Wall clock time and date at job start Fri Apr 10 2020 14:29:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.32214 * 120.51012 * 2 1 4 4 C 1.31904 * 121.14397 * 179.75967 * 3 2 1 5 5 N 1.31762 * 122.19611 * 0.53600 * 4 3 2 6 6 C 1.32748 * 120.86571 * 359.73491 * 5 4 3 7 7 O 1.35277 * 120.61347 * 179.97438 * 6 5 4 8 8 C 1.39762 * 120.50825 * 180.28311 * 2 1 3 9 9 C 1.47535 * 120.98257 * 359.97438 * 8 2 1 10 10 O 1.21586 * 120.00258 * 89.99880 * 9 8 2 11 11 N 1.34785 * 120.00028 * 270.00199 * 9 8 2 12 12 C 1.46503 * 119.99946 * 179.97438 * 11 9 8 13 13 H 1.08998 * 110.88515 * 34.30119 * 12 11 9 14 14 C 1.54908 * 111.00348 * 270.42045 * 12 11 9 15 15 N 1.47473 * 104.80610 * 204.95319 * 14 12 11 16 16 C 1.36940 * 125.62457 * 204.14278 * 15 14 12 17 17 H 1.07998 * 120.00154 * 359.94360 * 16 15 14 18 18 C 1.38811 * 119.99652 * 179.97438 * 16 15 14 19 19 N 1.31613 * 120.00582 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99566 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47519 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.47176 * 119.99913 * 20 18 16 23 23 H 1.48497 * 109.47052 * 239.99644 * 20 18 16 24 24 C 1.47018 * 108.72653 * 24.06629 * 15 14 12 25 25 C 1.54328 * 107.27091 * 358.97826 * 24 15 14 26 26 H 1.08999 * 110.71841 * 96.16581 * 25 24 15 27 27 O 1.42896 * 110.87249 * 219.36889 * 25 24 15 28 28 H 1.09002 * 109.47152 * 269.71749 * 1 2 3 29 29 H 1.09001 * 109.46980 * 149.71850 * 1 2 3 30 30 H 1.09004 * 109.47113 * 29.71830 * 1 2 3 31 31 H 1.08001 * 118.90623 * 180.24996 * 4 3 2 32 32 H 0.96709 * 113.99940 * 270.02139 * 7 6 5 33 33 H 0.96998 * 119.99615 * 359.97438 * 11 9 8 34 34 H 1.09003 * 110.36884 * 323.75399 * 14 12 11 35 35 H 1.08995 * 110.36988 * 86.08049 * 14 12 11 36 36 H 0.96989 * 120.00541 * 180.02562 * 19 18 16 37 37 H 1.08994 * 109.88286 * 239.55700 * 24 15 14 38 38 H 1.08999 * 109.88036 * 118.39307 * 24 15 14 39 39 H 0.96694 * 114.00065 * 293.61140 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1783 1.1391 0.0000 4 6 3.4972 1.1537 0.0047 5 7 4.2116 0.0465 -0.0008 6 6 3.6234 -1.1435 -0.0061 7 8 4.3618 -2.2769 -0.0123 8 6 2.2165 -1.2041 -0.0059 9 6 1.5124 -2.5006 -0.0118 10 8 1.2217 -3.0298 -1.0671 11 7 1.1911 -3.0982 1.1528 12 6 0.4914 -4.3853 1.1470 13 1 0.8095 -4.9968 0.3026 14 6 -1.0443 -4.1824 1.1382 15 7 -1.5909 -5.4153 1.7348 16 6 -2.8513 -5.9099 1.5298 17 1 -3.5390 -5.3846 0.8838 18 6 -3.2450 -7.0862 2.1528 19 7 -2.4070 -7.7264 2.9402 20 14 -4.9641 -7.7612 1.8725 21 1 -5.7047 -6.8627 0.9509 22 1 -4.8720 -9.1169 1.2734 23 1 -5.6821 -7.8412 3.1699 24 6 -0.5584 -6.0264 2.5845 25 6 0.6995 -5.1375 2.4880 26 1 0.7409 -4.4360 3.3212 27 8 1.8843 -5.9351 2.4417 28 1 -0.3633 -0.0051 1.0277 29 1 -0.3633 -0.8875 -0.5182 30 1 -0.3633 0.8925 -0.5095 31 1 4.0088 2.1048 0.0087 32 1 4.5761 -2.6020 -0.8975 33 1 1.4232 -2.6761 1.9947 34 1 -1.3161 -3.3164 1.7419 35 1 -1.4053 -4.0621 0.1168 36 1 -2.6820 -8.5485 3.3752 37 1 -0.3310 -7.0307 2.2273 38 1 -0.9048 -6.0676 3.6172 39 1 2.0600 -6.4260 3.2560 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077546388.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:29:55 Heat of formation + Delta-G solvation = -40.065308 kcal Electronic energy + Delta-G solvation = -25637.162915 eV Core-core repulsion = 21774.621146 eV Total energy + Delta-G solvation = -3862.541769 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.132 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.67541 -39.57955 -38.07522 -37.82953 -35.12032 -34.50843 -34.13793 -32.35287 -31.59592 -29.13206 -28.36299 -27.13546 -25.46148 -24.28822 -23.13885 -21.29586 -20.57359 -20.26380 -19.21216 -18.35692 -17.98230 -17.13800 -16.73313 -16.57712 -15.94181 -15.37431 -14.89768 -14.57146 -14.35167 -14.25790 -14.03283 -13.64126 -13.29389 -13.14045 -12.91529 -12.74291 -12.49343 -12.35127 -12.13309 -11.60206 -11.55229 -11.31829 -10.94375 -10.86339 -10.68641 -10.23233 -10.10351 -9.96057 -9.89760 -9.74334 -9.69949 -9.38351 -8.97354 -8.69166 -6.96752 -5.80622 -3.15581 0.26184 0.54910 2.39938 2.91354 3.02714 3.32722 3.36322 3.42277 3.44488 3.62818 3.90083 4.35805 4.47194 4.57005 4.62070 4.83708 4.98218 5.12107 5.26851 5.38240 5.39371 5.52283 5.58329 5.61176 5.74691 5.89969 5.99205 6.04735 6.37396 6.46440 6.51911 6.75744 6.98828 7.27486 7.41393 7.48072 7.62703 7.69275 8.07523 8.10034 8.15154 9.10367 9.70476 10.32811 11.31145 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.024121 B = 0.003502 C = 0.003201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.519118 B = 7993.253807 C = 8745.010495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.229 3.771 3 N -0.526 5.526 4 C 0.333 3.667 5 N -0.543 5.543 6 C 0.400 3.600 7 O -0.468 6.468 8 C -0.249 4.249 9 C 0.578 3.422 10 O -0.525 6.525 11 N -0.698 5.698 12 C 0.137 3.863 13 H 0.106 0.894 14 C 0.131 3.869 15 N -0.599 5.599 16 C -0.230 4.230 17 H 0.082 0.918 18 C -0.007 4.007 19 N -0.923 5.923 20 Si 0.915 3.085 21 H -0.279 1.279 22 H -0.290 1.290 23 H -0.290 1.290 24 C 0.154 3.846 25 C 0.069 3.931 26 H 0.057 0.943 27 O -0.562 6.562 28 H 0.096 0.904 29 H 0.089 0.911 30 H 0.092 0.908 31 H 0.206 0.794 32 H 0.415 0.585 33 H 0.399 0.601 34 H 0.025 0.975 35 H 0.052 0.948 36 H 0.253 0.747 37 H 0.062 0.938 38 H 0.050 0.950 39 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.376 15.330 -2.448 19.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.083 3.917 3 N -0.243 5.243 4 C 0.046 3.954 5 N -0.269 5.269 6 C 0.212 3.788 7 O -0.276 6.276 8 C -0.258 4.258 9 C 0.361 3.639 10 O -0.401 6.401 11 N -0.347 5.347 12 C 0.032 3.968 13 H 0.124 0.876 14 C 0.003 3.997 15 N -0.327 5.327 16 C -0.358 4.358 17 H 0.100 0.900 18 C -0.203 4.203 19 N -0.570 5.570 20 Si 0.745 3.255 21 H -0.204 1.204 22 H -0.216 1.216 23 H -0.217 1.217 24 C 0.028 3.972 25 C 0.009 3.991 26 H 0.075 0.925 27 O -0.367 6.367 28 H 0.114 0.886 29 H 0.107 0.893 30 H 0.111 0.889 31 H 0.222 0.778 32 H 0.277 0.723 33 H 0.233 0.767 34 H 0.042 0.958 35 H 0.070 0.930 36 H 0.063 0.937 37 H 0.080 0.920 38 H 0.068 0.932 39 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 11.513 15.798 -3.162 19.802 hybrid contribution -0.911 -1.297 0.517 1.667 sum 10.602 14.501 -2.645 18.157 Atomic orbital electron populations 1.20982 0.86650 1.05223 1.04689 1.21868 0.97890 0.85896 0.86004 1.68315 1.10156 1.29401 1.16394 1.24978 0.86301 0.96114 0.88004 1.68076 1.42640 0.98668 1.17483 1.19408 0.85543 0.85967 0.87922 1.84642 1.72450 1.35869 1.34666 1.21861 0.95078 0.97060 1.11774 1.17485 0.78486 0.83299 0.84605 1.90857 1.53964 1.64534 1.30749 1.45903 1.58286 1.22678 1.07844 1.22365 0.93053 0.82382 0.98976 0.87578 1.21853 0.89361 0.90774 0.97711 1.44257 1.11647 1.23440 1.53383 1.19132 0.87494 1.04941 1.24199 0.90025 1.24820 0.98549 0.97545 0.99389 1.69921 1.34236 1.18645 1.34233 0.85995 0.83331 0.78766 0.77364 1.20386 1.21642 1.21697 1.21829 0.84250 0.94950 0.96170 1.23442 0.87211 0.93038 0.95402 0.92499 1.86467 1.43626 1.64369 1.42230 0.88553 0.89250 0.88896 0.77774 0.72313 0.76731 0.95781 0.93012 0.93652 0.92008 0.93213 0.77581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.14 9.85 36.01 0.35 -0.78 16 2 C 0.23 2.59 6.86 -81.86 -0.56 2.03 16 3 N -0.53 -5.58 10.36 -10.52 -0.11 -5.69 16 4 C 0.33 3.12 12.27 -92.09 -1.13 1.99 16 5 N -0.54 -6.12 10.45 -14.32 -0.15 -6.27 16 6 C 0.40 4.83 7.85 -16.18 -0.13 4.71 16 7 O -0.47 -5.32 13.10 -17.52 -0.23 -5.55 16 8 C -0.25 -3.13 5.67 -104.56 -0.59 -3.72 16 9 C 0.58 8.65 5.51 -12.47 -0.07 8.58 16 10 O -0.53 -9.68 16.80 5.29 0.09 -9.59 16 11 N -0.70 -10.17 5.21 -52.76 -0.27 -10.44 16 12 C 0.14 2.48 3.09 -65.78 -0.20 2.28 16 13 H 0.11 2.21 7.63 -51.93 -0.40 1.82 16 14 C 0.13 2.65 6.93 -2.50 -0.02 2.63 16 15 N -0.60 -14.87 3.40 -170.04 -0.58 -15.45 16 16 C -0.23 -6.26 10.28 -15.06 -0.15 -6.42 16 17 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 18 C -0.01 -0.19 5.49 -17.43 -0.10 -0.28 16 19 N -0.92 -26.29 10.31 55.49 0.57 -25.71 16 20 Si 0.92 21.70 29.55 -169.99 -5.02 16.68 16 21 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 22 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 23 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 24 C 0.15 3.55 5.15 -3.06 -0.02 3.53 16 25 C 0.07 1.24 3.96 -24.89 -0.10 1.14 16 26 H 0.06 0.90 8.00 -51.93 -0.42 0.48 16 27 O -0.56 -9.55 13.40 -35.23 -0.47 -10.02 16 28 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 29 H 0.09 0.99 7.18 -51.93 -0.37 0.61 16 30 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.21 1.08 8.06 -52.49 -0.42 0.66 16 32 H 0.42 2.99 9.06 45.56 0.41 3.40 16 33 H 0.40 4.92 8.52 -40.82 -0.35 4.57 16 34 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 37 H 0.06 1.62 7.30 -51.93 -0.38 1.24 16 38 H 0.05 1.24 7.51 -51.93 -0.39 0.85 16 39 H 0.38 4.86 9.12 45.56 0.42 5.28 16 LS Contribution 337.89 15.07 5.09 5.09 Total: -1.00 -34.65 337.89 -6.93 -41.57 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: -3.13 Total: 9.70 kcal Atomic # 6 Polarization: 18.40 SS G_CDS: -2.71 Total: 15.69 kcal Atomic # 7 Polarization: -63.03 SS G_CDS: -0.54 Total: -63.57 kcal Atomic # 8 Polarization: -24.55 SS G_CDS: -0.61 Total: -25.16 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -34.65 -6.93 -41.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077546388.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.509 kcal (2) G-P(sol) polarization free energy of solvation -34.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds