Wall clock time and date at job start Fri Apr 10 2020 14:30:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30353 * 126.00563 * 2 1 4 4 N 1.39896 * 109.04565 * 179.97438 * 3 2 1 5 5 C 1.46501 * 125.70155 * 180.02562 * 4 3 2 6 6 C 1.34122 * 108.60753 * 359.72592 * 4 3 2 7 7 C 1.50695 * 126.33727 * 180.26966 * 6 4 3 8 8 C 1.38627 * 107.33461 * 0.43280 * 6 4 3 9 9 C 1.46924 * 126.48832 * 179.83570 * 8 6 4 10 10 O 1.21421 * 120.00291 * 94.49501 * 9 8 6 11 11 C 1.49306 * 119.99996 * 274.49725 * 9 8 6 12 12 O 1.21371 * 120.00191 * 354.76440 * 11 9 8 13 13 N 1.34776 * 120.00380 * 174.76984 * 11 9 8 14 14 C 1.46498 * 120.00421 * 179.97438 * 13 11 9 15 15 C 1.50698 * 109.47083 * 179.97438 * 14 13 11 16 16 O 1.21291 * 120.00125 * 0.02562 * 15 14 13 17 17 N 1.34778 * 119.99578 * 179.97438 * 15 14 13 18 18 C 1.37100 * 119.99577 * 180.02562 * 17 15 14 19 19 H 1.08000 * 120.00547 * 359.97438 * 18 17 15 20 20 C 1.38952 * 119.99577 * 180.02562 * 18 17 15 21 21 N 1.31407 * 120.00539 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99629 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47564 * 60.00061 * 22 20 18 24 24 H 1.48503 * 109.47179 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47065 * 299.99494 * 22 20 18 26 26 H 1.08994 * 109.46794 * 274.90512 * 1 2 3 27 27 H 1.09004 * 109.46919 * 34.90073 * 1 2 3 28 28 H 1.08991 * 109.46883 * 154.90311 * 1 2 3 29 29 H 1.09006 * 109.47255 * 89.96656 * 5 4 3 30 30 H 1.08992 * 109.47665 * 209.97315 * 5 4 3 31 31 H 1.09006 * 109.46612 * 329.97373 * 5 4 3 32 32 H 1.09002 * 109.47163 * 270.19859 * 7 6 4 33 33 H 1.09000 * 109.47177 * 30.19205 * 7 6 4 34 34 H 1.08994 * 109.48016 * 150.19694 * 7 6 4 35 35 H 0.97003 * 119.99868 * 359.72069 * 13 11 9 36 36 H 1.09003 * 109.46741 * 299.99878 * 14 13 11 37 37 H 1.09004 * 109.47205 * 59.99666 * 14 13 11 38 38 H 0.97001 * 120.00665 * 359.97438 * 17 15 14 39 39 H 0.96994 * 120.00545 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2734 1.0545 0.0000 4 7 3.6115 0.6464 0.0006 5 6 4.7763 1.5350 0.0013 6 6 3.6500 -0.6942 0.0070 7 6 4.8891 -1.5518 0.0156 8 6 2.3392 -1.1452 0.0006 9 6 1.8973 -2.5464 0.0008 10 8 1.6302 -3.0986 1.0486 11 6 1.7766 -3.2913 -1.2875 12 8 1.9511 -2.7142 -2.3409 13 7 1.4738 -4.6046 -1.2809 14 6 1.3548 -5.3354 -2.5450 15 6 1.0127 -6.7755 -2.2624 16 8 0.8806 -7.1541 -1.1177 17 7 0.8523 -7.6426 -3.2817 18 6 0.5405 -8.9526 -3.0246 19 1 0.4238 -9.2900 -2.0054 20 6 0.3758 -9.8466 -4.0755 21 7 0.5183 -9.4364 -5.3158 22 14 -0.0498 -11.6315 -3.7253 23 1 -1.3394 -11.6983 -2.9920 24 1 -0.1695 -12.3725 -5.0067 25 1 1.0219 -12.2429 -2.8989 26 1 -0.3633 0.0879 1.0239 27 1 -0.3633 0.8429 -0.5880 28 1 -0.3633 -0.9306 -0.4359 29 1 5.0643 1.7557 1.0292 30 1 5.6053 1.0478 -0.5117 31 1 4.5256 2.4629 -0.5129 32 1 5.1937 -1.7605 -1.0100 33 1 5.6915 -1.0258 0.5329 34 1 4.6786 -2.4895 0.5300 35 1 1.3382 -5.0668 -0.4389 36 1 0.5679 -4.8868 -3.1513 37 1 2.3012 -5.2861 -3.0836 38 1 0.9568 -7.3396 -4.1973 39 1 0.4037 -10.0605 -6.0493 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001258173892.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:30:16 Heat of formation + Delta-G solvation = -55.612860 kcal Electronic energy + Delta-G solvation = -24500.615034 eV Core-core repulsion = 20637.399072 eV Total energy + Delta-G solvation = -3863.215962 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.132 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.62150 -41.37017 -40.21717 -39.36852 -36.31037 -35.49136 -35.26633 -33.38235 -33.19206 -30.55841 -29.95129 -28.95849 -27.11500 -26.57434 -25.10941 -22.31836 -21.45195 -20.71429 -20.56498 -20.03291 -19.08652 -18.11487 -17.44788 -17.17493 -16.90873 -16.79818 -16.50483 -16.17257 -15.92291 -15.73402 -15.20589 -15.06532 -14.65310 -14.45509 -14.19046 -14.07165 -14.01035 -13.58232 -13.53948 -13.49390 -13.48023 -12.96378 -12.91077 -12.90089 -12.76173 -12.46571 -12.12966 -11.80362 -11.56573 -10.78838 -10.57304 -10.39101 -10.21166 -10.09466 -9.61537 -8.50800 -6.00877 -0.25891 0.60184 1.18924 1.38441 1.40256 1.43895 1.54181 1.74261 1.79031 1.90965 2.29327 2.99772 3.13371 3.16358 3.41594 3.46225 3.85762 3.98552 4.18135 4.21294 4.30309 4.37992 4.38914 4.39508 4.54573 4.63288 4.66156 4.69210 4.83005 4.92415 4.97779 5.01209 5.38749 5.41459 5.60722 5.89857 5.91508 6.25442 6.48203 6.52684 6.77723 7.03886 7.43300 7.94461 8.65687 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.031434 B = 0.002518 C = 0.002484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.535288 B =11119.417006 C =11268.112627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.111 3.889 3 N -0.321 5.321 4 N -0.357 5.357 5 C 0.084 3.916 6 C 0.143 3.857 7 C -0.103 4.103 8 C -0.339 4.339 9 C 0.456 3.544 10 O -0.423 6.423 11 C 0.482 3.518 12 O -0.525 6.525 13 N -0.684 5.684 14 C 0.117 3.883 15 C 0.430 3.570 16 O -0.625 6.625 17 N -0.556 5.556 18 C -0.338 4.338 19 H 0.085 0.915 20 C -0.008 4.008 21 N -0.914 5.914 22 Si 0.995 3.005 23 H -0.271 1.271 24 H -0.271 1.271 25 H -0.270 1.270 26 H 0.095 0.905 27 H 0.093 0.907 28 H 0.071 0.929 29 H 0.097 0.903 30 H 0.118 0.882 31 H 0.099 0.901 32 H 0.101 0.899 33 H 0.114 0.886 34 H 0.081 0.919 35 H 0.417 0.583 36 H 0.106 0.894 37 H 0.109 0.891 38 H 0.400 0.600 39 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.170 20.293 7.364 23.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.055 4.055 3 N -0.143 5.143 4 N -0.135 5.135 5 C -0.054 4.054 6 C 0.010 3.990 7 C -0.161 4.161 8 C -0.353 4.353 9 C 0.324 3.676 10 O -0.292 6.292 11 C 0.265 3.735 12 O -0.402 6.402 13 N -0.339 5.339 14 C -0.010 4.010 15 C 0.217 3.783 16 O -0.513 6.513 17 N -0.192 5.192 18 C -0.467 4.467 19 H 0.103 0.897 20 C -0.209 4.209 21 N -0.554 5.554 22 Si 0.818 3.182 23 H -0.196 1.196 24 H -0.196 1.196 25 H -0.195 1.195 26 H 0.114 0.886 27 H 0.112 0.888 28 H 0.089 0.911 29 H 0.115 0.885 30 H 0.136 0.864 31 H 0.118 0.882 32 H 0.120 0.880 33 H 0.132 0.868 34 H 0.100 0.900 35 H 0.256 0.744 36 H 0.124 0.876 37 H 0.127 0.873 38 H 0.235 0.765 39 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 9.209 21.438 7.731 24.580 hybrid contribution -0.406 -1.845 -0.230 1.903 sum 8.802 19.594 7.500 22.752 Atomic orbital electron populations 1.20362 0.84875 1.04069 1.04476 1.22627 0.97832 0.88393 0.96689 1.76952 0.87110 1.22583 1.27691 1.48477 1.06250 1.04370 1.54433 1.22409 0.83174 0.94399 1.05463 1.21862 0.96028 0.85380 0.95705 1.20783 0.91688 0.98261 1.05348 1.19970 0.94181 0.93224 1.27880 1.21560 0.72320 0.86720 0.86960 1.90608 1.34142 1.69540 1.34911 1.20948 0.78861 0.82339 0.91397 1.90730 1.48821 1.68149 1.32519 1.45737 1.68077 1.09010 1.11102 1.20990 1.04658 0.88784 0.86551 1.20390 0.84152 0.88251 0.85494 1.90505 1.58754 1.79705 1.22348 1.41808 1.60335 1.08685 1.08342 1.19691 1.46984 0.85315 0.94734 0.89665 1.26096 0.96216 1.04388 0.94240 1.69658 1.48567 1.38132 0.99071 0.84953 0.78950 0.76456 0.77799 1.19588 1.19572 1.19503 0.88626 0.88824 0.91057 0.88504 0.86373 0.88221 0.88039 0.86751 0.89980 0.74401 0.87628 0.87343 0.76514 0.91010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.66 10.32 71.24 0.73 -0.92 16 2 C 0.11 2.92 7.27 43.60 0.32 3.23 16 3 N -0.32 -8.18 12.48 -46.54 -0.58 -8.76 16 4 N -0.36 -7.07 3.97 -353.92 -1.41 -8.48 16 5 C 0.08 0.71 11.05 127.77 1.41 2.12 16 6 C 0.14 3.08 7.02 42.30 0.30 3.37 16 7 C -0.10 -1.39 9.70 71.23 0.69 -0.70 16 8 C -0.34 -9.23 5.46 -20.09 -0.11 -9.34 16 9 C 0.46 13.47 6.31 27.53 0.17 13.64 16 10 O -0.42 -13.63 17.25 -3.47 -0.06 -13.69 16 11 C 0.48 15.43 7.86 87.22 0.69 16.12 16 12 O -0.53 -18.44 16.66 -3.31 -0.06 -18.49 16 13 N -0.68 -23.14 5.52 -468.28 -2.58 -25.72 16 14 C 0.12 4.10 6.15 85.63 0.53 4.63 16 15 C 0.43 19.57 7.85 87.66 0.69 20.26 16 16 O -0.63 -32.57 15.24 -3.06 -0.05 -32.61 16 17 N -0.56 -27.38 5.29 -306.98 -1.62 -29.00 16 18 C -0.34 -18.43 9.68 84.04 0.81 -17.61 16 19 H 0.09 4.91 7.16 -2.91 -0.02 4.89 16 20 C -0.01 -0.44 5.50 84.93 0.47 0.03 16 21 N -0.91 -47.83 13.05 21.66 0.28 -47.54 16 22 Si 1.00 41.40 29.55 68.60 2.03 43.43 16 23 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 24 H -0.27 -10.67 7.11 99.48 0.71 -9.97 16 25 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 26 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 27 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.07 1.54 7.90 -2.39 -0.02 1.52 16 29 H 0.10 0.49 8.14 -2.38 -0.02 0.47 16 30 H 0.12 0.35 7.63 -2.39 -0.02 0.33 16 31 H 0.10 0.76 8.14 -2.38 -0.02 0.74 16 32 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.11 0.73 7.71 -2.39 -0.02 0.71 16 34 H 0.08 1.25 7.98 -2.39 -0.02 1.23 16 35 H 0.42 14.94 6.92 -92.71 -0.64 14.30 16 36 H 0.11 3.42 8.14 -2.39 -0.02 3.40 16 37 H 0.11 3.43 8.14 -2.38 -0.02 3.41 16 38 H 0.40 18.71 7.90 -92.71 -0.73 17.98 16 39 H 0.28 13.75 8.31 -92.71 -0.77 12.98 16 Total: -1.00 -72.70 353.01 2.40 -70.30 By element: Atomic # 1 Polarization: 35.99 SS G_CDS: -0.25 Total: 35.74 kcal Atomic # 6 Polarization: 28.13 SS G_CDS: 6.70 Total: 34.83 kcal Atomic # 7 Polarization: -113.59 SS G_CDS: -5.91 Total: -119.50 kcal Atomic # 8 Polarization: -64.63 SS G_CDS: -0.16 Total: -64.79 kcal Atomic # 14 Polarization: 41.40 SS G_CDS: 2.03 Total: 43.43 kcal Total: -72.70 2.40 -70.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258173892.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.688 kcal (2) G-P(sol) polarization free energy of solvation -72.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds