Wall clock time and date at job start Fri Apr 10 2020 14:28:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37897 * 120.05797 * 2 1 4 4 C 1.38421 * 120.21727 * 179.97438 * 3 2 1 5 5 C 1.38250 * 120.33695 * 359.97438 * 4 3 2 6 6 C 1.38282 * 120.11771 * 359.77480 * 5 4 3 7 7 F 1.35093 * 120.10887 * 180.25405 * 6 5 4 8 8 C 1.39622 * 120.06324 * 179.97438 * 2 1 3 9 9 C 1.47703 * 120.16373 * 0.02695 * 8 2 1 10 10 O 1.21558 * 119.99744 * 90.00084 * 9 8 2 11 11 N 1.34771 * 119.99676 * 269.99889 * 9 8 2 12 12 C 1.46507 * 119.99771 * 180.02562 * 11 9 8 13 13 H 1.09001 * 110.63776 * 36.68348 * 12 11 9 14 14 C 1.54316 * 110.71772 * 273.54514 * 12 11 9 15 15 N 1.47022 * 107.27320 * 263.82953 * 14 12 11 16 16 C 1.36938 * 125.65145 * 181.02283 * 15 14 12 17 17 H 1.08002 * 119.99798 * 13.61610 * 16 15 14 18 18 C 1.38805 * 120.00326 * 193.61334 * 16 15 14 19 19 N 1.31623 * 120.00152 * 27.28149 * 18 16 15 20 20 Si 1.86803 * 120.00275 * 207.28323 * 18 16 15 21 21 H 1.48501 * 109.46920 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.47248 * 239.99936 * 20 18 16 23 23 H 1.48500 * 109.46962 * 119.99939 * 20 18 16 24 24 C 1.47423 * 108.69958 * 1.28573 * 15 14 12 25 25 C 1.55125 * 104.72395 * 335.55457 * 24 15 14 26 26 H 1.09001 * 111.19051 * 279.19096 * 25 24 15 27 27 O 1.42902 * 110.93665 * 155.28677 * 25 24 15 28 28 H 1.09004 * 109.47396 * 270.02734 * 1 2 3 29 29 H 1.08996 * 109.47382 * 30.03011 * 1 2 3 30 30 H 1.09008 * 109.46928 * 150.02730 * 1 2 3 31 31 H 1.07998 * 119.89319 * 359.96997 * 3 2 1 32 32 H 1.08001 * 119.83002 * 180.02562 * 4 3 2 33 33 H 1.07995 * 119.93758 * 180.02562 * 5 4 3 34 34 H 0.97003 * 120.00897 * 359.97438 * 11 9 8 35 35 H 1.08999 * 109.88637 * 144.40958 * 14 12 11 36 36 H 1.09003 * 109.88406 * 23.24623 * 14 12 11 37 37 H 0.97003 * 119.99184 * 5.85303 * 19 18 16 38 38 H 1.09002 * 110.36499 * 94.49043 * 24 15 14 39 39 H 1.09005 * 110.36367 * 216.80049 * 24 15 14 40 40 H 0.96700 * 113.99787 * 67.96452 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1935 0.0000 4 6 3.5819 1.1974 0.0005 5 6 4.2835 0.0061 0.0016 6 6 3.6049 -1.1988 0.0069 7 9 4.2907 -2.3627 0.0131 8 6 2.2064 -1.2084 0.0005 9 6 1.4730 -2.4905 0.0005 10 8 1.1716 -3.0182 -1.0522 11 7 1.1379 -3.0751 1.1677 12 6 0.4109 -4.3470 1.1677 13 1 0.7498 -4.9832 0.3501 14 6 -1.1106 -4.1061 1.0775 15 7 -1.6406 -4.1437 2.4484 16 6 -2.9554 -3.9929 2.8002 17 1 -3.7262 -4.0506 2.0459 18 6 -3.2975 -3.7660 4.1262 19 7 -2.4425 -3.1764 4.9348 20 14 -4.9712 -4.2974 4.7631 21 1 -5.7404 -4.9331 3.6633 22 1 -5.7103 -3.1104 5.2631 23 1 -4.7932 -5.2719 5.8695 24 6 -0.5212 -4.3642 3.3820 25 6 0.5682 -5.0692 2.5319 26 1 0.3638 -6.1355 2.4353 27 8 1.8682 -4.8473 3.0820 28 1 -0.3634 0.0005 1.0277 29 1 -0.3634 0.8897 -0.5143 30 1 -0.3633 -0.8903 -0.5135 31 1 1.6569 2.1284 -0.0005 32 1 4.1165 2.1358 0.0010 33 1 5.3634 0.0167 0.0024 34 1 1.3787 -2.6542 2.0078 35 1 -1.5752 -4.8897 0.4789 36 1 -1.3058 -3.1310 0.6312 37 1 -1.6086 -2.8245 4.5858 38 1 -0.1516 -3.4120 3.7626 39 1 -0.8346 -5.0067 4.2049 40 1 2.0134 -5.2795 3.9348 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084117572.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:28:17 Heat of formation + Delta-G solvation = -77.821343 kcal Electronic energy + Delta-G solvation = -26028.323993 eV Core-core repulsion = 22144.225038 eV Total energy + Delta-G solvation = -3884.098955 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.132 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.02239 -40.24648 -38.90568 -37.70943 -35.33628 -33.94947 -32.97583 -31.88114 -30.85873 -28.39196 -27.58923 -27.10045 -24.49382 -23.76840 -21.97297 -20.89355 -20.52221 -19.91599 -18.05151 -17.61836 -17.14483 -16.96831 -16.75344 -16.01640 -15.53256 -15.32727 -14.74065 -14.47660 -14.12660 -13.81948 -13.65639 -13.61650 -13.55115 -13.33621 -13.00790 -12.60688 -12.46560 -12.33795 -11.93982 -11.90575 -11.65739 -11.45388 -11.29691 -10.83286 -10.61000 -10.47555 -10.10564 -9.83326 -9.81248 -9.43374 -9.08801 -8.85224 -8.77598 -8.50011 -7.06240 -6.17660 -3.21438 0.79745 0.96676 2.67343 3.17949 3.39979 3.47918 3.50268 3.64013 3.98867 4.25217 4.49754 4.55076 4.59740 4.77738 4.97066 5.00243 5.05222 5.23404 5.27813 5.39025 5.47686 5.51584 5.58025 5.62531 5.76173 5.80408 5.93016 5.97543 6.04020 6.08429 6.22994 6.32737 6.53240 6.61678 6.65895 6.80283 6.87361 7.64724 7.71786 7.84238 8.33900 8.39944 8.92073 9.72490 10.23581 11.15620 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.018318 B = 0.004203 C = 0.003833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.204950 B = 6660.085113 C = 7302.582804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.016 4.016 3 C -0.135 4.135 4 C -0.074 4.074 5 C -0.165 4.165 6 C 0.136 3.864 7 F -0.130 7.130 8 C -0.158 4.158 9 C 0.567 3.433 10 O -0.535 6.535 11 N -0.687 5.687 12 C 0.143 3.857 13 H 0.095 0.905 14 C 0.127 3.873 15 N -0.599 5.599 16 C -0.335 4.335 17 H 0.070 0.930 18 C -0.025 4.025 19 N -0.921 5.921 20 Si 1.069 2.931 21 H -0.292 1.292 22 H -0.294 1.294 23 H -0.290 1.290 24 C 0.119 3.881 25 C 0.074 3.926 26 H 0.077 0.923 27 O -0.561 6.561 28 H 0.085 0.915 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.135 0.865 32 H 0.136 0.864 33 H 0.139 0.861 34 H 0.407 0.593 35 H 0.040 0.960 36 H 0.034 0.966 37 H 0.268 0.732 38 H 0.034 0.966 39 H 0.058 0.942 40 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.416 6.409 -6.657 15.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.017 4.017 3 C -0.153 4.153 4 C -0.092 4.092 5 C -0.184 4.184 6 C 0.116 3.884 7 F -0.108 7.108 8 C -0.162 4.162 9 C 0.352 3.648 10 O -0.413 6.413 11 N -0.337 5.337 12 C 0.038 3.962 13 H 0.113 0.887 14 C 0.001 3.999 15 N -0.328 5.328 16 C -0.463 4.463 17 H 0.087 0.913 18 C -0.226 4.226 19 N -0.563 5.563 20 Si 0.899 3.101 21 H -0.218 1.218 22 H -0.221 1.221 23 H -0.217 1.217 24 C -0.007 4.007 25 C 0.013 3.987 26 H 0.095 0.905 27 O -0.366 6.366 28 H 0.104 0.896 29 H 0.095 0.905 30 H 0.093 0.907 31 H 0.153 0.847 32 H 0.154 0.846 33 H 0.157 0.843 34 H 0.242 0.758 35 H 0.058 0.942 36 H 0.052 0.948 37 H 0.080 0.920 38 H 0.051 0.949 39 H 0.076 0.924 40 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 11.221 6.194 -6.588 14.411 hybrid contribution 1.123 -0.166 -0.449 1.221 sum 12.344 6.028 -7.037 15.435 Atomic orbital electron populations 1.20971 0.89616 1.03897 1.03863 1.19863 0.96723 0.90770 0.94313 1.21060 0.94202 0.97643 1.02403 1.21111 0.94051 0.97586 0.96436 1.21052 1.01002 0.90836 1.05507 1.17629 0.88290 0.81956 1.00515 1.91543 1.79274 1.46571 1.93428 1.19898 0.92266 0.94984 1.09084 1.17921 0.78836 0.83756 0.84323 1.90790 1.54980 1.64269 1.31224 1.45686 1.56459 1.23240 1.08294 1.22059 0.92668 0.84376 0.97094 0.88684 1.21765 0.89593 0.99336 0.89219 1.44420 1.03520 1.85094 0.99734 1.19832 0.80851 1.49579 0.95989 0.91264 1.25732 1.05457 0.98210 0.93209 1.70758 1.11966 1.34516 1.39023 0.83475 0.74803 0.76391 0.75442 1.21793 1.22148 1.21660 1.22220 0.87638 0.97579 0.93280 1.23490 0.83265 0.98482 0.93433 0.90485 1.86402 1.32169 1.77665 1.40361 0.89614 0.90464 0.90666 0.84679 0.84629 0.84277 0.75805 0.94225 0.94802 0.91979 0.94866 0.92414 0.77331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.66 9.62 36.00 0.35 -1.31 16 2 C -0.02 -0.21 5.91 -104.23 -0.62 -0.82 16 3 C -0.13 -1.36 9.68 -39.64 -0.38 -1.75 16 4 C -0.07 -0.66 10.04 -39.51 -0.40 -1.06 16 5 C -0.17 -1.74 10.01 -39.56 -0.40 -2.14 16 6 C 0.14 1.91 7.29 -38.96 -0.28 1.62 16 7 F -0.13 -2.01 16.83 2.25 0.04 -1.97 16 8 C -0.16 -2.42 5.64 -104.91 -0.59 -3.01 16 9 C 0.57 10.22 5.36 -12.40 -0.07 10.15 16 10 O -0.54 -11.21 16.83 5.32 0.09 -11.12 16 11 N -0.69 -12.14 4.78 -53.02 -0.25 -12.39 16 12 C 0.14 2.66 3.14 -66.10 -0.21 2.45 16 13 H 0.10 1.75 7.69 -51.93 -0.40 1.35 16 14 C 0.13 2.72 6.98 -3.07 -0.02 2.70 16 15 N -0.60 -14.69 3.33 -169.94 -0.57 -15.25 16 16 C -0.34 -9.23 10.05 -15.06 -0.15 -9.38 16 17 H 0.07 1.92 7.96 -52.49 -0.42 1.50 16 18 C -0.02 -0.69 5.09 -17.43 -0.09 -0.78 16 19 N -0.92 -26.87 12.82 55.49 0.71 -26.16 16 20 Si 1.07 24.89 30.00 -169.99 -5.10 19.79 16 21 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 22 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 23 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 24 C 0.12 2.60 4.93 -2.41 -0.01 2.59 16 25 C 0.07 1.29 4.23 -24.47 -0.10 1.19 16 26 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 27 O -0.56 -8.64 12.63 -35.23 -0.45 -9.08 16 28 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 29 H 0.08 0.80 8.09 -51.93 -0.42 0.38 16 30 H 0.07 1.16 7.08 -51.92 -0.37 0.79 16 31 H 0.14 1.02 8.06 -52.49 -0.42 0.59 16 32 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 33 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 34 H 0.41 6.98 8.18 -40.82 -0.33 6.65 16 35 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.03 0.77 8.04 -51.93 -0.42 0.35 16 37 H 0.27 7.79 5.83 -40.82 -0.24 7.56 16 38 H 0.03 0.78 6.84 -51.93 -0.36 0.42 16 39 H 0.06 1.37 7.73 -51.93 -0.40 0.97 16 40 H 0.38 4.30 9.12 45.56 0.42 4.71 16 LS Contribution 341.67 15.07 5.15 5.15 Total: -1.00 -33.41 341.67 -7.62 -41.02 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: -4.27 Total: 9.56 kcal Atomic # 6 Polarization: 3.43 SS G_CDS: -2.97 Total: 0.45 kcal Atomic # 7 Polarization: -53.69 SS G_CDS: -0.11 Total: -53.80 kcal Atomic # 8 Polarization: -19.85 SS G_CDS: -0.36 Total: -20.20 kcal Atomic # 9 Polarization: -2.01 SS G_CDS: 0.04 Total: -1.97 kcal Atomic # 14 Polarization: 24.89 SS G_CDS: -5.10 Total: 19.79 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -33.41 -7.62 -41.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084117572.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.799 kcal (2) G-P(sol) polarization free energy of solvation -33.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds