Wall clock time and date at job start Fri Apr 10 2020 14:29:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35237 * 126.69251 * 2 1 4 4 C 1.42056 * 103.95865 * 179.97438 * 3 2 1 5 5 N 1.39355 * 126.90104 * 179.97438 * 4 3 2 6 6 C 1.34773 * 119.99852 * 0.02562 * 5 4 3 7 7 O 1.21355 * 120.00186 * 359.72624 * 6 5 4 8 8 C 1.49386 * 120.00002 * 179.97438 * 6 5 4 9 9 O 1.21355 * 119.99755 * 359.72867 * 8 6 5 10 10 N 1.34777 * 120.00031 * 179.73002 * 8 6 5 11 11 C 1.47021 * 125.64901 * 0.02562 * 10 8 6 12 12 C 1.54325 * 107.26976 * 181.02837 * 11 10 8 13 13 C 1.55151 * 102.94312 * 22.19419 * 12 11 10 14 14 H 1.08996 * 111.00612 * 82.60873 * 13 12 11 15 15 N 1.46502 * 111.00447 * 206.42645 * 13 12 11 16 16 C 1.36940 * 119.99922 * 205.00256 * 15 13 12 17 17 H 1.07995 * 119.99937 * 359.97438 * 16 15 13 18 18 C 1.38810 * 119.99863 * 180.02562 * 16 15 13 19 19 N 1.31622 * 120.00010 * 180.02562 * 18 16 15 20 20 Si 1.86803 * 120.00142 * 359.97438 * 18 16 15 21 21 H 1.48506 * 109.46799 * 90.00420 * 20 18 16 22 22 H 1.48496 * 109.47164 * 210.00349 * 20 18 16 23 23 H 1.48498 * 109.46818 * 330.00521 * 20 18 16 24 24 C 1.47427 * 125.64553 * 179.72164 * 10 8 6 25 25 N 1.30756 * 106.19956 * 0.24425 * 4 3 2 26 26 O 1.20918 * 111.46736 * 359.56839 * 25 4 3 27 27 H 1.09002 * 109.46245 * 90.00262 * 1 2 3 28 28 H 1.08999 * 109.47283 * 210.00034 * 1 2 3 29 29 H 1.08997 * 109.46846 * 330.00343 * 1 2 3 30 30 H 1.07999 * 128.02334 * 359.97438 * 3 2 1 31 31 H 0.97004 * 120.00130 * 180.02562 * 5 4 3 32 32 H 1.08998 * 109.88454 * 300.44923 * 11 10 8 33 33 H 1.09003 * 109.88170 * 61.45444 * 11 10 8 34 34 H 1.09000 * 110.71816 * 140.55971 * 12 11 10 35 35 H 1.09007 * 110.71703 * 263.83277 * 12 11 10 36 36 H 0.96999 * 120.00067 * 24.99985 * 15 13 12 37 37 H 0.96996 * 119.99924 * 179.97438 * 19 18 16 38 38 H 1.09003 * 110.36265 * 274.74173 * 24 10 8 39 39 H 1.09001 * 110.36901 * 37.06095 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3151 1.0844 0.0000 4 6 3.6253 0.5354 0.0006 5 7 4.8277 1.2399 0.0004 6 6 4.8190 2.5876 0.0000 7 8 3.7643 3.1876 -0.0052 8 6 6.1080 3.3428 0.0003 9 8 7.1628 2.7427 0.0059 10 7 6.0994 4.6905 -0.0056 11 6 4.8992 5.5397 -0.0121 12 6 5.3764 7.0070 -0.0439 13 6 6.8106 6.8935 -0.6245 14 1 6.7881 6.8352 -1.7127 15 7 7.6476 8.0101 -0.1785 16 6 8.7261 8.3992 -0.9273 17 1 8.9599 7.8826 -1.8464 18 6 9.5194 9.4568 -0.5044 19 7 10.5558 9.8311 -1.2244 20 14 9.1154 10.3499 1.0858 21 1 9.8217 9.6935 2.2153 22 1 9.5533 11.7651 0.9837 23 1 7.6503 10.3008 1.3225 24 6 7.2919 5.5573 -0.0003 25 7 3.4765 -0.7636 -0.0044 26 8 2.3082 -1.0752 0.0005 27 1 -0.3632 0.0000 -1.0277 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5138 30 1 2.0304 2.1262 -0.0004 31 1 5.6708 0.7602 0.0005 32 1 4.2986 5.3260 -0.8962 33 1 4.3116 5.3579 0.8877 34 1 4.7417 7.6048 -0.6979 35 1 5.3996 7.4268 0.9619 36 1 7.4378 8.4739 0.6472 37 1 11.1099 10.5704 -0.9291 38 1 7.6405 5.7164 1.0202 39 1 8.0829 5.1181 -0.6082 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970698040.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:29:30 Heat of formation + Delta-G solvation = 30.133244 kcal Electronic energy + Delta-G solvation = -24689.687696 eV Core-core repulsion = 20830.189964 eV Total energy + Delta-G solvation = -3859.497732 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.132 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -45.22165 -41.10409 -39.17610 -37.65853 -36.09966 -34.35869 -33.98197 -32.33258 -31.78032 -30.10425 -28.36011 -28.17227 -26.01665 -24.11990 -23.13612 -22.43421 -21.27929 -20.56268 -19.93294 -18.18576 -18.04112 -17.83820 -17.39312 -17.09382 -16.54675 -16.37384 -15.56084 -15.08856 -14.43738 -14.20572 -13.98502 -13.91994 -13.88011 -13.67689 -13.33186 -12.94796 -12.81339 -12.70671 -12.58347 -12.14425 -12.04826 -11.67028 -11.58852 -11.34424 -10.98774 -10.83244 -10.54736 -10.16797 -9.84264 -9.77776 -9.70929 -9.25924 -9.13163 -8.70152 -7.47353 -5.89183 -3.28343 0.80034 1.24459 1.72132 2.05265 2.75452 3.01307 3.09375 3.29127 3.31949 3.38438 3.86452 4.06421 4.47596 4.50653 4.66370 4.72763 4.85233 4.96882 5.01943 5.10271 5.14122 5.34501 5.38479 5.48943 5.52921 5.63012 5.77420 5.82558 5.95164 6.01904 6.11305 6.14935 6.34093 6.49710 6.62038 7.15892 7.33159 7.74251 7.84532 7.94681 8.28874 9.04701 9.76431 9.93434 11.28165 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.037634 B = 0.002549 C = 0.002449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.835828 B =10982.169442 C =11432.502003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.023 4.023 3 C -0.226 4.226 4 C 0.246 3.754 5 N -0.609 5.609 6 C 0.523 3.477 7 O -0.488 6.488 8 C 0.521 3.479 9 O -0.520 6.520 10 N -0.577 5.577 11 C 0.108 3.892 12 C -0.148 4.148 13 C 0.178 3.822 14 H 0.080 0.920 15 N -0.733 5.733 16 C -0.257 4.257 17 H 0.093 0.907 18 C 0.011 3.989 19 N -0.927 5.927 20 Si 0.884 3.116 21 H -0.283 1.283 22 H -0.289 1.289 23 H -0.276 1.276 24 C 0.079 3.921 25 N -0.385 5.385 26 O 0.100 5.900 27 H 0.090 0.910 28 H 0.084 0.916 29 H 0.094 0.906 30 H 0.192 0.808 31 H 0.431 0.569 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.086 0.914 35 H 0.075 0.925 36 H 0.365 0.635 37 H 0.262 0.738 38 H 0.075 0.925 39 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.697 -17.309 3.637 27.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.087 4.087 3 C -0.249 4.249 4 C -0.003 4.003 5 N -0.262 5.262 6 C 0.304 3.696 7 O -0.360 6.360 8 C 0.302 3.698 9 O -0.397 6.397 10 N -0.310 5.310 11 C -0.015 4.015 12 C -0.187 4.187 13 C 0.065 3.935 14 H 0.098 0.902 15 N -0.374 5.374 16 C -0.387 4.387 17 H 0.111 0.889 18 C -0.186 4.186 19 N -0.573 5.573 20 Si 0.714 3.286 21 H -0.209 1.209 22 H -0.215 1.215 23 H -0.202 1.202 24 C -0.046 4.046 25 N -0.099 5.099 26 O 0.038 5.962 27 H 0.108 0.892 28 H 0.103 0.897 29 H 0.112 0.888 30 H 0.209 0.791 31 H 0.270 0.730 32 H 0.096 0.904 33 H 0.093 0.907 34 H 0.104 0.896 35 H 0.094 0.906 36 H 0.199 0.801 37 H 0.072 0.928 38 H 0.093 0.907 39 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -20.826 -18.151 3.437 27.838 hybrid contribution 0.082 1.153 1.190 1.659 sum -20.743 -16.998 4.627 27.214 Atomic orbital electron populations 1.20364 0.83567 1.04828 1.04331 1.24467 0.96564 0.85732 1.01917 1.22730 0.89063 1.02268 1.10853 1.20464 0.88119 0.88972 1.02697 1.42114 1.07158 1.05977 1.70966 1.20465 0.90841 0.81550 0.76713 1.90691 1.32337 1.67824 1.45107 1.19087 0.88107 0.82354 0.80249 1.90811 1.31715 1.67519 1.49630 1.48350 1.11112 1.03533 1.68001 1.22227 0.86614 0.89766 1.02883 1.23074 0.98635 0.94340 1.02634 1.21336 0.88207 0.86047 0.97867 0.90173 1.42657 1.32404 1.35373 1.26941 1.19081 1.01778 1.13161 1.04666 0.88889 1.24701 0.97122 0.98497 0.98286 1.69699 1.18206 1.30334 1.39053 0.86563 0.77835 0.79704 0.84471 1.20909 1.21546 1.20173 1.23703 0.86712 0.91547 1.02601 1.74095 0.97597 1.12984 1.25250 1.84813 1.10363 1.32388 1.68601 0.89175 0.89679 0.88778 0.79092 0.72964 0.90360 0.90697 0.89579 0.90588 0.80127 0.92810 0.90654 0.89845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.26 10.45 36.01 0.38 0.11 16 2 C -0.02 -0.19 7.48 -35.38 -0.26 -0.45 16 3 C -0.23 -2.29 9.79 -39.19 -0.38 -2.68 16 4 C 0.25 2.93 8.17 -154.93 -1.27 1.66 16 5 N -0.61 -7.15 5.41 -11.85 -0.06 -7.22 16 6 C 0.52 6.65 7.82 -11.62 -0.09 6.56 16 7 O -0.49 -6.24 11.39 5.49 0.06 -6.18 16 8 C 0.52 7.64 7.91 -11.61 -0.09 7.55 16 9 O -0.52 -8.79 16.73 5.49 0.09 -8.70 16 10 N -0.58 -8.40 3.32 -170.91 -0.57 -8.96 16 11 C 0.11 1.33 5.49 -3.06 -0.02 1.31 16 12 C -0.15 -1.96 6.59 -24.90 -0.16 -2.13 16 13 C 0.18 3.07 3.73 -65.66 -0.24 2.83 16 14 H 0.08 1.44 8.09 -51.93 -0.42 1.01 16 15 N -0.73 -15.92 5.04 -51.24 -0.26 -16.18 16 16 C -0.26 -6.85 10.44 -15.06 -0.16 -7.01 16 17 H 0.09 2.67 8.06 -52.49 -0.42 2.24 16 18 C 0.01 0.30 5.50 -17.43 -0.10 0.21 16 19 N -0.93 -28.15 13.97 55.49 0.78 -27.38 16 20 Si 0.88 21.03 27.74 -169.99 -4.71 16.32 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 23 H -0.28 -6.06 6.52 56.52 0.37 -5.69 16 24 C 0.08 1.32 6.61 -2.41 -0.02 1.30 16 25 N -0.38 -4.64 12.10 31.18 0.38 -4.27 16 26 O 0.10 1.02 11.19 17.05 0.19 1.21 16 27 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 28 H 0.08 0.20 8.14 -51.93 -0.42 -0.23 16 29 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.19 1.90 6.22 -52.49 -0.33 1.57 16 31 H 0.43 4.66 8.29 -40.82 -0.34 4.32 16 32 H 0.08 0.91 7.58 -51.93 -0.39 0.51 16 33 H 0.07 0.86 7.69 -51.93 -0.40 0.46 16 34 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.08 0.99 8.00 -51.92 -0.42 0.57 16 36 H 0.37 7.74 5.62 -40.82 -0.23 7.51 16 37 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 38 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 39 H 0.08 1.52 8.03 -51.93 -0.42 1.11 16 LS Contribution 334.22 15.07 5.04 5.04 Total: -1.00 -32.15 334.22 -6.13 -38.28 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: -4.64 Total: 8.77 kcal Atomic # 6 Polarization: 11.68 SS G_CDS: -2.42 Total: 9.27 kcal Atomic # 7 Polarization: -64.26 SS G_CDS: 0.26 Total: -64.00 kcal Atomic # 8 Polarization: -14.01 SS G_CDS: 0.35 Total: -13.67 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -4.71 Total: 16.32 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -32.15 -6.13 -38.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970698040.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.414 kcal (2) G-P(sol) polarization free energy of solvation -32.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds