Wall clock time and date at job start Fri Apr 10 2020 14:29:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38093 * 120.35451 * 2 1 4 4 N 1.31936 * 120.82666 * 179.97438 * 3 2 1 5 5 C 1.32269 * 121.65475 * 0.02562 * 4 3 2 6 6 O 1.35676 * 119.68880 * 179.97438 * 5 4 3 7 7 C 1.38883 * 120.63076 * 0.02562 * 5 4 3 8 8 C 1.50699 * 120.44275 * 180.02562 * 7 5 4 9 9 N 1.46499 * 109.46700 * 284.99295 * 8 7 5 10 10 C 1.34784 * 119.99893 * 180.02562 * 9 8 7 11 11 O 1.21588 * 119.99858 * 359.97438 * 10 9 8 12 12 N 1.34773 * 119.99935 * 179.72905 * 10 9 8 13 13 C 1.46496 * 119.99973 * 180.02562 * 12 10 9 14 14 C 1.50703 * 109.47316 * 179.97438 * 13 12 10 15 15 O 1.21287 * 119.99956 * 359.97438 * 14 13 12 16 16 N 1.34778 * 119.99967 * 179.97438 * 14 13 12 17 17 C 1.37095 * 120.00021 * 179.97438 * 16 14 13 18 18 H 1.08002 * 119.99918 * 0.02562 * 17 16 14 19 19 C 1.38949 * 120.00116 * 180.02562 * 17 16 14 20 20 N 1.31406 * 120.00039 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99723 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47502 * 60.00109 * 21 19 17 23 23 H 1.48506 * 109.46694 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.47142 * 299.99408 * 21 19 17 25 25 C 1.38420 * 119.11062 * 0.26869 * 7 5 4 26 26 H 1.09001 * 109.47598 * 89.99133 * 1 2 3 27 27 H 1.09000 * 109.47151 * 209.99774 * 1 2 3 28 28 H 1.09000 * 109.47129 * 329.99127 * 1 2 3 29 29 H 1.07995 * 119.58619 * 0.02562 * 3 2 1 30 30 H 0.96695 * 114.00139 * 270.03004 * 6 5 4 31 31 H 1.08998 * 109.46743 * 164.99771 * 8 7 5 32 32 H 1.08994 * 109.47542 * 44.99630 * 8 7 5 33 33 H 0.97005 * 120.00261 * 0.02562 * 9 8 7 34 34 H 0.97004 * 120.00018 * 359.97438 * 12 10 9 35 35 H 1.09007 * 109.47081 * 299.99672 * 13 12 10 36 36 H 1.08997 * 109.47795 * 59.99548 * 13 12 10 37 37 H 0.96997 * 120.00370 * 0.02562 * 16 14 13 38 38 H 0.97005 * 119.99866 * 180.02562 * 20 19 17 39 39 H 1.07997 * 120.75256 * 179.72816 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2048 1.1916 0.0000 4 7 3.5242 1.2025 0.0005 5 6 4.2276 0.0823 0.0005 6 8 5.5831 0.1401 0.0005 7 6 3.5918 -1.1524 -0.0005 8 6 4.3974 -2.4260 0.0001 9 7 4.9619 -2.6473 -1.3335 10 6 5.7240 -3.7333 -1.5710 11 8 5.9433 -4.5291 -0.6783 12 7 6.2389 -3.9397 -2.7993 13 6 7.0667 -5.1204 -3.0576 14 6 7.5133 -5.1158 -4.4970 15 8 7.1730 -4.2151 -5.2346 16 7 8.2907 -6.1125 -4.9646 17 6 8.6965 -6.1086 -6.2741 18 1 8.3935 -5.3066 -6.9309 19 6 9.4975 -7.1365 -6.7563 20 7 9.8657 -8.1126 -5.9573 21 14 10.0510 -7.1306 -8.5404 22 1 10.8421 -5.9030 -8.8094 23 1 10.8897 -8.3279 -8.8024 24 1 8.8607 -7.1569 -9.4281 25 6 2.2084 -1.1976 -0.0073 26 1 -0.3634 0.0002 -1.0276 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3633 0.8899 0.5140 29 1 1.6639 2.1263 0.0004 30 1 5.9760 0.1572 -0.8828 31 1 3.7524 -3.2637 0.2651 32 1 5.2049 -2.3449 0.7276 33 1 4.7873 -2.0122 -2.0457 34 1 6.0606 -3.3069 -3.5126 35 1 7.9402 -5.1014 -2.4058 36 1 6.4861 -6.0216 -2.8607 37 1 8.5625 -6.8331 -4.3748 38 1 10.4253 -8.8299 -6.2939 39 1 1.6867 -2.1432 -0.0126 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001682186567.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:29:40 Heat of formation + Delta-G solvation = -74.808892 kcal Electronic energy + Delta-G solvation = -23925.274932 eV Core-core repulsion = 20061.226568 eV Total energy + Delta-G solvation = -3864.048364 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.132 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.10690 -39.78254 -38.22625 -37.55922 -35.41032 -34.41181 -33.67704 -33.52921 -32.09143 -31.37189 -28.06155 -27.18078 -26.20760 -24.37460 -23.58428 -21.67594 -20.81879 -19.61109 -19.10755 -18.51457 -18.00279 -17.54600 -16.45792 -16.24414 -15.64250 -15.55675 -14.96313 -14.76750 -14.52175 -14.32568 -14.23214 -14.09972 -13.79994 -13.57819 -13.46369 -13.07823 -12.92124 -12.76428 -12.19665 -12.10042 -11.96901 -11.84204 -11.63806 -11.11293 -10.51668 -10.36506 -10.31058 -10.00630 -9.81373 -9.63652 -9.25424 -9.07953 -8.65379 -8.64087 -8.11076 -6.52137 -3.94327 0.47234 0.74913 2.74080 3.12942 3.13222 3.20992 3.24950 3.35156 3.41216 3.74032 4.07226 4.09067 4.27675 4.40358 4.43329 4.51534 4.71380 4.88590 4.95337 5.11847 5.15052 5.16530 5.31643 5.46292 5.57467 5.71600 5.76716 5.90036 5.99187 6.06641 6.08120 6.36293 6.71249 6.99238 7.14119 7.44919 7.50902 7.91171 8.16827 8.44137 8.73639 9.03621 9.38494 9.86305 10.64609 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.028497 B = 0.002189 C = 0.002164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.309952 B =12789.206705 C =12937.109890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.151 4.151 3 C 0.127 3.873 4 N -0.501 5.501 5 C 0.322 3.678 6 O -0.476 6.476 7 C -0.167 4.167 8 C 0.191 3.809 9 N -0.747 5.747 10 C 0.706 3.294 11 O -0.595 6.595 12 N -0.723 5.723 13 C 0.128 3.872 14 C 0.428 3.572 15 O -0.599 6.599 16 N -0.549 5.549 17 C -0.306 4.306 18 H 0.105 0.895 19 C 0.026 3.974 20 N -0.894 5.894 21 Si 0.934 3.066 22 H -0.272 1.272 23 H -0.283 1.283 24 H -0.273 1.273 25 C -0.043 4.043 26 H 0.075 0.925 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.161 0.839 30 H 0.403 0.597 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.394 0.606 34 H 0.406 0.594 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.396 0.604 38 H 0.275 0.725 39 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.545 14.010 11.847 24.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.153 4.153 3 C -0.030 4.030 4 N -0.218 5.218 5 C 0.143 3.857 6 O -0.283 6.283 7 C -0.171 4.171 8 C 0.067 3.933 9 N -0.403 5.403 10 C 0.406 3.594 11 O -0.473 6.473 12 N -0.381 5.381 13 C 0.000 4.000 14 C 0.214 3.786 15 O -0.486 6.486 16 N -0.183 5.183 17 C -0.435 4.435 18 H 0.122 0.878 19 C -0.177 4.177 20 N -0.534 5.534 21 Si 0.761 3.239 22 H -0.198 1.198 23 H -0.209 1.209 24 H -0.198 1.198 25 C -0.069 4.069 26 H 0.093 0.907 27 H 0.089 0.911 28 H 0.090 0.910 29 H 0.178 0.822 30 H 0.261 0.739 31 H 0.095 0.905 32 H 0.102 0.898 33 H 0.227 0.773 34 H 0.244 0.756 35 H 0.101 0.899 36 H 0.100 0.900 37 H 0.230 0.770 38 H 0.085 0.915 39 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -15.941 14.407 12.734 24.977 hybrid contribution 0.058 -0.661 -1.642 1.771 sum -15.884 13.746 11.091 23.754 Atomic orbital electron populations 1.20715 0.89651 1.03378 1.02889 1.20971 0.98019 0.93843 1.02441 1.22494 0.88252 0.97850 0.94411 1.67237 1.08986 1.31656 1.13940 1.19059 0.84699 0.87265 0.94684 1.84765 1.13845 1.95662 1.34064 1.20986 0.94797 0.95622 1.05659 1.19797 0.96526 0.92400 0.84596 1.45027 1.55833 1.26543 1.12935 1.15803 0.78833 0.81660 0.83114 1.90921 1.65160 1.46735 1.44496 1.44762 1.54400 1.28073 1.10833 1.20793 0.95246 0.87983 0.95970 1.19757 0.84882 0.85291 0.88694 1.90486 1.61241 1.38123 1.58734 1.41783 1.43107 1.21607 1.11830 1.19671 1.28550 1.08965 0.86337 0.87752 1.25329 0.96801 0.95188 1.00403 1.69606 1.36002 1.11464 1.36348 0.85870 0.78743 0.77731 0.81592 1.19775 1.20850 1.19794 1.21442 0.92460 0.98826 0.94210 0.90661 0.91066 0.90994 0.82227 0.73898 0.90524 0.89770 0.77298 0.75643 0.89936 0.89990 0.76990 0.91517 0.83962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.42 10.03 36.01 0.36 -0.06 16 2 C -0.15 -0.99 5.90 -104.47 -0.62 -1.61 16 3 C 0.13 0.98 10.85 -17.56 -0.19 0.79 16 4 N -0.50 -5.26 10.39 -13.33 -0.14 -5.40 16 5 C 0.32 3.31 7.72 -17.12 -0.13 3.18 16 6 O -0.48 -4.86 12.91 -18.73 -0.24 -5.10 16 7 C -0.17 -1.50 5.28 -104.32 -0.55 -2.05 16 8 C 0.19 1.97 5.43 -5.19 -0.03 1.95 16 9 N -0.75 -8.38 5.55 -66.42 -0.37 -8.74 16 10 C 0.71 10.99 8.57 -86.91 -0.74 10.25 16 11 O -0.59 -11.35 16.34 5.29 0.09 -11.26 16 12 N -0.72 -11.72 5.53 -66.41 -0.37 -12.09 16 13 C 0.13 2.35 6.15 -5.19 -0.03 2.32 16 14 C 0.43 9.69 7.85 -10.98 -0.09 9.61 16 15 O -0.60 -15.08 15.24 5.55 0.08 -14.99 16 16 N -0.55 -13.50 5.29 -10.96 -0.06 -13.56 16 17 C -0.31 -8.25 9.68 -14.93 -0.14 -8.40 16 18 H 0.10 2.92 7.16 -52.49 -0.38 2.55 16 19 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 20 N -0.89 -23.76 13.05 55.50 0.72 -23.04 16 21 Si 0.93 20.43 29.55 -169.99 -5.02 15.40 16 22 H -0.27 -5.92 7.11 56.52 0.40 -5.51 16 23 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 24 H -0.27 -5.92 7.11 56.52 0.40 -5.51 16 25 C -0.04 -0.32 9.49 -39.31 -0.37 -0.69 16 26 H 0.07 0.26 8.14 -51.93 -0.42 -0.17 16 27 H 0.07 0.24 8.10 -51.93 -0.42 -0.18 16 28 H 0.07 0.20 8.09 -51.93 -0.42 -0.22 16 29 H 0.16 0.80 8.06 -52.49 -0.42 0.37 16 30 H 0.40 2.66 9.06 45.56 0.41 3.07 16 31 H 0.08 0.78 8.00 -51.93 -0.42 0.37 16 32 H 0.08 0.99 8.02 -51.93 -0.42 0.57 16 33 H 0.39 3.58 8.48 -40.82 -0.35 3.23 16 34 H 0.41 6.36 7.45 -40.82 -0.30 6.05 16 35 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 36 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 37 H 0.40 9.39 7.90 -40.82 -0.32 9.06 16 38 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 39 H 0.14 0.79 8.05 -52.49 -0.42 0.37 16 LS Contribution 348.72 15.07 5.26 5.26 Total: -1.00 -34.12 348.72 -6.54 -40.65 By element: Atomic # 1 Polarization: 20.89 SS G_CDS: -3.86 Total: 17.03 kcal Atomic # 6 Polarization: 18.48 SS G_CDS: -2.63 Total: 15.85 kcal Atomic # 7 Polarization: -62.63 SS G_CDS: -0.21 Total: -62.83 kcal Atomic # 8 Polarization: -31.29 SS G_CDS: -0.07 Total: -31.36 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -34.12 -6.54 -40.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001682186567.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.156 kcal (2) G-P(sol) polarization free energy of solvation -34.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds