Wall clock time and date at job start Fri Apr 10 2020 14:28:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38335 * 119.91479 * 2 1 4 4 C 1.38547 * 120.27024 * 180.02562 * 3 2 1 5 5 F 1.35103 * 119.95562 * 180.02562 * 4 3 2 6 6 C 1.38212 * 120.08930 * 0.02562 * 4 3 2 7 7 C 1.39528 * 119.82635 * 359.97438 * 6 4 3 8 8 C 1.47851 * 120.13233 * 180.02562 * 7 6 4 9 9 O 1.21554 * 120.00229 * 180.02562 * 8 7 6 10 10 N 1.34780 * 119.99937 * 359.97438 * 8 7 6 11 11 C 1.46505 * 119.99778 * 180.02562 * 10 8 7 12 12 H 1.08996 * 110.77820 * 36.79003 * 11 10 8 13 13 C 1.54327 * 110.71733 * 273.54375 * 11 10 8 14 14 N 1.47022 * 107.27230 * 263.83086 * 13 11 10 15 15 C 1.36929 * 125.64600 * 181.02426 * 14 13 11 16 16 H 1.08004 * 120.00341 * 0.28040 * 15 14 13 17 17 C 1.38815 * 120.00031 * 179.97438 * 15 14 13 18 18 N 1.31617 * 119.99916 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99958 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47228 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.46793 * 120.00365 * 19 17 15 22 22 H 1.48500 * 109.47000 * 240.00457 * 19 17 15 23 23 C 1.47423 * 108.70234 * 1.29219 * 14 13 11 24 24 C 1.55132 * 104.72360 * 335.54986 * 23 14 13 25 25 H 1.09000 * 111.22509 * 279.17880 * 24 23 14 26 26 O 1.42895 * 110.90513 * 155.27806 * 24 23 14 27 27 C 1.37943 * 119.91145 * 180.30532 * 2 1 3 28 28 H 1.08997 * 109.47391 * 89.99751 * 1 2 3 29 29 H 1.09001 * 109.47135 * 210.00287 * 1 2 3 30 30 H 1.09005 * 109.46542 * 329.99621 * 1 2 3 31 31 H 1.08008 * 119.86548 * 0.04666 * 3 2 1 32 32 H 1.08005 * 120.08763 * 179.97438 * 6 4 3 33 33 H 0.97001 * 120.00029 * 0.02562 * 10 8 7 34 34 H 1.09004 * 109.87290 * 144.41696 * 13 11 10 35 35 H 1.08998 * 109.88021 * 23.25165 * 13 11 10 36 36 H 0.97000 * 120.00284 * 179.97438 * 18 17 15 37 37 H 1.08999 * 110.36884 * 94.48325 * 23 14 13 38 38 H 1.09006 * 110.36212 * 216.80310 * 23 14 13 39 39 H 0.96707 * 114.00561 * 67.97433 * 26 24 23 40 40 H 1.08007 * 120.05120 * 359.97264 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1990 0.0000 4 6 3.5824 1.2076 -0.0005 5 9 4.2497 2.3823 0.0000 6 6 4.2827 0.0161 -0.0016 7 6 3.5908 -1.1955 -0.0016 8 6 4.3332 -2.4742 -0.0022 9 8 3.7280 -3.5284 -0.0026 10 7 5.6809 -2.4709 -0.0032 11 6 6.4165 -3.7379 -0.0044 12 1 5.9044 -4.4818 -0.6146 13 6 6.6146 -4.2555 1.4360 14 7 7.9491 -3.8229 1.8757 15 6 8.5168 -4.0974 3.0911 16 1 7.9758 -4.6827 3.8200 17 6 9.7902 -3.6288 3.3842 18 7 10.4517 -2.9202 2.4939 19 14 10.5649 -4.0040 5.0420 20 1 9.6227 -4.8120 5.8572 21 1 11.8229 -4.7666 4.8393 22 1 10.8652 -2.7321 5.7473 23 6 8.5723 -3.0390 0.7937 24 6 7.8713 -3.5275 -0.5011 25 1 8.3028 -4.4641 -0.8542 26 8 7.9252 -2.5261 -1.5190 27 6 2.1949 -1.1957 -0.0064 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3632 0.8900 0.5139 31 1 1.6533 2.1323 0.0008 32 1 5.3627 0.0228 -0.0024 33 1 6.1639 -1.6297 -0.0032 34 1 6.5543 -5.3438 1.4502 35 1 5.8530 -3.8313 2.0903 36 1 11.3414 -2.5924 2.6987 37 1 8.3944 -1.9744 0.9456 38 1 9.6420 -3.2427 0.7454 39 1 8.8145 -2.3598 -1.8606 40 1 1.6543 -2.1307 -0.0109 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083798998.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:28:41 Heat of formation + Delta-G solvation = -97.278280 kcal Electronic energy + Delta-G solvation = -25274.163548 eV Core-core repulsion = 21389.220876 eV Total energy + Delta-G solvation = -3884.942671 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.132 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.98852 -41.50663 -40.04723 -38.96850 -36.67250 -35.52070 -34.18149 -33.26393 -31.83812 -30.23862 -28.88813 -27.96906 -26.53670 -25.13285 -22.99949 -22.34526 -21.88447 -21.23355 -19.28397 -18.81050 -18.40268 -17.71381 -17.27710 -17.16387 -17.00030 -16.76576 -16.52428 -16.04957 -15.72986 -15.43128 -14.79419 -14.66993 -14.46304 -14.44787 -14.21342 -14.11194 -13.89230 -13.21510 -13.08013 -12.91263 -12.81125 -12.77126 -12.71798 -12.64789 -12.51218 -12.02718 -11.98650 -11.68543 -11.11922 -10.86484 -10.78399 -10.26853 -9.97816 -9.77619 -8.96350 -7.82685 -5.27770 -0.39550 0.04308 1.46557 1.46960 1.57379 1.65215 1.99749 2.45301 2.59523 3.00993 3.09454 3.28677 3.50779 3.59202 3.65935 3.77845 3.97068 3.98788 4.00308 4.13956 4.28537 4.40625 4.49776 4.60557 4.64206 4.81326 4.82568 4.86127 4.87737 4.95973 5.10031 5.25155 5.37060 5.38321 5.40694 5.46046 5.69654 5.74722 6.22139 6.42239 6.83934 7.03749 7.07801 7.69474 8.31687 9.18733 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.016499 B = 0.003556 C = 0.003451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.616261 B = 7872.939723 C = 8110.544551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.059 4.059 3 C -0.122 4.122 4 C 0.086 3.914 5 F -0.141 7.141 6 C -0.133 4.133 7 C -0.112 4.112 8 C 0.555 3.445 9 O -0.571 6.571 10 N -0.690 5.690 11 C 0.150 3.850 12 H 0.103 0.897 13 C 0.127 3.873 14 N -0.618 5.618 15 C -0.242 4.242 16 H 0.078 0.922 17 C -0.059 4.059 18 N -0.944 5.944 19 Si 0.980 3.020 20 H -0.271 1.271 21 H -0.288 1.288 22 H -0.292 1.292 23 C 0.134 3.866 24 C 0.088 3.912 25 H 0.088 0.912 26 O -0.562 6.562 27 C -0.078 4.078 28 H 0.091 0.909 29 H 0.078 0.922 30 H 0.089 0.911 31 H 0.170 0.830 32 H 0.137 0.863 33 H 0.408 0.592 34 H 0.042 0.958 35 H 0.017 0.983 36 H 0.249 0.751 37 H -0.002 1.002 38 H 0.086 0.914 39 H 0.398 0.602 40 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.960 7.872 -8.933 19.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.059 4.059 3 C -0.141 4.141 4 C 0.067 3.933 5 F -0.120 7.120 6 C -0.153 4.153 7 C -0.115 4.115 8 C 0.344 3.656 9 O -0.452 6.452 10 N -0.340 5.340 11 C 0.044 3.956 12 H 0.121 0.879 13 C 0.000 4.000 14 N -0.345 5.345 15 C -0.371 4.371 16 H 0.096 0.904 17 C -0.252 4.252 18 N -0.593 5.593 19 Si 0.808 3.192 20 H -0.195 1.195 21 H -0.214 1.214 22 H -0.219 1.219 23 C 0.008 3.992 24 C 0.027 3.973 25 H 0.105 0.895 26 O -0.370 6.370 27 C -0.097 4.097 28 H 0.109 0.891 29 H 0.096 0.904 30 H 0.108 0.892 31 H 0.187 0.813 32 H 0.155 0.845 33 H 0.245 0.755 34 H 0.060 0.940 35 H 0.035 0.965 36 H 0.059 0.941 37 H 0.016 0.984 38 H 0.104 0.896 39 H 0.249 0.751 40 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -16.788 7.206 -8.726 20.246 hybrid contribution 1.981 0.364 0.978 2.239 sum -14.807 7.570 -7.748 18.346 Atomic orbital electron populations 1.20925 0.87170 1.04647 1.04199 1.20056 0.98490 0.90655 0.96723 1.21542 0.91292 1.00866 1.00365 1.17620 0.91059 0.80525 1.04067 1.91516 1.80999 1.45384 1.94066 1.21340 1.01144 0.91063 1.01740 1.19658 0.94932 0.91405 1.05527 1.18516 0.82146 0.89163 0.75800 1.90724 1.68889 1.33456 1.52102 1.45620 1.05596 1.09942 1.72835 1.21900 0.91583 0.86516 0.95564 0.87893 1.21818 0.87382 0.97565 0.93218 1.44572 1.13860 1.61662 1.14446 1.19451 0.98274 1.27928 0.91421 0.90418 1.25560 0.97536 1.00199 1.01924 1.69959 1.13102 1.41510 1.34759 0.84986 0.78081 0.77056 0.79031 1.19533 1.21432 1.21933 1.22428 0.99472 0.92205 0.85063 1.23361 0.93834 0.91984 0.88145 0.89456 1.86310 1.35948 1.59513 1.55191 1.21387 0.91803 0.99841 0.96701 0.89065 0.90355 0.89181 0.81272 0.84498 0.75485 0.93978 0.96510 0.94078 0.98443 0.89623 0.75132 0.83909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.11 10.01 71.24 0.71 -0.39 16 2 C -0.06 -1.01 5.87 -19.91 -0.12 -1.13 16 3 C -0.12 -2.11 9.67 22.37 0.22 -1.89 16 4 C 0.09 1.97 7.29 22.34 0.16 2.14 16 5 F -0.14 -3.40 17.26 44.97 0.78 -2.63 16 6 C -0.13 -3.46 9.52 22.57 0.21 -3.25 16 7 C -0.11 -3.15 5.87 -20.10 -0.12 -3.27 16 8 C 0.56 19.07 7.77 86.79 0.67 19.74 16 9 O -0.57 -22.37 16.08 -3.89 -0.06 -22.43 16 10 N -0.69 -23.89 4.73 -439.75 -2.08 -25.97 16 11 C 0.15 5.54 3.13 46.18 0.14 5.68 16 12 H 0.10 3.65 7.70 -2.39 -0.02 3.63 16 13 C 0.13 5.51 6.98 86.73 0.61 6.12 16 14 N -0.62 -31.38 3.39 -691.53 -2.35 -33.72 16 15 C -0.24 -13.47 10.27 84.04 0.86 -12.60 16 16 H 0.08 4.23 7.83 -2.91 -0.02 4.21 16 17 C -0.06 -3.28 5.49 84.86 0.47 -2.81 16 18 N -0.94 -53.84 10.08 21.65 0.22 -53.62 16 19 Si 0.98 44.96 29.55 68.60 2.03 46.99 16 20 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 21 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 22 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 23 C 0.13 6.19 5.62 86.93 0.49 6.68 16 24 C 0.09 3.11 4.23 32.06 0.14 3.25 16 25 H 0.09 2.91 8.14 -2.39 -0.02 2.89 16 26 O -0.56 -16.84 12.63 -148.98 -1.88 -18.72 16 27 C -0.08 -1.82 9.24 22.53 0.21 -1.61 16 28 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.08 0.74 8.08 -2.39 -0.02 0.72 16 30 H 0.09 0.58 8.08 -2.38 -0.02 0.56 16 31 H 0.17 1.85 8.06 -2.91 -0.02 1.83 16 32 H 0.14 3.55 6.40 -2.91 -0.02 3.53 16 33 H 0.41 13.61 6.23 -92.71 -0.58 13.03 16 34 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.02 0.78 8.04 -2.39 -0.02 0.77 16 36 H 0.25 13.79 8.31 -92.71 -0.77 13.02 16 37 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 38 H 0.09 4.45 5.85 -2.38 -0.01 4.44 16 39 H 0.40 8.80 9.12 -74.05 -0.68 8.12 16 40 H 0.14 3.27 7.65 -2.91 -0.02 3.25 16 Total: -1.00 -68.57 339.95 1.15 -67.41 By element: Atomic # 1 Polarization: 26.19 SS G_CDS: -0.16 Total: 26.04 kcal Atomic # 6 Polarization: 12.00 SS G_CDS: 4.66 Total: 16.66 kcal Atomic # 7 Polarization: -109.11 SS G_CDS: -4.21 Total: -113.31 kcal Atomic # 8 Polarization: -39.21 SS G_CDS: -1.94 Total: -41.15 kcal Atomic # 9 Polarization: -3.40 SS G_CDS: 0.78 Total: -2.63 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Total: -68.57 1.15 -67.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083798998.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.863 kcal (2) G-P(sol) polarization free energy of solvation -68.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds