Wall clock time and date at job start Fri Apr 10 2020 14:28:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38335 * 119.91479 * 2 1 4 4 C 1.38547 * 120.27024 * 180.02562 * 3 2 1 5 5 F 1.35103 * 119.95562 * 180.02562 * 4 3 2 6 6 C 1.38212 * 120.08930 * 0.02562 * 4 3 2 7 7 C 1.39528 * 119.82635 * 359.97438 * 6 4 3 8 8 C 1.47851 * 120.13233 * 180.02562 * 7 6 4 9 9 O 1.21554 * 120.00229 * 180.02562 * 8 7 6 10 10 N 1.34780 * 119.99937 * 359.97438 * 8 7 6 11 11 C 1.46505 * 119.99778 * 180.02562 * 10 8 7 12 12 H 1.08996 * 110.77820 * 36.79003 * 11 10 8 13 13 C 1.54327 * 110.71733 * 273.54375 * 11 10 8 14 14 N 1.47022 * 107.27230 * 263.83086 * 13 11 10 15 15 C 1.36929 * 125.64600 * 181.02426 * 14 13 11 16 16 H 1.08004 * 120.00341 * 0.28040 * 15 14 13 17 17 C 1.38815 * 120.00031 * 179.97438 * 15 14 13 18 18 N 1.31617 * 119.99916 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99958 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47228 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.46793 * 120.00365 * 19 17 15 22 22 H 1.48500 * 109.47000 * 240.00457 * 19 17 15 23 23 C 1.47423 * 108.70234 * 1.29219 * 14 13 11 24 24 C 1.55132 * 104.72360 * 335.54986 * 23 14 13 25 25 H 1.09000 * 111.22509 * 279.17880 * 24 23 14 26 26 O 1.42895 * 110.90513 * 155.27806 * 24 23 14 27 27 C 1.37943 * 119.91145 * 180.30532 * 2 1 3 28 28 H 1.08997 * 109.47391 * 89.99751 * 1 2 3 29 29 H 1.09001 * 109.47135 * 210.00287 * 1 2 3 30 30 H 1.09005 * 109.46542 * 329.99621 * 1 2 3 31 31 H 1.08008 * 119.86548 * 0.04666 * 3 2 1 32 32 H 1.08005 * 120.08763 * 179.97438 * 6 4 3 33 33 H 0.97001 * 120.00029 * 0.02562 * 10 8 7 34 34 H 1.09004 * 109.87290 * 144.41696 * 13 11 10 35 35 H 1.08998 * 109.88021 * 23.25165 * 13 11 10 36 36 H 0.97000 * 120.00284 * 179.97438 * 18 17 15 37 37 H 1.08999 * 110.36884 * 94.48325 * 23 14 13 38 38 H 1.09006 * 110.36212 * 216.80310 * 23 14 13 39 39 H 0.96707 * 114.00561 * 67.97433 * 26 24 23 40 40 H 1.08007 * 120.05120 * 359.97264 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1990 0.0000 4 6 3.5824 1.2076 -0.0005 5 9 4.2497 2.3823 0.0000 6 6 4.2827 0.0161 -0.0016 7 6 3.5908 -1.1955 -0.0016 8 6 4.3332 -2.4742 -0.0022 9 8 3.7280 -3.5284 -0.0026 10 7 5.6809 -2.4709 -0.0032 11 6 6.4165 -3.7379 -0.0044 12 1 5.9044 -4.4818 -0.6146 13 6 6.6146 -4.2555 1.4360 14 7 7.9491 -3.8229 1.8757 15 6 8.5168 -4.0974 3.0911 16 1 7.9758 -4.6827 3.8200 17 6 9.7902 -3.6288 3.3842 18 7 10.4517 -2.9202 2.4939 19 14 10.5649 -4.0040 5.0420 20 1 9.6227 -4.8120 5.8572 21 1 11.8229 -4.7666 4.8393 22 1 10.8652 -2.7321 5.7473 23 6 8.5723 -3.0390 0.7937 24 6 7.8713 -3.5275 -0.5011 25 1 8.3028 -4.4641 -0.8542 26 8 7.9252 -2.5261 -1.5190 27 6 2.1949 -1.1957 -0.0064 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3632 0.8900 0.5139 31 1 1.6533 2.1323 0.0008 32 1 5.3627 0.0228 -0.0024 33 1 6.1639 -1.6297 -0.0032 34 1 6.5543 -5.3438 1.4502 35 1 5.8530 -3.8313 2.0903 36 1 11.3414 -2.5924 2.6987 37 1 8.3944 -1.9744 0.9456 38 1 9.6420 -3.2427 0.7454 39 1 8.8145 -2.3598 -1.8606 40 1 1.6543 -2.1307 -0.0109 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083798998.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:28:42 Heat of formation + Delta-G solvation = -75.407920 kcal Electronic energy + Delta-G solvation = -25273.215178 eV Core-core repulsion = 21389.220876 eV Total energy + Delta-G solvation = -3883.994301 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.132 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.03060 -40.25634 -38.81445 -37.57995 -35.12489 -34.02840 -33.03565 -31.62378 -30.83602 -28.53238 -27.38650 -27.02043 -24.78178 -23.85858 -22.08650 -20.66209 -20.46514 -19.77923 -18.02939 -17.11783 -16.96151 -16.55941 -16.34946 -16.02552 -15.79131 -15.46586 -14.88903 -14.64896 -14.19957 -13.95028 -13.80637 -13.57541 -13.45418 -13.06977 -12.80303 -12.48695 -12.36621 -12.34562 -11.93626 -11.82471 -11.64970 -11.38176 -11.15447 -10.98075 -10.91256 -10.24118 -10.10421 -9.91947 -9.71641 -9.24949 -9.18887 -8.87096 -8.80400 -8.64398 -6.95683 -5.75884 -3.17922 0.58924 0.95717 2.78231 3.29508 3.35234 3.41350 3.43511 3.66580 3.97817 4.34022 4.40926 4.49620 4.60703 4.87775 4.94565 5.01088 5.14811 5.24089 5.31537 5.34748 5.39313 5.49980 5.64978 5.66378 5.79378 5.82961 5.84053 6.03689 6.08503 6.17930 6.19265 6.41583 6.60123 6.61910 6.92009 7.22394 7.50146 7.67234 7.77638 8.00865 8.21528 8.40432 9.10802 9.71245 10.33576 11.28361 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.016499 B = 0.003556 C = 0.003451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.616261 B = 7872.939723 C = 8110.544551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.068 4.068 3 C -0.136 4.136 4 C 0.098 3.902 5 F -0.136 7.136 6 C -0.125 4.125 7 C -0.092 4.092 8 C 0.556 3.444 9 O -0.541 6.541 10 N -0.690 5.690 11 C 0.143 3.857 12 H 0.093 0.907 13 C 0.126 3.874 14 N -0.600 5.600 15 C -0.221 4.221 16 H 0.080 0.920 17 C -0.011 4.011 18 N -0.924 5.924 19 Si 0.917 3.083 20 H -0.279 1.279 21 H -0.290 1.290 22 H -0.290 1.290 23 C 0.127 3.873 24 C 0.063 3.937 25 H 0.073 0.927 26 O -0.567 6.567 27 C -0.073 4.073 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.138 0.862 32 H 0.142 0.858 33 H 0.405 0.595 34 H 0.038 0.962 35 H 0.033 0.967 36 H 0.252 0.748 37 H 0.020 0.980 38 H 0.112 0.888 39 H 0.379 0.621 40 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.313 7.020 -8.459 18.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.068 4.068 3 C -0.155 4.155 4 C 0.078 3.922 5 F -0.115 7.115 6 C -0.144 4.144 7 C -0.095 4.095 8 C 0.343 3.657 9 O -0.420 6.420 10 N -0.340 5.340 11 C 0.038 3.962 12 H 0.111 0.889 13 C -0.001 4.001 14 N -0.328 5.328 15 C -0.350 4.350 16 H 0.098 0.902 17 C -0.206 4.206 18 N -0.573 5.573 19 Si 0.747 3.253 20 H -0.204 1.204 21 H -0.217 1.217 22 H -0.217 1.217 23 C 0.001 3.999 24 C 0.003 3.997 25 H 0.091 0.909 26 O -0.372 6.372 27 C -0.092 4.092 28 H 0.094 0.906 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.156 0.844 32 H 0.160 0.840 33 H 0.242 0.758 34 H 0.056 0.944 35 H 0.051 0.949 36 H 0.063 0.937 37 H 0.038 0.962 38 H 0.130 0.870 39 H 0.227 0.773 40 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -15.138 6.339 -8.227 18.359 hybrid contribution 1.532 0.565 0.844 1.838 sum -13.606 6.904 -7.384 16.950 Atomic orbital electron populations 1.20818 0.89938 1.03413 1.02873 1.19706 0.96703 0.91784 0.98657 1.21171 0.92180 0.99445 1.02714 1.17473 0.90155 0.81116 1.03420 1.91528 1.80694 1.45307 1.93944 1.21377 1.01188 0.90759 1.01107 1.19854 0.94238 0.92633 1.02795 1.18068 0.82385 0.88352 0.76937 1.90754 1.68470 1.32155 1.50662 1.45634 1.05295 1.10331 1.72730 1.22060 0.91008 0.85646 0.97475 0.88886 1.21760 0.89303 0.97401 0.91630 1.44346 1.12491 1.61478 1.14458 1.19160 0.97794 1.27767 0.90231 0.90167 1.24787 0.97100 1.00058 0.98675 1.69740 1.13161 1.40959 1.33446 0.85955 0.79038 0.77491 0.82771 1.20450 1.21674 1.21702 1.22625 1.00552 0.93571 0.83134 1.23765 0.95014 0.91237 0.89713 0.90899 1.86329 1.34175 1.60254 1.56395 1.21226 0.92551 0.98660 0.96810 0.90601 0.90790 0.91129 0.84430 0.84040 0.75824 0.94400 0.94918 0.93688 0.96176 0.87015 0.77336 0.83913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.76 10.01 36.01 0.36 -0.40 16 2 C -0.07 -0.68 5.87 -104.69 -0.61 -1.29 16 3 C -0.14 -1.37 9.67 -39.43 -0.38 -1.75 16 4 C 0.10 1.18 7.29 -39.48 -0.29 0.89 16 5 F -0.14 -1.72 17.26 2.25 0.04 -1.68 16 6 C -0.12 -1.63 9.52 -39.11 -0.37 -2.00 16 7 C -0.09 -1.30 5.87 -104.98 -0.62 -1.91 16 8 C 0.56 9.45 7.77 -12.33 -0.10 9.35 16 9 O -0.54 -10.51 16.08 5.32 0.09 -10.42 16 10 N -0.69 -11.83 4.73 -52.96 -0.25 -12.08 16 11 C 0.14 2.65 3.13 -66.09 -0.21 2.44 16 12 H 0.09 1.68 7.70 -51.93 -0.40 1.28 16 13 C 0.13 2.70 6.98 -3.06 -0.02 2.67 16 14 N -0.60 -14.92 3.39 -169.93 -0.58 -15.49 16 15 C -0.22 -6.05 10.27 -15.06 -0.15 -6.20 16 16 H 0.08 2.15 7.83 -52.48 -0.41 1.73 16 17 C -0.01 -0.30 5.49 -17.43 -0.10 -0.40 16 18 N -0.92 -25.88 10.08 55.49 0.56 -25.32 16 19 Si 0.92 21.70 29.55 -169.99 -5.02 16.67 16 20 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 21 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 23 C 0.13 2.87 5.62 -2.41 -0.01 2.86 16 24 C 0.06 1.14 4.23 -24.46 -0.10 1.04 16 25 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 26 O -0.57 -8.84 12.63 -35.23 -0.44 -9.29 16 27 C -0.07 -0.89 9.24 -39.19 -0.36 -1.26 16 28 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.46 8.08 -51.93 -0.42 0.04 16 30 H 0.07 0.38 8.08 -51.93 -0.42 -0.04 16 31 H 0.14 1.05 8.06 -52.48 -0.42 0.63 16 32 H 0.14 1.79 6.40 -52.48 -0.34 1.45 16 33 H 0.41 6.64 6.23 -40.82 -0.25 6.39 16 34 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.03 0.74 8.04 -51.93 -0.42 0.32 16 36 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 37 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.11 2.83 5.85 -51.93 -0.30 2.53 16 39 H 0.38 4.50 9.12 45.56 0.42 4.91 16 40 H 0.14 1.69 7.65 -52.48 -0.40 1.28 16 LS Contribution 339.95 15.07 5.12 5.12 Total: -1.00 -31.50 339.95 -7.65 -39.15 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: -4.20 Total: 9.30 kcal Atomic # 6 Polarization: 7.00 SS G_CDS: -2.97 Total: 4.04 kcal Atomic # 7 Polarization: -52.63 SS G_CDS: -0.27 Total: -52.89 kcal Atomic # 8 Polarization: -19.35 SS G_CDS: -0.36 Total: -19.71 kcal Atomic # 9 Polarization: -1.72 SS G_CDS: 0.04 Total: -1.68 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.50 -7.65 -39.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083798998.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.255 kcal (2) G-P(sol) polarization free energy of solvation -31.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds