.82601 -22.46234 -22.04992 -21.51890 -19.30174 -18.73420 -18.44087 -17.96534 -17.70457 -17.17854 -16.90908 -16.45929 -16.02469 -15.89744 -15.70687 -15.52363 -14.98183 -14.51856 -14.39820 -14.32810 -14.23059 -14.20265 -13.76517 -13.38525 -13.25806 -13.19493 -12.84355 -12.79144 -12.75710 -12.70992 -12.25745 -12.10100 -11.92191 -11.59025 -11.22778 -10.90249 -10.78482 -10.34678 -9.95211 -9.67123 -8.99725 -7.92914 -5.28711 -0.34324 0.14184 1.43648 1.46968 1.54982 1.71562 1.87827 2.45258 2.64806 3.08608 3.17789 3.27316 3.46741 3.50396 3.64832 3.84706 3.92545 4.01462 4.12480 4.13729 4.24204 4.39261 4.50283 4.53498 4.73098 4.77209 4.78701 4.91379 4.93434 5.07194 5.19715 5.27082 5.31154 5.34036 5.35585 5.43994 5.63337 5.83105 6.10605 6.39776 6.84889 7.01750 7.08781 7.65823 8.28729 9.17419 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.025299 B = 0.003109 C = 0.002947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.498655 B = 9005.052869 C = 9500.185841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.135 4.135 3 C -0.056 4.056 4 C -0.121 4.121 5 C -0.060 4.060 6 C -0.189 4.189 7 C 0.550 3.450 8 O -0.578 6.578 9 N -0.690 5.690 10 C 0.151 3.849 11 H 0.069 0.931 12 C 0.131 3.869 13 N -0.621 5.621 14 C -0.251 4.251 15 H 0.081 0.919 16 C -0.058 4.058 17 N -0.945 5.945 18 Si 0.979 3.021 19 H -0.290 1.290 20 H -0.288 1.288 21 H -0.268 1.268 22 C 0.160 3.840 23 C 0.093 3.907 24 H 0.100 0.900 25 O -0.570 6.570 26 C 0.114 3.886 27 F -0.142 7.142 28 H 0.082 0.918 29 H 0.103 0.897 30 H 0.054 0.946 31 H 0.177 0.823 32 H 0.178 0.822 33 H 0.160 0.840 34 H 0.417 0.583 35 H 0.030 0.970 36 H 0.047 0.953 37 H 0.250 0.750 38 H 0.022 0.978 39 H 0.029 0.971 40 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.904 23.728 -3.667 27.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.136 4.136 3 C -0.074 4.074 4 C -0.139 4.139 5 C -0.079 4.079 6 C -0.193 4.193 7 C 0.339 3.661 8 O -0.459 6.459 9 N -0.343 5.343 10 C 0.045 3.955 11 H 0.087 0.913 12 C 0.005 3.995 13 N -0.349 5.349 14 C -0.380 4.380 15 H 0.098 0.902 16 C -0.252 4.252 17 N -0.593 5.593 18 Si 0.807 3.193 19 H -0.217 1.217 20 H -0.214 1.214 21 H -0.192 1.192 22 C 0.034 3.966 23 C 0.033 3.967 24 H 0.118 0.882 25 O -0.378 6.378 26 C 0.094 3.906 27 F -0.121 7.121 28 H 0.101 0.899 29 H 0.122 0.878 30 H 0.074 0.926 31 H 0.195 0.805 32 H 0.196 0.804 33 H 0.178 0.822 34 H 0.256 0.744 35 H 0.048 0.952 36 H 0.064 0.936 37 H 0.060 0.940 38 H 0.040 0.960 39 H 0.047 0.953 40 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -13.807 22.713 -3.542 26.816 hybrid contribution 1.151 -1.587 0.378 1.997 sum -12.656 21.126 -3.164 24.830 Atomic orbital electron populations 1.20813 0.88378 1.04192 1.03702 1.20292 0.98544 0.91103 1.03690 1.21652 0.94673 0.97408 0.93631 1.21648 0.94243 0.98937 0.99024 1.21576 1.01526 0.89978 0.94792 1.20003 0.92439 0.94376 1.12436 1.18648 0.82557 0.89150 0.75717 1.90820 1.69370 1.34369 1.51314 1.45484 1.05326 1.09209 1.74254 1.21776 0.91473 0.86365 0.95914 0.91292 1.21925 0.89099 0.94063 0.94445 1.44499 1.25778 1.40631 1.24023 1.19431 1.11366 1.08089 0.99078 0.90164 1.25660 0.98005 1.01756 0.99784 1.70119 1.19599 1.40242 1.29326 0.85061 0.76824 0.79083 0.78366 1.21735 1.21413 1.19243 1.21662 0.93655 0.94185 0.87107 1.23155 0.93716 0.98652 0.81174 0.88228 1.86439 1.36753 1.95763 1.18833 1.18126 0.89088 0.81979 1.01402 1.91504 1.80033 1.47240 1.93275 0.89916 0.87793 0.92649 0.80527 0.80422 0.82224 0.74375 0.95176 0.93554 0.94021 0.95978 0.95262 0.75235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.49 9.83 71.24 0.70 -0.79 16 2 C -0.14 -2.35 5.88 -19.85 -0.12 -2.47 16 3 C -0.06 -0.55 9.69 22.31 0.22 -0.34 16 4 C -0.12 -1.12 10.03 22.23 0.22 -0.89 16 5 C -0.06 -0.92 9.54 22.52 0.21 -0.71 16 6 C -0.19 -4.91 5.88 -20.05 -0.12 -5.03 16 7 C 0.55 19.09 7.77 86.74 0.67 19.77 16 8 O -0.58 -26.31 14.98 -3.91 -0.06 -26.37 16 9 N -0.69 -20.93 5.15 -438.98 -2.26 -23.19 16 10 C 0.15 5.93 3.15 46.38 0.15 6.08 16 11 H 0.07 3.27 7.54 -2.39 -0.02 3.25 16 12 C 0.13 5.83 6.93 86.86 0.60 6.43 16 13 N -0.62 -32.93 3.39 -691.97 -2.35 -35.27 16 14 C -0.25 -14.50 10.27 84.03 0.86 -13.64 16 15 H 0.08 4.50 7.84 -2.91 -0.02 4.48 16 16 C -0.06 -3.36 5.48 84.86 0.46 -2.89 16 17 N -0.94 -56.29 10.36 21.65 0.22 -56.06 16 18 Si 0.98 46.43 29.56 68.60 2.03 48.45 16 19 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 20 H -0.29 -13.42 7.11 99.48 0.71 -12.72 16 21 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 22 C 0.16 7.75 5.16 86.73 0.45 8.19 16 23 C 0.09 3.36 3.97 31.78 0.13 3.48 16 24 H 0.10 2.81 8.00 -2.39 -0.02 2.80 16 25 O -0.57 -19.26 13.40 -148.98 -2.00 -21.25 16 26 C 0.11 3.08 7.22 22.67 0.16 3.24 16 27 F -0.14 -4.90 14.76 44.97 0.66 -4.24 16 28 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.10 0.70 8.08 -2.39 -0.02 0.68 16 30 H 0.05 0.91 7.64 -2.38 -0.02 0.89 16 31 H 0.18 0.34 8.06 -2.91 -0.02 0.32 16 32 H 0.18 0.25 8.06 -2.91 -0.02 0.23 16 33 H 0.16 1.55 6.40 -2.92 -0.02 1.53 16 34 H 0.42 8.78 6.60 -92.70 -0.61 8.16 16 35 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 38 H 0.02 1.23 7.21 -2.39 -0.02 1.22 16 39 H 0.03 1.51 7.61 -2.39 -0.02 1.49 16 40 H 0.40 9.83 9.12 -74.06 -0.68 9.15 16 Total: -1.00 -83.27 338.60 0.67 -82.61 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: -0.19 Total: 14.89 kcal Atomic # 6 Polarization: 15.82 SS G_CDS: 4.61 Total: 20.43 kcal Atomic # 7 Polarization: -110.14 SS G_CDS: -4.38 Total: -114.52 kcal Atomic # 8 Polarization: -45.56 SS G_CDS: -2.05 Total: -47.62 kcal Atomic # 9 Polarization: -4.90 SS G_CDS: 0.66 Total: -4.24 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 2.03 Total: 48.45 kcal Total: -83.27 0.67 -82.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077040369.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.611 kcal (2) G-P(sol) polarization free energy of solvation -83.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds