Wall clock time and date at job start Fri Apr 10 2020 14:28:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37859 * 119.94024 * 2 1 4 4 C 1.39635 * 119.87930 * 180.02562 * 3 2 1 5 5 C 1.47726 * 120.11962 * 180.02562 * 4 3 2 6 6 O 1.21569 * 119.99818 * 359.97438 * 5 4 3 7 7 N 1.34776 * 119.99840 * 179.97438 * 5 4 3 8 8 C 1.46501 * 119.99847 * 179.97438 * 7 5 4 9 9 H 1.09005 * 110.63761 * 34.30086 * 8 7 5 10 10 C 1.54320 * 110.72378 * 271.16162 * 8 7 5 11 11 N 1.47018 * 107.27307 * 219.44495 * 10 8 7 12 12 C 1.36933 * 125.65135 * 178.97301 * 11 10 8 13 13 H 1.07999 * 119.99978 * 359.97438 * 12 11 10 14 14 C 1.38812 * 120.00247 * 180.02562 * 12 11 10 15 15 N 1.31618 * 119.99991 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00008 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47285 * 89.99921 * 16 14 12 18 18 H 1.48507 * 109.46946 * 209.99729 * 16 14 12 19 19 H 1.48494 * 109.47100 * 329.99421 * 16 14 12 20 20 C 1.47422 * 108.70118 * 358.93636 * 11 10 8 21 21 C 1.55123 * 104.94314 * 24.00556 * 20 11 10 22 22 H 1.09008 * 111.16116 * 205.12709 * 21 20 11 23 23 O 1.42902 * 110.93505 * 81.21498 * 21 20 11 24 24 C 1.39677 * 119.76225 * 359.97438 * 4 3 2 25 25 C 1.37820 * 119.87863 * 359.97438 * 24 4 3 26 26 C 1.38641 * 119.94102 * 180.27135 * 2 1 3 27 27 F 1.35102 * 119.87732 * 0.02562 * 26 2 1 28 28 H 1.08998 * 109.47234 * 90.00098 * 1 2 3 29 29 H 1.09001 * 109.47196 * 210.00122 * 1 2 3 30 30 H 1.09007 * 109.46810 * 330.00146 * 1 2 3 31 31 H 1.07993 * 120.05962 * 0.02562 * 3 2 1 32 32 H 0.96995 * 120.00365 * 0.02562 * 7 5 4 33 33 H 1.09006 * 109.87684 * 338.86156 * 10 8 7 34 34 H 1.08998 * 109.88472 * 100.01896 * 10 8 7 35 35 H 0.97001 * 119.99953 * 180.02562 * 15 14 12 36 36 H 1.09004 * 110.36725 * 142.96953 * 20 11 10 37 37 H 1.09002 * 110.36838 * 265.18058 * 20 11 10 38 38 H 0.96701 * 113.99948 * 67.96571 * 23 21 20 39 39 H 1.07999 * 120.05941 * 180.02562 * 24 4 3 40 40 H 1.08002 * 119.93557 * 179.97438 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1950 1.1946 0.0000 4 6 3.5914 1.1931 -0.0005 5 6 4.3340 2.4701 0.0000 6 8 3.7295 3.5248 0.0005 7 7 5.6818 2.4658 0.0000 8 6 6.4183 3.7323 0.0000 9 1 5.8830 4.4880 0.5749 10 6 6.6675 4.2190 -1.4430 11 7 8.0254 4.7810 -1.4858 12 6 8.6384 5.3034 -2.5932 13 1 8.1176 5.3250 -3.5390 14 6 9.9297 5.8043 -2.5003 15 7 10.5646 5.7776 -1.3477 16 14 10.7657 6.5176 -4.0109 17 1 10.4742 7.9711 -4.0980 18 1 12.2329 6.3123 -3.9079 19 1 10.2548 5.8364 -5.2274 20 6 8.6173 4.6898 -0.1387 21 6 7.8527 3.5331 0.5567 22 1 7.8703 3.6455 1.6408 23 8 8.3819 2.2642 0.1668 24 6 4.2834 -0.0201 -0.0005 25 6 3.5856 -1.2086 0.0005 26 6 2.1989 -1.2014 -0.0057 27 9 1.5197 -2.3692 -0.0117 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3633 0.8901 0.5139 31 1 1.6551 2.1299 0.0004 32 1 6.1641 1.6243 -0.0007 33 1 6.5914 3.3805 -2.1354 34 1 5.9400 4.9868 -1.7062 35 1 11.4668 6.1280 -1.2827 36 1 9.6800 4.4568 -0.2063 37 1 8.4681 5.6226 0.4052 38 1 9.2767 2.0946 0.4917 39 1 5.3634 -0.0269 -0.0005 40 1 4.1198 -2.1473 0.0001 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083742089.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:28:40 Heat of formation + Delta-G solvation = -74.132316 kcal Electronic energy + Delta-G solvation = -24963.200533 eV Core-core repulsion = 21079.261546 eV Total energy + Delta-G solvation = -3883.938987 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.132 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.24003 -40.29248 -38.75991 -37.62352 -34.76867 -34.21103 -33.17557 -31.75185 -30.92222 -28.58647 -27.44597 -26.84475 -24.74037 -23.56038 -22.52737 -20.73325 -20.38297 -19.76080 -18.02381 -17.64501 -17.07735 -16.96080 -16.42076 -16.01695 -15.33569 -14.98008 -14.77993 -14.68076 -14.22100 -14.09018 -13.77477 -13.64465 -13.51227 -13.19852 -12.98088 -12.83145 -12.59111 -12.26991 -12.11791 -11.76262 -11.36359 -11.30604 -11.09838 -10.87658 -10.65802 -10.38443 -10.08526 -9.85972 -9.84145 -9.27831 -9.27065 -8.99291 -8.72480 -8.68281 -6.86871 -5.71136 -3.10922 0.47363 0.90822 2.67985 3.23315 3.38815 3.43951 3.45831 3.59780 3.87621 4.32590 4.41639 4.45302 4.52922 4.72879 4.87179 4.90617 5.19663 5.28093 5.30825 5.34373 5.41483 5.47372 5.64477 5.68834 5.72456 5.78909 5.89433 5.91975 5.98927 6.05739 6.24235 6.47357 6.51359 6.68364 6.90863 7.23428 7.54352 7.68512 7.74733 8.07755 8.29216 8.35711 9.16570 9.77469 10.40594 11.34067 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.027716 B = 0.002843 C = 0.002801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.010922 B = 9845.417367 C = 9995.706848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.129 4.129 3 C -0.034 4.034 4 C -0.134 4.134 5 C 0.554 3.446 6 O -0.539 6.539 7 N -0.701 5.701 8 C 0.142 3.858 9 H 0.102 0.898 10 C 0.131 3.869 11 N -0.596 5.596 12 C -0.216 4.216 13 H 0.078 0.922 14 C -0.013 4.013 15 N -0.927 5.927 16 Si 0.917 3.083 17 H -0.289 1.289 18 H -0.290 1.290 19 H -0.281 1.281 20 C 0.127 3.873 21 C 0.067 3.933 22 H 0.060 0.940 23 O -0.562 6.562 24 C -0.062 4.062 25 C -0.156 4.156 26 C 0.115 3.885 27 F -0.136 7.136 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.147 0.853 32 H 0.407 0.593 33 H 0.030 0.970 34 H 0.029 0.971 35 H 0.252 0.748 36 H 0.116 0.884 37 H 0.023 0.977 38 H 0.380 0.620 39 H 0.140 0.860 40 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.717 -14.339 6.741 20.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.130 4.130 3 C -0.053 4.053 4 C -0.137 4.137 5 C 0.340 3.660 6 O -0.418 6.418 7 N -0.352 5.352 8 C 0.037 3.963 9 H 0.120 0.880 10 C 0.004 3.996 11 N -0.323 5.323 12 C -0.344 4.344 13 H 0.096 0.904 14 C -0.207 4.207 15 N -0.577 5.577 16 Si 0.747 3.253 17 H -0.216 1.216 18 H -0.217 1.217 19 H -0.207 1.207 20 C 0.001 3.999 21 C 0.007 3.993 22 H 0.078 0.922 23 O -0.368 6.368 24 C -0.081 4.081 25 C -0.175 4.175 26 C 0.096 3.904 27 F -0.114 7.114 28 H 0.094 0.906 29 H 0.089 0.911 30 H 0.094 0.906 31 H 0.164 0.836 32 H 0.244 0.756 33 H 0.048 0.952 34 H 0.047 0.953 35 H 0.063 0.937 36 H 0.133 0.867 37 H 0.040 0.960 38 H 0.228 0.772 39 H 0.158 0.842 40 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -14.535 -13.567 6.375 20.880 hybrid contribution 1.186 -0.148 -0.516 1.301 sum -13.349 -13.715 5.859 20.016 Atomic orbital electron populations 1.20739 0.89653 1.03541 1.03088 1.19906 0.97400 0.91533 1.04152 1.21065 0.92613 0.97840 0.93807 1.20102 0.94310 0.93444 1.05846 1.18161 0.82482 0.88485 0.76857 1.90781 1.68455 1.32315 1.50244 1.45767 1.05343 1.10555 1.73536 1.22199 0.90118 0.85431 0.98562 0.87969 1.21597 0.88568 0.96278 0.93150 1.44278 1.10390 1.71053 1.06543 1.19102 0.96230 1.31312 0.87799 0.90390 1.24757 0.97020 1.01593 0.97375 1.69714 1.12970 1.52231 1.22745 0.86028 0.78621 0.78875 0.81734 1.21614 1.21657 1.20685 1.22638 1.00480 0.92302 0.84435 1.23635 0.93054 0.86191 0.96463 0.92218 1.86220 1.35239 1.35574 1.79813 1.21250 1.00499 0.90753 0.95561 1.21063 0.92048 0.99908 1.04454 1.17781 0.90021 0.80956 1.01648 1.91492 1.80172 1.46159 1.93580 0.90580 0.91100 0.90588 0.83560 0.75597 0.95229 0.95304 0.93717 0.86669 0.95954 0.77229 0.84232 0.84025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.86 9.82 36.00 0.35 -0.51 16 2 C -0.13 -1.29 5.88 -104.61 -0.62 -1.90 16 3 C -0.03 -0.39 9.24 -39.20 -0.36 -0.75 16 4 C -0.13 -1.66 5.87 -104.96 -0.62 -2.28 16 5 C 0.55 8.64 7.77 -12.38 -0.10 8.54 16 6 O -0.54 -10.17 16.03 5.31 0.09 -10.08 16 7 N -0.70 -10.77 5.03 -53.01 -0.27 -11.04 16 8 C 0.14 2.59 3.15 -66.10 -0.21 2.38 16 9 H 0.10 1.91 7.62 -51.93 -0.40 1.51 16 10 C 0.13 2.90 7.00 -3.07 -0.02 2.88 16 11 N -0.60 -15.24 3.40 -169.94 -0.58 -15.82 16 12 C -0.22 -6.04 10.27 -15.06 -0.15 -6.20 16 13 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 14 C -0.01 -0.35 5.49 -17.43 -0.10 -0.45 16 15 N -0.93 -26.27 10.09 55.49 0.56 -25.71 16 16 Si 0.92 22.00 29.55 -169.99 -5.02 16.97 16 17 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 18 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 20 C 0.13 2.93 5.62 -2.41 -0.01 2.91 16 21 C 0.07 1.18 4.31 -24.47 -0.11 1.08 16 22 H 0.06 0.91 8.14 -51.92 -0.42 0.49 16 23 O -0.56 -9.13 12.23 -35.23 -0.43 -9.56 16 24 C -0.06 -0.63 9.54 -39.20 -0.37 -1.00 16 25 C -0.16 -1.45 10.01 -39.57 -0.40 -1.84 16 26 C 0.12 1.17 7.25 -39.27 -0.28 0.88 16 27 F -0.14 -1.38 16.47 2.25 0.04 -1.34 16 28 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.50 7.64 -51.93 -0.40 0.10 16 30 H 0.08 0.50 8.08 -51.92 -0.42 0.08 16 31 H 0.15 1.64 7.65 -52.49 -0.40 1.24 16 32 H 0.41 5.52 5.61 -40.82 -0.23 5.29 16 33 H 0.03 0.67 8.03 -51.93 -0.42 0.26 16 34 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 36 H 0.12 2.93 5.87 -51.93 -0.30 2.62 16 37 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.38 4.91 9.12 45.56 0.42 5.33 16 39 H 0.14 1.20 6.40 -52.49 -0.34 0.87 16 40 H 0.14 1.00 8.06 -52.49 -0.42 0.57 16 LS Contribution 338.11 15.07 5.10 5.10 Total: -1.00 -32.27 338.11 -7.66 -39.93 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: -4.14 Total: 7.82 kcal Atomic # 6 Polarization: 6.74 SS G_CDS: -2.99 Total: 3.75 kcal Atomic # 7 Polarization: -52.29 SS G_CDS: -0.28 Total: -52.57 kcal Atomic # 8 Polarization: -19.30 SS G_CDS: -0.35 Total: -19.65 kcal Atomic # 9 Polarization: -1.38 SS G_CDS: 0.04 Total: -1.34 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.27 -7.66 -39.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083742089.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.204 kcal (2) G-P(sol) polarization free energy of solvation -32.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds