Wall clock time and date at job start Fri Apr 10 2020 14:30:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42899 * 113.99988 * 2 1 4 4 C 1.52995 * 113.28178 * 313.06604 * 3 2 1 5 5 C 1.53504 * 114.20308 * 180.02562 * 3 2 1 6 6 N 1.47072 * 87.98263 * 220.34491 * 5 3 2 7 7 C 1.34771 * 136.05593 * 207.08569 * 6 5 3 8 8 O 1.21362 * 120.00251 * 0.02562 * 7 6 5 9 9 C 1.49309 * 119.99919 * 180.02562 * 7 6 5 10 10 O 1.21401 * 120.00056 * 359.97438 * 9 7 6 11 11 N 1.34780 * 120.00085 * 180.02562 * 9 7 6 12 12 C 1.40289 * 120.00003 * 179.97438 * 11 9 7 13 13 C 1.40718 * 126.10055 * 0.02662 * 12 11 9 14 14 N 1.30882 * 108.37601 * 179.97438 * 13 12 11 15 15 N 1.40056 * 108.43314 * 0.02562 * 14 13 12 16 16 C 1.37295 * 126.04990 * 179.97438 * 15 14 13 17 17 H 1.08002 * 119.99840 * 174.12208 * 16 15 14 18 18 C 1.39005 * 120.00354 * 354.12355 * 16 15 14 19 19 N 1.31281 * 120.00144 * 5.93754 * 18 16 15 20 20 Si 1.86797 * 120.00119 * 185.93119 * 18 16 15 21 21 H 1.48502 * 109.47230 * 94.98174 * 20 18 16 22 22 H 1.48495 * 109.47644 * 214.97946 * 20 18 16 23 23 H 1.48502 * 109.47405 * 334.98652 * 20 18 16 24 24 C 1.35790 * 126.09915 * 179.97438 * 12 11 9 25 25 C 1.47069 * 87.88390 * 27.34251 * 6 5 3 26 26 H 1.08998 * 109.46934 * 59.99404 * 1 2 3 27 27 H 1.09000 * 109.46910 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46537 * 299.99877 * 1 2 3 29 29 H 1.09000 * 109.47781 * 286.93276 * 4 3 2 30 30 H 1.09003 * 109.47210 * 46.94106 * 4 3 2 31 31 H 1.09003 * 109.46977 * 166.93122 * 4 3 2 32 32 H 1.09004 * 113.46478 * 105.56576 * 5 3 2 33 33 H 1.08994 * 113.46475 * 335.12649 * 5 3 2 34 34 H 0.96999 * 119.99424 * 359.97438 * 11 9 7 35 35 H 1.08008 * 125.81510 * 359.71675 * 13 12 11 36 36 H 0.96995 * 120.00257 * 180.02562 * 19 18 16 37 37 H 1.07998 * 126.25245 * 0.02562 * 24 12 11 38 38 H 1.08995 * 113.46977 * 87.43831 * 25 6 5 39 39 H 1.09003 * 113.46839 * 217.87884 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.3795 2.2482 -1.0267 5 6 3.5453 1.3109 -0.0006 6 7 3.4899 2.4308 0.9511 7 6 4.2844 3.4707 1.2732 8 8 5.3417 3.6274 0.6985 9 6 3.8637 4.4300 2.3372 10 8 2.8058 4.2735 2.9119 11 7 4.6580 5.4703 2.6590 12 6 4.2624 6.3719 3.6584 13 6 3.0702 6.3130 4.4035 14 7 3.0549 7.3214 5.2378 15 7 4.2305 8.0615 5.0597 16 6 4.5842 9.1946 5.7495 17 1 5.5587 9.6356 5.6001 18 6 3.6882 9.7743 6.6402 19 7 2.5511 9.1762 6.9100 20 14 4.1021 11.4042 7.4534 21 1 3.4976 12.5141 6.6736 22 1 3.5611 11.4191 8.8363 23 1 5.5765 11.5756 7.4968 24 6 4.9623 7.4566 4.0799 25 6 2.1892 1.9127 1.4012 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3632 0.5138 0.8901 29 1 1.7002 1.9618 -2.0283 30 1 0.2935 2.1835 -0.9604 31 1 1.6955 3.2713 -0.8228 32 1 3.9780 1.5809 -0.9640 33 1 3.9827 0.4053 0.4196 34 1 5.5030 5.5954 2.1996 35 1 2.2972 5.5657 4.3013 36 1 1.9257 9.5809 7.5312 37 1 5.9224 7.7814 3.7071 38 1 2.2691 1.1657 2.1909 39 1 1.4665 2.6953 1.6321 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000784860492.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:30:21 Heat of formation + Delta-G solvation = 3.797818 kcal Electronic energy + Delta-G solvation = -24853.096207 eV Core-core repulsion = 20992.456486 eV Total energy + Delta-G solvation = -3860.639721 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.132 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.29874 -41.64959 -40.49440 -39.16925 -37.53792 -36.07354 -35.02541 -32.31837 -31.78256 -29.96144 -29.12528 -27.62935 -27.34589 -26.83327 -24.77089 -22.92032 -21.72367 -21.27061 -20.30577 -19.42560 -18.91993 -18.24543 -17.78907 -17.46257 -16.88441 -16.70686 -16.56242 -16.22859 -15.88602 -15.54239 -15.47744 -14.99762 -14.88206 -14.44237 -14.40232 -14.28895 -13.53320 -13.40588 -13.32567 -13.08129 -13.04539 -12.90771 -12.81544 -12.56239 -12.25492 -12.07365 -11.99366 -11.55431 -11.09294 -10.89833 -10.81706 -10.45748 -10.15788 -10.04932 -8.64742 -8.50631 -6.28047 0.20297 0.99031 1.27714 1.40804 1.58624 1.69955 1.98040 2.07098 2.29476 2.48375 2.67563 2.78664 3.05473 3.14715 3.37146 3.55930 3.88041 4.18123 4.37806 4.43074 4.45813 4.50362 4.52130 4.57558 4.64313 4.68366 4.74356 4.79189 4.93426 4.94547 4.97080 5.15511 5.19532 5.28316 5.89732 6.11402 6.13780 6.18735 6.31536 6.61317 6.70372 7.02451 7.39669 7.60774 8.48887 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.032327 B = 0.002670 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.932859 B =10482.802758 C =11103.848655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.374 6.374 3 C 0.086 3.914 4 C -0.156 4.156 5 C 0.119 3.881 6 N -0.617 5.617 7 C 0.554 3.446 8 O -0.540 6.540 9 C 0.490 3.510 10 O -0.536 6.536 11 N -0.582 5.582 12 C -0.056 4.056 13 C -0.047 4.047 14 N -0.308 5.308 15 N -0.163 5.163 16 C -0.353 4.353 17 H 0.142 0.858 18 C -0.004 4.004 19 N -0.820 5.820 20 Si 1.020 2.980 21 H -0.266 1.266 22 H -0.275 1.275 23 H -0.244 1.244 24 C -0.074 4.074 25 C 0.080 3.920 26 H 0.061 0.939 27 H 0.104 0.896 28 H 0.046 0.954 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.059 0.941 32 H 0.101 0.899 33 H 0.112 0.888 34 H 0.423 0.577 35 H 0.175 0.825 36 H 0.278 0.722 37 H 0.188 0.812 38 H 0.102 0.898 39 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.309 -13.618 -14.072 19.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.292 6.292 3 C 0.045 3.955 4 C -0.213 4.213 5 C -0.002 4.002 6 N -0.353 5.353 7 C 0.338 3.662 8 O -0.418 6.418 9 C 0.272 3.728 10 O -0.413 6.413 11 N -0.227 5.227 12 C -0.162 4.162 13 C -0.222 4.222 14 N -0.140 5.140 15 N 0.070 4.930 16 C -0.485 4.485 17 H 0.159 0.841 18 C -0.217 4.217 19 N -0.447 5.447 20 Si 0.838 3.162 21 H -0.191 1.191 22 H -0.200 1.200 23 H -0.167 1.167 24 C -0.225 4.225 25 C -0.043 4.043 26 H 0.080 0.920 27 H 0.122 0.878 28 H 0.065 0.935 29 H 0.106 0.894 30 H 0.104 0.896 31 H 0.078 0.922 32 H 0.120 0.880 33 H 0.130 0.870 34 H 0.261 0.739 35 H 0.192 0.808 36 H 0.088 0.912 37 H 0.205 0.795 38 H 0.120 0.880 39 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -2.099 -13.049 -12.880 18.455 hybrid contribution 0.623 0.392 -0.149 0.751 sum -1.476 -12.658 -13.029 18.225 Atomic orbital electron populations 1.23058 0.79159 1.04301 1.01331 1.87925 1.21814 1.24729 1.94684 1.22987 0.93538 0.84935 0.94071 1.22007 1.02419 0.98190 0.98723 1.23332 0.94447 0.88331 0.94053 1.48818 1.22530 1.24141 1.39842 1.19154 0.82899 0.81316 0.82866 1.90741 1.22780 1.74525 1.53765 1.20032 0.85006 0.82826 0.84957 1.90626 1.23565 1.73777 1.53357 1.42060 1.22542 1.23251 1.34848 1.17275 0.98991 0.97973 1.01999 1.24229 0.99200 1.00234 0.98572 1.78153 1.05152 1.06673 1.23987 1.44841 1.11007 1.16459 1.20740 1.20662 1.04094 1.00691 1.23008 0.84108 1.26885 0.94364 1.03626 0.96777 1.70373 1.08221 1.37902 1.28235 0.84566 0.80131 0.74534 0.76927 1.19137 1.20035 1.16653 1.22002 1.01803 0.98717 0.99982 1.24021 0.83307 0.98170 0.98821 0.92029 0.87778 0.93492 0.89391 0.89555 0.92183 0.88038 0.86957 0.73936 0.80785 0.91202 0.79465 0.87981 0.89713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 10.36 113.37 1.17 1.36 16 2 O -0.37 -5.87 10.71 -148.98 -1.60 -7.46 16 3 C 0.09 1.42 1.56 -10.37 -0.02 1.40 16 4 C -0.16 -2.21 8.96 71.98 0.65 -1.57 16 5 C 0.12 2.15 8.04 83.18 0.67 2.82 16 6 N -0.62 -15.59 3.50 -859.89 -3.01 -18.60 16 7 C 0.55 17.46 8.13 87.23 0.71 18.17 16 8 O -0.54 -18.26 17.25 -3.28 -0.06 -18.31 16 9 C 0.49 18.10 7.85 87.23 0.69 18.79 16 10 O -0.54 -22.00 12.33 -3.41 -0.04 -22.04 16 11 N -0.58 -21.97 5.45 -305.33 -1.66 -23.63 16 12 C -0.06 -2.61 6.90 37.82 0.26 -2.34 16 13 C -0.05 -2.50 10.84 85.44 0.93 -1.57 16 14 N -0.31 -18.25 10.41 -56.43 -0.59 -18.84 16 15 N -0.16 -8.95 3.73 -189.98 -0.71 -9.66 16 16 C -0.35 -18.50 10.24 84.02 0.86 -17.64 16 17 H 0.14 6.40 7.84 -2.91 -0.02 6.38 16 18 C 0.00 -0.22 5.50 84.96 0.47 0.25 16 19 N -0.82 -46.45 11.84 21.66 0.26 -46.19 16 20 Si 1.02 37.99 29.56 68.60 2.03 40.02 16 21 H -0.27 -9.66 7.11 99.48 0.71 -8.95 16 22 H -0.28 -10.12 7.11 99.48 0.71 -9.41 16 23 H -0.24 -8.21 7.11 99.48 0.71 -7.51 16 24 C -0.07 -3.45 11.50 83.41 0.96 -2.49 16 25 C 0.08 1.72 7.03 83.27 0.58 2.31 16 26 H 0.06 0.51 6.36 -2.39 -0.02 0.49 16 27 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.09 0.98 6.12 -2.39 -0.01 0.97 16 31 H 0.06 1.07 7.94 -2.39 -0.02 1.05 16 32 H 0.10 1.63 8.12 -2.38 -0.02 1.61 16 33 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.42 13.51 8.29 -92.71 -0.77 12.74 16 35 H 0.18 9.10 5.92 -2.91 -0.02 9.08 16 36 H 0.28 14.43 8.31 -92.71 -0.77 13.66 16 37 H 0.19 6.98 8.06 -2.91 -0.02 6.96 16 38 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 39 H 0.08 2.07 7.36 -2.39 -0.02 2.05 16 Total: -1.00 -72.97 338.01 2.88 -70.09 By element: Atomic # 1 Polarization: 34.83 SS G_CDS: 0.34 Total: 35.16 kcal Atomic # 6 Polarization: 11.55 SS G_CDS: 7.93 Total: 19.47 kcal Atomic # 7 Polarization: -111.21 SS G_CDS: -5.71 Total: -116.92 kcal Atomic # 8 Polarization: -46.13 SS G_CDS: -1.69 Total: -47.82 kcal Atomic # 14 Polarization: 37.99 SS G_CDS: 2.03 Total: 40.02 kcal Total: -72.97 2.88 -70.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784860492.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.886 kcal (2) G-P(sol) polarization free energy of solvation -72.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.088 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds