Wall clock time and date at job start Fri Apr 10 2020 14:29:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35237 * 126.69251 * 2 1 4 4 C 1.42056 * 103.95865 * 179.97438 * 3 2 1 5 5 N 1.39355 * 126.90104 * 179.97438 * 4 3 2 6 6 C 1.34773 * 119.99852 * 0.02562 * 5 4 3 7 7 O 1.21355 * 120.00186 * 359.72624 * 6 5 4 8 8 C 1.49386 * 120.00002 * 179.97438 * 6 5 4 9 9 O 1.21355 * 119.99755 * 359.72867 * 8 6 5 10 10 N 1.34777 * 120.00031 * 179.73002 * 8 6 5 11 11 C 1.47021 * 125.64901 * 0.02562 * 10 8 6 12 12 C 1.54325 * 107.26976 * 181.02837 * 11 10 8 13 13 C 1.55151 * 102.94312 * 22.19419 * 12 11 10 14 14 H 1.08996 * 111.00612 * 82.60873 * 13 12 11 15 15 N 1.46502 * 111.00447 * 206.42645 * 13 12 11 16 16 C 1.36940 * 119.99922 * 205.00256 * 15 13 12 17 17 H 1.07995 * 119.99937 * 359.97438 * 16 15 13 18 18 C 1.38810 * 119.99863 * 180.02562 * 16 15 13 19 19 N 1.31622 * 120.00010 * 180.02562 * 18 16 15 20 20 Si 1.86803 * 120.00142 * 359.97438 * 18 16 15 21 21 H 1.48506 * 109.46799 * 90.00420 * 20 18 16 22 22 H 1.48496 * 109.47164 * 210.00349 * 20 18 16 23 23 H 1.48498 * 109.46818 * 330.00521 * 20 18 16 24 24 C 1.47427 * 125.64553 * 179.72164 * 10 8 6 25 25 N 1.30756 * 106.19956 * 0.24425 * 4 3 2 26 26 O 1.20918 * 111.46736 * 359.56839 * 25 4 3 27 27 H 1.09002 * 109.46245 * 90.00262 * 1 2 3 28 28 H 1.08999 * 109.47283 * 210.00034 * 1 2 3 29 29 H 1.08997 * 109.46846 * 330.00343 * 1 2 3 30 30 H 1.07999 * 128.02334 * 359.97438 * 3 2 1 31 31 H 0.97004 * 120.00130 * 180.02562 * 5 4 3 32 32 H 1.08998 * 109.88454 * 300.44923 * 11 10 8 33 33 H 1.09003 * 109.88170 * 61.45444 * 11 10 8 34 34 H 1.09000 * 110.71816 * 140.55971 * 12 11 10 35 35 H 1.09007 * 110.71703 * 263.83277 * 12 11 10 36 36 H 0.96999 * 120.00067 * 24.99985 * 15 13 12 37 37 H 0.96996 * 119.99924 * 179.97438 * 19 18 16 38 38 H 1.09003 * 110.36265 * 274.74173 * 24 10 8 39 39 H 1.09001 * 110.36901 * 37.06095 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3151 1.0844 0.0000 4 6 3.6253 0.5354 0.0006 5 7 4.8277 1.2399 0.0004 6 6 4.8190 2.5876 0.0000 7 8 3.7643 3.1876 -0.0052 8 6 6.1080 3.3428 0.0003 9 8 7.1628 2.7427 0.0059 10 7 6.0994 4.6905 -0.0056 11 6 4.8992 5.5397 -0.0121 12 6 5.3764 7.0070 -0.0439 13 6 6.8106 6.8935 -0.6245 14 1 6.7881 6.8352 -1.7127 15 7 7.6476 8.0101 -0.1785 16 6 8.7261 8.3992 -0.9273 17 1 8.9599 7.8826 -1.8464 18 6 9.5194 9.4568 -0.5044 19 7 10.5558 9.8311 -1.2244 20 14 9.1154 10.3499 1.0858 21 1 9.8217 9.6935 2.2153 22 1 9.5533 11.7651 0.9837 23 1 7.6503 10.3008 1.3225 24 6 7.2919 5.5573 -0.0003 25 7 3.4765 -0.7636 -0.0044 26 8 2.3082 -1.0752 0.0005 27 1 -0.3632 0.0000 -1.0277 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5138 30 1 2.0304 2.1262 -0.0004 31 1 5.6708 0.7602 0.0005 32 1 4.2986 5.3260 -0.8962 33 1 4.3116 5.3579 0.8877 34 1 4.7417 7.6048 -0.6979 35 1 5.3996 7.4268 0.9619 36 1 7.4378 8.4739 0.6472 37 1 11.1099 10.5704 -0.9291 38 1 7.6405 5.7164 1.0202 39 1 8.0829 5.1181 -0.6082 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970698040.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:29:29 Heat of formation + Delta-G solvation = 7.023388 kcal Electronic energy + Delta-G solvation = -24690.689815 eV Core-core repulsion = 20830.189964 eV Total energy + Delta-G solvation = -3860.499850 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.132 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -46.02546 -42.18978 -40.31938 -38.93876 -37.08424 -36.02625 -34.60234 -33.61841 -33.17189 -31.55427 -29.69590 -28.69520 -27.23704 -25.45885 -24.41122 -23.60175 -22.15471 -21.93758 -21.06662 -19.88105 -18.85647 -18.78018 -18.67991 -18.01046 -17.74178 -17.41217 -16.85032 -16.25061 -16.05071 -15.56078 -15.28020 -14.85259 -14.75743 -14.43918 -14.38906 -14.08151 -14.00950 -13.95268 -13.54315 -13.36456 -13.04706 -13.01090 -12.85398 -12.55592 -12.28747 -12.24643 -12.16562 -11.85264 -11.58403 -11.09247 -10.91982 -10.46853 -10.13506 -9.92996 -9.39903 -8.03493 -5.40426 -0.19797 0.49306 0.68078 1.16117 1.40228 1.44347 1.51385 1.93683 1.95934 2.20333 2.48679 2.87686 3.24936 3.26998 3.42653 3.72632 3.77491 3.86873 3.99615 4.19666 4.30682 4.32290 4.40965 4.57633 4.67753 4.77983 4.83478 4.86391 4.91775 4.94641 5.08047 5.16448 5.27997 5.28887 5.55726 5.75189 6.05568 6.19555 6.26729 6.59002 7.04798 7.18103 7.77011 7.97005 9.17289 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.037634 B = 0.002549 C = 0.002449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.835828 B =10982.169442 C =11432.502003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.002 4.002 3 C -0.246 4.246 4 C 0.227 3.773 5 N -0.604 5.604 6 C 0.533 3.467 7 O -0.486 6.486 8 C 0.521 3.479 9 O -0.548 6.548 10 N -0.577 5.577 11 C 0.112 3.888 12 C -0.133 4.133 13 C 0.169 3.831 14 H 0.070 0.930 15 N -0.735 5.735 16 C -0.239 4.239 17 H 0.057 0.943 18 C -0.062 4.062 19 N -0.982 5.982 20 Si 0.956 3.044 21 H -0.281 1.281 22 H -0.298 1.298 23 H -0.241 1.241 24 C 0.088 3.912 25 N -0.407 5.407 26 O 0.098 5.902 27 H 0.107 0.893 28 H 0.101 0.899 29 H 0.110 0.890 30 H 0.195 0.805 31 H 0.433 0.567 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.105 0.895 35 H 0.087 0.913 36 H 0.372 0.628 37 H 0.258 0.742 38 H 0.073 0.927 39 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.454 -17.718 5.150 31.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.066 4.066 3 C -0.269 4.269 4 C -0.021 4.021 5 N -0.257 5.257 6 C 0.314 3.686 7 O -0.357 6.357 8 C 0.303 3.697 9 O -0.427 6.427 10 N -0.309 5.309 11 C -0.010 4.010 12 C -0.171 4.171 13 C 0.058 3.942 14 H 0.088 0.912 15 N -0.377 5.377 16 C -0.370 4.370 17 H 0.075 0.925 18 C -0.253 4.253 19 N -0.631 5.631 20 Si 0.782 3.218 21 H -0.208 1.208 22 H -0.225 1.225 23 H -0.165 1.165 24 C -0.037 4.037 25 N -0.122 5.122 26 O 0.036 5.964 27 H 0.126 0.874 28 H 0.120 0.880 29 H 0.128 0.872 30 H 0.212 0.788 31 H 0.272 0.728 32 H 0.109 0.891 33 H 0.112 0.888 34 H 0.124 0.876 35 H 0.106 0.894 36 H 0.206 0.794 37 H 0.067 0.933 38 H 0.091 0.909 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -24.668 -18.613 4.959 31.298 hybrid contribution 1.165 1.119 0.629 1.733 sum -23.504 -17.495 5.588 29.828 Atomic orbital electron populations 1.20655 0.80076 1.06458 1.05886 1.25223 0.98131 0.84353 0.98866 1.22835 0.88564 1.02981 1.12483 1.20722 0.88521 0.89315 1.03513 1.41981 1.07588 1.05627 1.70521 1.19869 0.89795 0.81767 0.77174 1.90686 1.31790 1.67873 1.45371 1.19410 0.88585 0.82296 0.79448 1.90798 1.32999 1.68119 1.50797 1.48335 1.11102 1.03691 1.67819 1.22374 0.85708 0.88500 1.04423 1.23013 0.95370 0.95428 1.03316 1.21481 0.90294 0.84785 0.97600 0.91239 1.42554 1.31702 1.36687 1.26733 1.19015 1.02582 1.11884 1.03498 0.92453 1.25561 0.97292 1.00066 1.02414 1.69892 1.20101 1.31482 1.41640 0.85409 0.79527 0.77338 0.79491 1.20766 1.22512 1.16497 1.23309 0.87054 0.91593 1.01786 1.74092 0.98682 1.13234 1.26191 1.84783 1.10118 1.33134 1.68350 0.87423 0.87992 0.87164 0.78807 0.72760 0.89108 0.88833 0.87610 0.89433 0.79375 0.93273 0.90922 0.92327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.26 10.45 71.24 0.74 0.48 16 2 C 0.00 -0.03 7.48 24.99 0.19 0.16 16 3 C -0.25 -4.52 9.79 22.52 0.22 -4.30 16 4 C 0.23 5.19 8.17 134.16 1.10 6.29 16 5 N -0.60 -13.85 5.41 -310.79 -1.68 -15.54 16 6 C 0.53 12.91 7.82 87.25 0.68 13.60 16 7 O -0.49 -11.33 11.39 -3.26 -0.04 -11.37 16 8 C 0.52 14.92 7.91 87.25 0.69 15.61 16 9 O -0.55 -18.75 16.73 -3.26 -0.05 -18.80 16 10 N -0.58 -16.06 3.32 -812.98 -2.70 -18.76 16 11 C 0.11 2.41 5.49 86.73 0.48 2.88 16 12 C -0.13 -3.09 6.59 31.78 0.21 -2.88 16 13 C 0.17 5.68 3.73 46.46 0.17 5.85 16 14 H 0.07 2.49 8.09 -2.39 -0.02 2.47 16 15 N -0.73 -31.19 5.04 -316.02 -1.59 -32.78 16 16 C -0.24 -12.95 10.44 84.03 0.88 -12.07 16 17 H 0.06 3.45 8.06 -2.91 -0.02 3.43 16 18 C -0.06 -3.50 5.50 84.86 0.47 -3.03 16 19 N -0.98 -61.65 13.97 21.65 0.30 -61.35 16 20 Si 0.96 43.20 27.74 68.60 1.90 45.10 16 21 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 22 H -0.30 -13.86 7.11 99.48 0.71 -13.15 16 23 H -0.24 -9.40 6.52 99.48 0.65 -8.75 16 24 C 0.09 2.92 6.61 86.93 0.57 3.49 16 25 N -0.41 -9.52 12.10 -56.32 -0.68 -10.20 16 26 O 0.10 1.85 11.19 71.17 0.80 2.64 16 27 H 0.11 0.11 8.14 -2.39 -0.02 0.09 16 28 H 0.10 0.08 8.14 -2.39 -0.02 0.06 16 29 H 0.11 0.11 8.14 -2.39 -0.02 0.09 16 30 H 0.19 3.41 6.22 -2.91 -0.02 3.39 16 31 H 0.43 9.39 8.29 -92.71 -0.77 8.62 16 32 H 0.09 1.80 7.58 -2.39 -0.02 1.78 16 33 H 0.09 1.77 7.69 -2.39 -0.02 1.75 16 34 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 35 H 0.09 1.91 8.00 -2.38 -0.02 1.89 16 36 H 0.37 14.80 5.62 -92.71 -0.52 14.28 16 37 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 38 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 39 H 0.06 2.22 8.03 -2.39 -0.02 2.20 16 Total: -1.00 -71.88 334.22 2.42 -69.46 By element: Atomic # 1 Polarization: 25.75 SS G_CDS: -0.23 Total: 25.52 kcal Atomic # 6 Polarization: 19.67 SS G_CDS: 6.40 Total: 26.07 kcal Atomic # 7 Polarization: -132.27 SS G_CDS: -6.36 Total: -138.63 kcal Atomic # 8 Polarization: -28.23 SS G_CDS: 0.70 Total: -27.53 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 1.90 Total: 45.10 kcal Total: -71.88 2.42 -69.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970698040.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.485 kcal (2) G-P(sol) polarization free energy of solvation -71.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.462 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds