Wall clock time and date at job start Fri Apr 10 2020 14:29:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.32214 * 120.51012 * 2 1 4 4 C 1.31904 * 121.14397 * 179.75967 * 3 2 1 5 5 N 1.31762 * 122.19611 * 0.53600 * 4 3 2 6 6 C 1.32748 * 120.86571 * 359.73491 * 5 4 3 7 7 O 1.35277 * 120.61347 * 179.97438 * 6 5 4 8 8 C 1.39762 * 120.50825 * 180.28311 * 2 1 3 9 9 C 1.47535 * 120.98257 * 359.97438 * 8 2 1 10 10 O 1.21586 * 120.00258 * 89.99880 * 9 8 2 11 11 N 1.34785 * 120.00028 * 270.00199 * 9 8 2 12 12 C 1.46503 * 119.99946 * 179.97438 * 11 9 8 13 13 H 1.08998 * 110.88515 * 34.30119 * 12 11 9 14 14 C 1.54908 * 111.00348 * 270.42045 * 12 11 9 15 15 N 1.47473 * 104.80610 * 204.95319 * 14 12 11 16 16 C 1.36940 * 125.62457 * 204.14278 * 15 14 12 17 17 H 1.07998 * 120.00154 * 359.94360 * 16 15 14 18 18 C 1.38811 * 119.99652 * 179.97438 * 16 15 14 19 19 N 1.31613 * 120.00582 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99566 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47519 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.47176 * 119.99913 * 20 18 16 23 23 H 1.48497 * 109.47052 * 239.99644 * 20 18 16 24 24 C 1.47018 * 108.72653 * 24.06629 * 15 14 12 25 25 C 1.54328 * 107.27091 * 358.97826 * 24 15 14 26 26 H 1.08999 * 110.71841 * 96.16581 * 25 24 15 27 27 O 1.42896 * 110.87249 * 219.36889 * 25 24 15 28 28 H 1.09002 * 109.47152 * 269.71749 * 1 2 3 29 29 H 1.09001 * 109.46980 * 149.71850 * 1 2 3 30 30 H 1.09004 * 109.47113 * 29.71830 * 1 2 3 31 31 H 1.08001 * 118.90623 * 180.24996 * 4 3 2 32 32 H 0.96709 * 113.99940 * 270.02139 * 7 6 5 33 33 H 0.96998 * 119.99615 * 359.97438 * 11 9 8 34 34 H 1.09003 * 110.36884 * 323.75399 * 14 12 11 35 35 H 1.08995 * 110.36988 * 86.08049 * 14 12 11 36 36 H 0.96989 * 120.00541 * 180.02562 * 19 18 16 37 37 H 1.08994 * 109.88286 * 239.55700 * 24 15 14 38 38 H 1.08999 * 109.88036 * 118.39307 * 24 15 14 39 39 H 0.96694 * 114.00065 * 293.61140 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1783 1.1391 0.0000 4 6 3.4972 1.1537 0.0047 5 7 4.2116 0.0465 -0.0008 6 6 3.6234 -1.1435 -0.0061 7 8 4.3618 -2.2769 -0.0123 8 6 2.2165 -1.2041 -0.0059 9 6 1.5124 -2.5006 -0.0118 10 8 1.2217 -3.0298 -1.0671 11 7 1.1911 -3.0982 1.1528 12 6 0.4914 -4.3853 1.1470 13 1 0.8095 -4.9968 0.3026 14 6 -1.0443 -4.1824 1.1382 15 7 -1.5909 -5.4153 1.7348 16 6 -2.8513 -5.9099 1.5298 17 1 -3.5390 -5.3846 0.8838 18 6 -3.2450 -7.0862 2.1528 19 7 -2.4070 -7.7264 2.9402 20 14 -4.9641 -7.7612 1.8725 21 1 -5.7047 -6.8627 0.9509 22 1 -4.8720 -9.1169 1.2734 23 1 -5.6821 -7.8412 3.1699 24 6 -0.5584 -6.0264 2.5845 25 6 0.6995 -5.1375 2.4880 26 1 0.7409 -4.4360 3.3212 27 8 1.8843 -5.9351 2.4417 28 1 -0.3633 -0.0051 1.0277 29 1 -0.3633 -0.8875 -0.5182 30 1 -0.3633 0.8925 -0.5095 31 1 4.0088 2.1048 0.0087 32 1 4.5761 -2.6020 -0.8975 33 1 1.4232 -2.6761 1.9947 34 1 -1.3161 -3.3164 1.7419 35 1 -1.4053 -4.0621 0.1168 36 1 -2.6820 -8.5485 3.3752 37 1 -0.3310 -7.0307 2.2273 38 1 -0.9048 -6.0676 3.6172 39 1 2.0600 -6.4260 3.2560 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001077546388.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:29:55 Heat of formation + Delta-G solvation = -71.919939 kcal Electronic energy + Delta-G solvation = -25638.544236 eV Core-core repulsion = 21774.621146 eV Total energy + Delta-G solvation = -3863.923090 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.132 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.56134 -40.87322 -39.38298 -38.86761 -36.69055 -35.66906 -35.32084 -33.74892 -32.97069 -30.36619 -29.74282 -28.73062 -26.73281 -25.83344 -23.97173 -22.70428 -22.16516 -21.77043 -20.03816 -19.35990 -19.20782 -18.78746 -18.24300 -17.53709 -17.29269 -16.66473 -16.20485 -15.91431 -15.79204 -15.47153 -15.29066 -14.87468 -14.48619 -14.44351 -14.22383 -13.88512 -13.79603 -13.73345 -13.19568 -13.16624 -13.13139 -12.77676 -12.74746 -12.49855 -12.05394 -11.88767 -11.58351 -11.49367 -11.29407 -10.90451 -10.78073 -10.68558 -10.55513 -10.29663 -8.96995 -7.88494 -5.25621 -0.57800 -0.29122 1.23131 1.46923 1.48249 1.58245 1.83867 2.11578 2.46928 2.48657 2.88229 3.09926 3.10625 3.31246 3.39413 3.51193 3.74065 3.88279 4.02053 4.06294 4.15954 4.21301 4.42998 4.51739 4.56257 4.62210 4.81668 4.89915 4.93047 5.16584 5.30794 5.38217 5.44459 5.63736 5.66581 6.13279 6.26602 6.29829 6.83006 6.84348 6.95197 7.05060 7.69499 8.31373 9.21458 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.024121 B = 0.003502 C = 0.003201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.519118 B = 7993.253807 C = 8745.010495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.233 3.767 3 N -0.531 5.531 4 C 0.341 3.659 5 N -0.555 5.555 6 C 0.401 3.599 7 O -0.479 6.479 8 C -0.266 4.266 9 C 0.587 3.413 10 O -0.564 6.564 11 N -0.685 5.685 12 C 0.153 3.847 13 H 0.076 0.924 14 C 0.132 3.868 15 N -0.621 5.621 16 C -0.245 4.245 17 H 0.084 0.916 18 C -0.061 4.061 19 N -0.948 5.948 20 Si 0.979 3.021 21 H -0.266 1.266 22 H -0.294 1.294 23 H -0.289 1.289 24 C 0.162 3.838 25 C 0.090 3.910 26 H 0.092 0.908 27 O -0.569 6.569 28 H 0.111 0.889 29 H 0.071 0.929 30 H 0.108 0.892 31 H 0.246 0.754 32 H 0.430 0.570 33 H 0.414 0.586 34 H 0.048 0.952 35 H 0.040 0.960 36 H 0.249 0.751 37 H 0.021 0.979 38 H 0.027 0.973 39 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.987 17.632 -2.136 21.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.087 3.913 3 N -0.248 5.248 4 C 0.055 3.945 5 N -0.280 5.280 6 C 0.212 3.788 7 O -0.291 6.291 8 C -0.275 4.275 9 C 0.372 3.628 10 O -0.442 6.442 11 N -0.335 5.335 12 C 0.047 3.953 13 H 0.094 0.906 14 C 0.005 3.995 15 N -0.349 5.349 16 C -0.374 4.374 17 H 0.102 0.898 18 C -0.255 4.255 19 N -0.597 5.597 20 Si 0.808 3.192 21 H -0.190 1.190 22 H -0.221 1.221 23 H -0.215 1.215 24 C 0.036 3.964 25 C 0.030 3.970 26 H 0.110 0.890 27 O -0.376 6.376 28 H 0.130 0.870 29 H 0.090 0.910 30 H 0.126 0.874 31 H 0.262 0.738 32 H 0.295 0.705 33 H 0.251 0.749 34 H 0.065 0.935 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.039 0.961 38 H 0.045 0.955 39 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 12.161 18.141 -2.842 22.024 hybrid contribution -1.031 -1.951 0.386 2.240 sum 11.130 16.190 -2.455 19.800 Atomic orbital electron populations 1.21028 0.85770 1.05089 1.05580 1.22094 0.98577 0.85666 0.84991 1.68434 1.10734 1.28673 1.16927 1.25852 0.86063 0.97017 0.85535 1.68203 1.42769 0.98717 1.18314 1.19503 0.85387 0.86477 0.87389 1.84590 1.72352 1.35941 1.36173 1.21605 0.95269 0.95966 1.14649 1.17757 0.77567 0.83709 0.83761 1.90838 1.55465 1.65800 1.32141 1.45661 1.57737 1.21372 1.08764 1.21849 0.91843 0.83645 0.98000 0.90561 1.21949 0.90669 0.89781 0.97052 1.44521 1.11480 1.24910 1.54018 1.19492 0.88773 1.05203 1.23901 0.89789 1.25635 1.02188 0.98036 0.99606 1.70122 1.35755 1.18728 1.35099 0.85000 0.79241 0.77737 0.77270 1.19044 1.22112 1.21544 1.21609 0.86209 0.94321 0.94249 1.23152 0.85136 0.92436 0.96285 0.89026 1.86435 1.42502 1.64666 1.44014 0.87044 0.90984 0.87385 0.73810 0.70541 0.74943 0.93478 0.94162 0.94203 0.96055 0.95526 0.75367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.05 9.85 71.24 0.70 -1.35 16 2 C 0.23 4.79 6.86 42.87 0.29 5.08 16 3 N -0.53 -9.79 10.36 -187.21 -1.94 -11.73 16 4 C 0.34 5.32 12.27 180.86 2.22 7.54 16 5 N -0.55 -11.15 10.45 -312.04 -3.26 -14.41 16 6 C 0.40 9.02 7.85 85.18 0.67 9.68 16 7 O -0.48 -10.28 13.10 -85.62 -1.12 -11.40 16 8 C -0.27 -6.30 5.67 -19.83 -0.11 -6.41 16 9 C 0.59 17.14 5.51 86.69 0.48 17.62 16 10 O -0.56 -20.97 16.80 -3.99 -0.07 -21.04 16 11 N -0.69 -19.05 5.21 -439.11 -2.29 -21.34 16 12 C 0.15 5.48 3.09 46.38 0.14 5.62 16 13 H 0.08 3.25 7.63 -2.39 -0.02 3.23 16 14 C 0.13 5.33 6.93 86.85 0.60 5.94 16 15 N -0.62 -31.32 3.40 -691.88 -2.35 -33.67 16 16 C -0.25 -13.56 10.28 84.03 0.86 -12.69 16 17 H 0.08 4.47 7.83 -2.91 -0.02 4.44 16 18 C -0.06 -3.43 5.49 84.86 0.47 -2.96 16 19 N -0.95 -55.47 10.31 21.65 0.22 -55.25 16 20 Si 0.98 45.11 29.55 68.60 2.03 47.14 16 21 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 22 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 23 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 24 C 0.16 7.64 5.15 86.73 0.45 8.09 16 25 C 0.09 3.15 3.96 31.78 0.13 3.27 16 26 H 0.09 2.63 8.00 -2.39 -0.02 2.61 16 27 O -0.57 -18.70 13.40 -148.98 -2.00 -20.69 16 28 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.07 1.53 7.18 -2.39 -0.02 1.51 16 30 H 0.11 1.53 8.14 -2.38 -0.02 1.52 16 31 H 0.25 1.54 8.06 -2.91 -0.02 1.52 16 32 H 0.43 5.82 9.06 -74.05 -0.67 5.15 16 33 H 0.41 9.19 8.52 -92.71 -0.79 8.40 16 34 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.25 14.12 8.31 -92.72 -0.77 13.35 16 37 H 0.02 1.16 7.30 -2.39 -0.02 1.14 16 38 H 0.03 1.36 7.51 -2.39 -0.02 1.34 16 39 H 0.40 9.67 9.12 -74.06 -0.68 8.99 16 Total: -1.00 -76.16 337.89 -4.88 -81.03 By element: Atomic # 1 Polarization: 22.92 SS G_CDS: -1.00 Total: 21.92 kcal Atomic # 6 Polarization: 32.53 SS G_CDS: 6.90 Total: 39.43 kcal Atomic # 7 Polarization: -126.77 SS G_CDS: -9.61 Total: -136.39 kcal Atomic # 8 Polarization: -49.95 SS G_CDS: -3.18 Total: -53.13 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -76.16 -4.88 -81.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077546388.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.113 kcal (2) G-P(sol) polarization free energy of solvation -76.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds