Wall clock time and date at job start Fri Apr 10 2020 14:30:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30353 * 126.00563 * 2 1 4 4 N 1.39896 * 109.04565 * 179.97438 * 3 2 1 5 5 C 1.46501 * 125.70155 * 180.02562 * 4 3 2 6 6 C 1.34122 * 108.60753 * 359.72592 * 4 3 2 7 7 C 1.50695 * 126.33727 * 180.26966 * 6 4 3 8 8 C 1.38627 * 107.33461 * 0.43280 * 6 4 3 9 9 C 1.46924 * 126.48832 * 179.83570 * 8 6 4 10 10 O 1.21421 * 120.00291 * 94.49501 * 9 8 6 11 11 C 1.49306 * 119.99996 * 274.49725 * 9 8 6 12 12 O 1.21371 * 120.00191 * 354.76440 * 11 9 8 13 13 N 1.34776 * 120.00380 * 174.76984 * 11 9 8 14 14 C 1.46498 * 120.00421 * 179.97438 * 13 11 9 15 15 C 1.50698 * 109.47083 * 179.97438 * 14 13 11 16 16 O 1.21291 * 120.00125 * 0.02562 * 15 14 13 17 17 N 1.34778 * 119.99578 * 179.97438 * 15 14 13 18 18 C 1.37100 * 119.99577 * 180.02562 * 17 15 14 19 19 H 1.08000 * 120.00547 * 359.97438 * 18 17 15 20 20 C 1.38952 * 119.99577 * 180.02562 * 18 17 15 21 21 N 1.31407 * 120.00539 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99629 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47564 * 60.00061 * 22 20 18 24 24 H 1.48503 * 109.47179 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47065 * 299.99494 * 22 20 18 26 26 H 1.08994 * 109.46794 * 274.90512 * 1 2 3 27 27 H 1.09004 * 109.46919 * 34.90073 * 1 2 3 28 28 H 1.08991 * 109.46883 * 154.90311 * 1 2 3 29 29 H 1.09006 * 109.47255 * 89.96656 * 5 4 3 30 30 H 1.08992 * 109.47665 * 209.97315 * 5 4 3 31 31 H 1.09006 * 109.46612 * 329.97373 * 5 4 3 32 32 H 1.09002 * 109.47163 * 270.19859 * 7 6 4 33 33 H 1.09000 * 109.47177 * 30.19205 * 7 6 4 34 34 H 1.08994 * 109.48016 * 150.19694 * 7 6 4 35 35 H 0.97003 * 119.99868 * 359.72069 * 13 11 9 36 36 H 1.09003 * 109.46741 * 299.99878 * 14 13 11 37 37 H 1.09004 * 109.47205 * 59.99666 * 14 13 11 38 38 H 0.97001 * 120.00665 * 359.97438 * 17 15 14 39 39 H 0.96994 * 120.00545 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2734 1.0545 0.0000 4 7 3.6115 0.6464 0.0006 5 6 4.7763 1.5350 0.0013 6 6 3.6500 -0.6942 0.0070 7 6 4.8891 -1.5518 0.0156 8 6 2.3392 -1.1452 0.0006 9 6 1.8973 -2.5464 0.0008 10 8 1.6302 -3.0986 1.0486 11 6 1.7766 -3.2913 -1.2875 12 8 1.9511 -2.7142 -2.3409 13 7 1.4738 -4.6046 -1.2809 14 6 1.3548 -5.3354 -2.5450 15 6 1.0127 -6.7755 -2.2624 16 8 0.8806 -7.1541 -1.1177 17 7 0.8523 -7.6426 -3.2817 18 6 0.5405 -8.9526 -3.0246 19 1 0.4238 -9.2900 -2.0054 20 6 0.3758 -9.8466 -4.0755 21 7 0.5183 -9.4364 -5.3158 22 14 -0.0498 -11.6315 -3.7253 23 1 -1.3394 -11.6983 -2.9920 24 1 -0.1695 -12.3725 -5.0067 25 1 1.0219 -12.2429 -2.8989 26 1 -0.3633 0.0879 1.0239 27 1 -0.3633 0.8429 -0.5880 28 1 -0.3633 -0.9306 -0.4359 29 1 5.0643 1.7557 1.0292 30 1 5.6053 1.0478 -0.5117 31 1 4.5256 2.4629 -0.5129 32 1 5.1937 -1.7605 -1.0100 33 1 5.6915 -1.0258 0.5329 34 1 4.6786 -2.4895 0.5300 35 1 1.3382 -5.0668 -0.4389 36 1 0.5679 -4.8868 -3.1513 37 1 2.3012 -5.2861 -3.0836 38 1 0.9568 -7.3396 -4.1973 39 1 0.4037 -10.0605 -6.0493 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001258173892.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:30:17 Heat of formation + Delta-G solvation = -29.895357 kcal Electronic energy + Delta-G solvation = -24499.499839 eV Core-core repulsion = 20637.399072 eV Total energy + Delta-G solvation = -3862.100767 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.132 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.70426 -40.08343 -38.58311 -37.90684 -34.65837 -34.46920 -33.74914 -32.38589 -31.41201 -29.84109 -28.60469 -27.87407 -26.19208 -25.02261 -23.83506 -21.19991 -19.84657 -19.77609 -19.30961 -18.21425 -17.70476 -17.03484 -16.11054 -16.03944 -15.60929 -15.51432 -15.00457 -14.66598 -14.55202 -14.16436 -14.04539 -13.77565 -13.59533 -13.55264 -13.50585 -13.19903 -12.93305 -12.72496 -12.26291 -12.23442 -12.19688 -11.98590 -11.65595 -11.58688 -11.11645 -10.86723 -10.51559 -10.32792 -9.64717 -9.51295 -9.39102 -8.98081 -8.71535 -8.65317 -8.12596 -6.53404 -3.95499 0.95109 1.46139 2.08301 2.24786 2.96733 3.05707 3.13178 3.21127 3.25491 3.70519 4.06404 4.12368 4.20193 4.42274 4.58542 4.74562 4.79155 4.80852 5.00228 5.00595 5.05447 5.13057 5.14602 5.43014 5.46500 5.47913 5.66571 5.76264 5.78167 5.85904 6.00257 6.29658 6.45177 6.62060 6.81723 7.41785 7.44406 7.61442 7.88672 8.14465 8.42543 9.02470 9.36067 9.83994 10.63327 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.031434 B = 0.002518 C = 0.002484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.535288 B =11119.417006 C =11268.112627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.125 3.875 3 N -0.298 5.298 4 N -0.360 5.360 5 C 0.098 3.902 6 C 0.137 3.863 7 C -0.102 4.102 8 C -0.299 4.299 9 C 0.440 3.560 10 O -0.407 6.407 11 C 0.475 3.525 12 O -0.511 6.511 13 N -0.680 5.680 14 C 0.105 3.895 15 C 0.426 3.574 16 O -0.594 6.594 17 N -0.547 5.547 18 C -0.306 4.306 19 H 0.106 0.894 20 C 0.026 3.974 21 N -0.895 5.895 22 Si 0.934 3.066 23 H -0.272 1.272 24 H -0.283 1.283 25 H -0.272 1.272 26 H 0.083 0.917 27 H 0.081 0.919 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.090 0.910 31 H 0.094 0.906 32 H 0.093 0.907 33 H 0.079 0.921 34 H 0.088 0.912 35 H 0.420 0.580 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.396 0.604 39 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.950 19.541 7.452 22.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.042 4.042 3 N -0.120 5.120 4 N -0.139 5.139 5 C -0.043 4.043 6 C 0.006 3.994 7 C -0.160 4.160 8 C -0.312 4.312 9 C 0.307 3.693 10 O -0.275 6.275 11 C 0.257 3.743 12 O -0.387 6.387 13 N -0.337 5.337 14 C -0.022 4.022 15 C 0.211 3.789 16 O -0.480 6.480 17 N -0.182 5.182 18 C -0.435 4.435 19 H 0.123 0.877 20 C -0.177 4.177 21 N -0.535 5.535 22 Si 0.761 3.239 23 H -0.197 1.197 24 H -0.209 1.209 25 H -0.197 1.197 26 H 0.102 0.898 27 H 0.100 0.900 28 H 0.096 0.904 29 H 0.096 0.904 30 H 0.109 0.891 31 H 0.112 0.888 32 H 0.111 0.889 33 H 0.098 0.902 34 H 0.107 0.893 35 H 0.260 0.740 36 H 0.108 0.892 37 H 0.107 0.893 38 H 0.230 0.770 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 7.975 20.639 7.835 23.472 hybrid contribution -0.105 -1.721 -0.276 1.746 sum 7.870 18.918 7.558 21.839 Atomic orbital electron populations 1.20284 0.85963 1.03925 1.03521 1.22257 0.96756 0.88473 0.96720 1.77022 0.85813 1.22279 1.26848 1.48047 1.05948 1.03945 1.55987 1.21943 0.84168 0.94553 1.03661 1.21359 0.95696 0.84720 0.97614 1.20619 0.92246 0.98750 1.04424 1.19876 0.92655 0.93987 1.24678 1.21730 0.73077 0.86389 0.88084 1.90616 1.33162 1.69013 1.34669 1.20690 0.79773 0.82933 0.90909 1.90743 1.48169 1.67968 1.31798 1.45711 1.67692 1.08625 1.11629 1.21098 1.03230 0.92053 0.85842 1.19672 0.86071 0.86719 0.86401 1.90526 1.57890 1.78545 1.21038 1.41777 1.59680 1.08968 1.07784 1.19694 1.44878 0.83734 0.95187 0.87655 1.25327 0.96927 1.00809 0.94589 1.69598 1.48549 1.36797 0.98531 0.85866 0.79345 0.81171 0.77560 1.19724 1.20852 1.19749 0.89827 0.89986 0.90431 0.90402 0.89141 0.88781 0.88900 0.90186 0.89330 0.74043 0.89225 0.89286 0.77006 0.91499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.82 10.32 36.01 0.37 -0.45 16 2 C 0.12 1.66 7.27 -81.95 -0.60 1.07 16 3 N -0.30 -3.93 12.48 33.94 0.42 -3.50 16 4 N -0.36 -3.91 3.97 -63.22 -0.25 -4.16 16 5 C 0.10 0.55 11.05 59.85 0.66 1.21 16 6 C 0.14 1.58 7.02 -81.45 -0.57 1.01 16 7 C -0.10 -0.81 9.70 36.00 0.35 -0.46 16 8 C -0.30 -4.15 5.46 -104.97 -0.57 -4.72 16 9 C 0.44 6.53 6.31 -31.46 -0.20 6.33 16 10 O -0.41 -6.52 17.25 5.44 0.09 -6.42 16 11 C 0.48 7.73 7.86 -11.65 -0.09 7.64 16 12 O -0.51 -9.19 16.66 5.48 0.09 -9.10 16 13 N -0.68 -11.65 5.52 -61.96 -0.34 -11.99 16 14 C 0.10 1.88 6.15 -5.20 -0.03 1.85 16 15 C 0.43 9.65 7.85 -10.99 -0.09 9.56 16 16 O -0.59 -15.23 15.24 5.55 0.08 -15.15 16 17 N -0.55 -13.35 5.29 -10.96 -0.06 -13.41 16 18 C -0.31 -8.22 9.68 -14.93 -0.14 -8.36 16 19 H 0.11 2.95 7.16 -52.49 -0.38 2.58 16 20 C 0.03 0.69 5.50 -17.47 -0.10 0.59 16 21 N -0.89 -23.59 13.05 55.50 0.72 -22.87 16 22 Si 0.93 20.38 29.55 -169.99 -5.02 15.36 16 23 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 24 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 25 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 26 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 27 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 28 H 0.08 0.82 7.90 -51.93 -0.41 0.41 16 29 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.09 0.31 7.63 -51.93 -0.40 -0.09 16 31 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.08 0.41 7.71 -51.93 -0.40 0.01 16 34 H 0.09 0.74 7.98 -51.93 -0.41 0.33 16 35 H 0.42 7.49 6.92 -40.82 -0.28 7.20 16 36 H 0.09 1.51 8.14 -51.93 -0.42 1.08 16 37 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 38 H 0.40 9.22 7.90 -40.82 -0.32 8.90 16 39 H 0.28 6.87 8.31 -40.82 -0.34 6.53 16 LS Contribution 353.01 15.07 5.32 5.32 Total: -1.00 -33.79 353.01 -4.64 -38.43 By element: Atomic # 1 Polarization: 16.92 SS G_CDS: -4.70 Total: 12.23 kcal Atomic # 6 Polarization: 16.27 SS G_CDS: -1.01 Total: 15.27 kcal Atomic # 7 Polarization: -56.43 SS G_CDS: 0.50 Total: -55.93 kcal Atomic # 8 Polarization: -30.94 SS G_CDS: 0.27 Total: -30.67 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -33.79 -4.64 -38.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258173892.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.531 kcal (2) G-P(sol) polarization free energy of solvation -33.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds