Wall clock time and date at job start Fri Apr 10 2020 14:30:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42899 * 113.99988 * 2 1 4 4 C 1.52995 * 113.28178 * 313.06604 * 3 2 1 5 5 C 1.53504 * 114.20308 * 180.02562 * 3 2 1 6 6 N 1.47072 * 87.98263 * 220.34491 * 5 3 2 7 7 C 1.34771 * 136.05593 * 207.08569 * 6 5 3 8 8 O 1.21362 * 120.00251 * 0.02562 * 7 6 5 9 9 C 1.49309 * 119.99919 * 180.02562 * 7 6 5 10 10 O 1.21401 * 120.00056 * 359.97438 * 9 7 6 11 11 N 1.34780 * 120.00085 * 180.02562 * 9 7 6 12 12 C 1.40289 * 120.00003 * 179.97438 * 11 9 7 13 13 C 1.40718 * 126.10055 * 0.02662 * 12 11 9 14 14 N 1.30882 * 108.37601 * 179.97438 * 13 12 11 15 15 N 1.40056 * 108.43314 * 0.02562 * 14 13 12 16 16 C 1.37295 * 126.04990 * 179.97438 * 15 14 13 17 17 H 1.08002 * 119.99840 * 174.12208 * 16 15 14 18 18 C 1.39005 * 120.00354 * 354.12355 * 16 15 14 19 19 N 1.31281 * 120.00144 * 5.93754 * 18 16 15 20 20 Si 1.86797 * 120.00119 * 185.93119 * 18 16 15 21 21 H 1.48502 * 109.47230 * 94.98174 * 20 18 16 22 22 H 1.48495 * 109.47644 * 214.97946 * 20 18 16 23 23 H 1.48502 * 109.47405 * 334.98652 * 20 18 16 24 24 C 1.35790 * 126.09915 * 179.97438 * 12 11 9 25 25 C 1.47069 * 87.88390 * 27.34251 * 6 5 3 26 26 H 1.08998 * 109.46934 * 59.99404 * 1 2 3 27 27 H 1.09000 * 109.46910 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46537 * 299.99877 * 1 2 3 29 29 H 1.09000 * 109.47781 * 286.93276 * 4 3 2 30 30 H 1.09003 * 109.47210 * 46.94106 * 4 3 2 31 31 H 1.09003 * 109.46977 * 166.93122 * 4 3 2 32 32 H 1.09004 * 113.46478 * 105.56576 * 5 3 2 33 33 H 1.08994 * 113.46475 * 335.12649 * 5 3 2 34 34 H 0.96999 * 119.99424 * 359.97438 * 11 9 7 35 35 H 1.08008 * 125.81510 * 359.71675 * 13 12 11 36 36 H 0.96995 * 120.00257 * 180.02562 * 19 18 16 37 37 H 1.07998 * 126.25245 * 0.02562 * 24 12 11 38 38 H 1.08995 * 113.46977 * 87.43831 * 25 6 5 39 39 H 1.09003 * 113.46839 * 217.87884 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.3795 2.2482 -1.0267 5 6 3.5453 1.3109 -0.0006 6 7 3.4899 2.4308 0.9511 7 6 4.2844 3.4707 1.2732 8 8 5.3417 3.6274 0.6985 9 6 3.8637 4.4300 2.3372 10 8 2.8058 4.2735 2.9119 11 7 4.6580 5.4703 2.6590 12 6 4.2624 6.3719 3.6584 13 6 3.0702 6.3130 4.4035 14 7 3.0549 7.3214 5.2378 15 7 4.2305 8.0615 5.0597 16 6 4.5842 9.1946 5.7495 17 1 5.5587 9.6356 5.6001 18 6 3.6882 9.7743 6.6402 19 7 2.5511 9.1762 6.9100 20 14 4.1021 11.4042 7.4534 21 1 3.4976 12.5141 6.6736 22 1 3.5611 11.4191 8.8363 23 1 5.5765 11.5756 7.4968 24 6 4.9623 7.4566 4.0799 25 6 2.1892 1.9127 1.4012 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3632 0.5138 0.8901 29 1 1.7002 1.9618 -2.0283 30 1 0.2935 2.1835 -0.9604 31 1 1.6955 3.2713 -0.8228 32 1 3.9780 1.5809 -0.9640 33 1 3.9827 0.4053 0.4196 34 1 5.5030 5.5954 2.1996 35 1 2.2972 5.5657 4.3013 36 1 1.9257 9.5809 7.5312 37 1 5.9224 7.7814 3.7071 38 1 2.2691 1.1657 2.1909 39 1 1.4665 2.6953 1.6321 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000784860492.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:30:22 Heat of formation + Delta-G solvation = 28.453699 kcal Electronic energy + Delta-G solvation = -24852.027048 eV Core-core repulsion = 20992.456486 eV Total energy + Delta-G solvation = -3859.570562 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.132 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.15968 -40.01779 -39.05492 -37.78448 -36.67337 -34.37116 -33.20889 -30.87699 -30.34244 -28.49180 -27.96583 -26.80448 -26.36911 -25.14698 -23.34782 -21.07849 -20.51301 -19.53919 -19.13085 -17.89175 -17.56095 -17.13887 -16.61438 -15.75426 -15.56693 -15.52252 -15.40560 -15.09733 -14.54497 -14.19173 -13.88880 -13.72969 -13.53925 -13.22941 -13.04912 -12.97925 -12.59448 -12.37420 -12.09667 -11.79786 -11.73871 -11.55233 -11.32767 -11.21107 -10.89005 -10.82713 -10.56186 -10.30924 -9.97088 -9.25344 -9.11527 -9.00182 -8.89600 -8.15028 -6.80349 -6.62944 -4.29868 1.60232 2.19886 2.91478 3.02480 3.07845 3.24135 3.38743 3.55448 3.69122 3.80705 3.95594 4.29299 4.34571 4.50501 4.64751 4.94244 4.95335 5.00236 5.09130 5.13467 5.22131 5.27801 5.32893 5.42008 5.45913 5.53833 5.62708 5.76617 6.18140 6.33830 6.74078 6.79346 6.87158 6.91125 7.14162 7.32859 7.61522 7.80050 8.07367 8.15739 8.46269 8.67062 9.29214 9.57462 10.33154 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.032327 B = 0.002670 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.932859 B =10482.802758 C =11103.848655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.365 6.365 3 C 0.068 3.932 4 C -0.157 4.157 5 C 0.122 3.878 6 N -0.619 5.619 7 C 0.548 3.452 8 O -0.525 6.525 9 C 0.489 3.511 10 O -0.518 6.518 11 N -0.583 5.583 12 C -0.069 4.069 13 C -0.026 4.026 14 N -0.261 5.261 15 N -0.138 5.138 16 C -0.322 4.322 17 H 0.118 0.882 18 C 0.047 3.953 19 N -0.767 5.767 20 Si 0.936 3.064 21 H -0.270 1.270 22 H -0.275 1.275 23 H -0.263 1.263 24 C -0.076 4.076 25 C 0.088 3.912 26 H 0.048 0.952 27 H 0.088 0.912 28 H 0.047 0.953 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.089 0.911 33 H 0.098 0.902 34 H 0.409 0.591 35 H 0.177 0.823 36 H 0.276 0.724 37 H 0.149 0.851 38 H 0.096 0.904 39 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.218 -13.170 -12.666 18.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.283 6.283 3 C 0.028 3.972 4 C -0.214 4.214 5 C -0.001 4.001 6 N -0.356 5.356 7 C 0.333 3.667 8 O -0.401 6.401 9 C 0.270 3.730 10 O -0.395 6.395 11 N -0.226 5.226 12 C -0.174 4.174 13 C -0.202 4.202 14 N -0.092 5.092 15 N 0.095 4.905 16 C -0.455 4.455 17 H 0.136 0.864 18 C -0.171 4.171 19 N -0.393 5.393 20 Si 0.760 3.240 21 H -0.196 1.196 22 H -0.200 1.200 23 H -0.187 1.187 24 C -0.228 4.228 25 C -0.036 4.036 26 H 0.067 0.933 27 H 0.106 0.894 28 H 0.066 0.934 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.095 0.905 32 H 0.108 0.892 33 H 0.116 0.884 34 H 0.244 0.756 35 H 0.194 0.806 36 H 0.086 0.914 37 H 0.167 0.833 38 H 0.114 0.886 39 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -3.008 -12.544 -11.432 17.236 hybrid contribution 0.977 0.474 -0.470 1.183 sum -2.030 -12.070 -11.901 17.072 Atomic orbital electron populations 1.22840 0.80576 1.02963 1.00720 1.87933 1.20298 1.25348 1.94740 1.23201 0.93917 0.84550 0.95562 1.21992 1.01529 0.99549 0.98366 1.23068 0.93481 0.89262 0.94249 1.48751 1.22549 1.24545 1.39763 1.19837 0.82693 0.80816 0.83333 1.90747 1.22186 1.73884 1.53270 1.19446 0.85644 0.82968 0.84980 1.90635 1.22749 1.73388 1.52701 1.42128 1.21675 1.23495 1.35322 1.17240 1.00245 0.97789 1.02175 1.24132 0.97946 1.00333 0.97792 1.78256 1.03291 1.05347 1.22298 1.44561 1.10835 1.15709 1.19389 1.19935 1.02701 1.00500 1.22325 0.86407 1.25670 0.94965 0.99790 0.96668 1.70210 1.06624 1.35604 1.26883 0.85786 0.79451 0.80231 0.78559 1.19577 1.20050 1.18704 1.21311 1.00904 0.99360 1.01220 1.23815 0.84483 0.98357 0.96906 0.93306 0.89371 0.93426 0.90941 0.90913 0.90536 0.89249 0.88380 0.75584 0.80603 0.91356 0.83305 0.88591 0.88461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 10.36 101.05 1.05 1.21 16 2 O -0.37 -3.31 10.71 -35.23 -0.38 -3.69 16 3 C 0.07 0.63 1.56 -89.97 -0.14 0.49 16 4 C -0.16 -1.27 8.96 37.16 0.33 -0.94 16 5 C 0.12 1.23 8.04 -8.49 -0.07 1.16 16 6 N -0.62 -8.19 3.50 -185.58 -0.65 -8.84 16 7 C 0.55 8.89 8.13 -11.65 -0.09 8.79 16 8 O -0.53 -9.21 17.25 5.49 0.09 -9.12 16 9 C 0.49 9.07 7.85 -11.65 -0.09 8.98 16 10 O -0.52 -10.49 12.33 5.45 0.07 -10.42 16 11 N -0.58 -11.16 5.45 -10.46 -0.06 -11.22 16 12 C -0.07 -1.59 6.90 -83.93 -0.58 -2.17 16 13 C -0.03 -0.68 10.84 -17.02 -0.18 -0.86 16 14 N -0.26 -7.47 10.41 30.81 0.32 -7.14 16 15 N -0.14 -3.75 3.73 -11.40 -0.04 -3.79 16 16 C -0.32 -8.41 10.24 -14.82 -0.15 -8.56 16 17 H 0.12 2.75 7.84 -52.49 -0.41 2.33 16 18 C 0.05 1.19 5.50 -17.50 -0.10 1.09 16 19 N -0.77 -21.05 11.84 55.50 0.66 -20.39 16 20 Si 0.94 18.63 29.56 -169.99 -5.02 13.61 16 21 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 22 H -0.28 -5.43 7.11 56.52 0.40 -5.03 16 23 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 24 C -0.08 -1.80 11.50 -16.38 -0.19 -1.99 16 25 C 0.09 0.99 7.03 -8.36 -0.06 0.93 16 26 H 0.05 0.27 6.36 -51.93 -0.33 -0.06 16 27 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.49 6.12 -51.93 -0.32 0.18 16 31 H 0.08 0.73 7.94 -51.93 -0.41 0.32 16 32 H 0.09 0.84 8.12 -51.93 -0.42 0.41 16 33 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.41 6.78 8.29 -40.82 -0.34 6.44 16 35 H 0.18 4.40 5.92 -52.48 -0.31 4.09 16 36 H 0.28 6.90 8.31 -40.82 -0.34 6.56 16 37 H 0.15 2.93 8.06 -52.49 -0.42 2.51 16 38 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.10 1.19 7.36 -51.93 -0.38 0.81 16 LS Contribution 338.01 15.07 5.09 5.09 Total: -1.00 -32.89 338.01 -4.78 -37.67 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: -4.60 Total: 10.09 kcal Atomic # 6 Polarization: 8.42 SS G_CDS: -0.27 Total: 8.15 kcal Atomic # 7 Polarization: -51.62 SS G_CDS: 0.23 Total: -51.39 kcal Atomic # 8 Polarization: -23.01 SS G_CDS: -0.22 Total: -23.22 kcal Atomic # 14 Polarization: 18.63 SS G_CDS: -5.02 Total: 13.61 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.89 -4.78 -37.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784860492.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.125 kcal (2) G-P(sol) polarization free energy of solvation -32.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.671 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds