Wall clock time and date at job start Fri Apr 10 2020 14:29:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35236 * 126.68962 * 2 1 4 4 C 1.42055 * 103.95492 * 179.97438 * 3 2 1 5 5 N 1.39362 * 126.90032 * 179.74130 * 4 3 2 6 6 C 1.34778 * 119.99978 * 359.97438 * 5 4 3 7 7 O 1.21353 * 119.99957 * 0.02562 * 6 5 4 8 8 C 1.49375 * 120.00097 * 180.02562 * 6 5 4 9 9 O 1.21363 * 119.99996 * 359.97438 * 8 6 5 10 10 N 1.34778 * 120.00097 * 180.02562 * 8 6 5 11 11 C 1.46496 * 119.99773 * 180.02562 * 10 8 6 12 12 C 1.53001 * 109.46827 * 179.97438 * 11 10 8 13 13 H 1.08998 * 112.96760 * 306.67195 * 12 11 10 14 14 C 1.53946 * 113.76980 * 174.99541 * 12 11 10 15 15 C 1.53947 * 86.29177 * 222.09063 * 14 12 11 16 16 N 1.47583 * 86.11661 * 23.60836 * 15 14 12 17 17 C 1.36934 * 134.49309 * 155.35793 * 16 15 14 18 18 H 1.08004 * 119.99694 * 180.02562 * 17 16 15 19 19 C 1.38815 * 120.00160 * 0.02562 * 17 16 15 20 20 N 1.31618 * 119.99642 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99857 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46950 * 60.00550 * 21 19 17 23 23 H 1.48505 * 109.46708 * 179.97438 * 21 19 17 24 24 H 1.48491 * 109.47395 * 300.00107 * 21 19 17 25 25 N 1.30746 * 106.20216 * 0.02562 * 4 3 2 26 26 O 1.20912 * 111.46722 * 359.97438 * 25 4 3 27 27 H 1.09002 * 109.46886 * 89.99645 * 1 2 3 28 28 H 1.08993 * 109.47569 * 209.99818 * 1 2 3 29 29 H 1.09007 * 109.47250 * 330.00206 * 1 2 3 30 30 H 1.08000 * 128.02778 * 359.94605 * 3 2 1 31 31 H 0.97005 * 119.99690 * 180.02562 * 5 4 3 32 32 H 0.96994 * 119.99804 * 359.97438 * 10 8 6 33 33 H 1.09006 * 109.47063 * 299.99228 * 11 10 8 34 34 H 1.08995 * 109.48102 * 59.99561 * 11 10 8 35 35 H 1.09003 * 113.74079 * 336.43974 * 14 12 11 36 36 H 1.08998 * 113.74026 * 107.63839 * 14 12 11 37 37 H 1.09007 * 113.76913 * 137.90608 * 15 14 12 38 38 H 1.08992 * 113.77180 * 269.19377 * 15 14 12 39 39 H 0.97000 * 119.99672 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3150 1.0844 0.0000 4 6 3.6252 0.5354 0.0006 5 7 4.8276 1.2399 -0.0042 6 6 4.8190 2.5876 -0.0107 7 8 3.7642 3.1877 -0.0119 8 6 6.1078 3.3428 -0.0164 9 8 7.1627 2.7427 -0.0147 10 7 6.0992 4.6905 -0.0223 11 6 7.3633 5.4310 -0.0285 12 6 7.0741 6.9334 -0.0351 13 1 6.4035 7.2339 -0.8402 14 6 8.3353 7.8086 0.0809 15 6 7.5208 8.6777 1.0562 16 7 6.7000 7.4730 1.2866 17 6 5.9090 7.0328 2.3140 18 1 5.3989 6.0841 2.2345 19 6 5.7627 7.8058 3.4577 20 7 6.3839 8.9621 3.5543 21 14 4.6831 7.2055 4.8589 22 1 5.2042 5.9105 5.3655 23 1 4.6943 8.2062 5.9561 24 1 3.2932 7.0224 4.3695 25 7 3.4764 -0.7635 0.0003 26 8 2.3081 -1.0751 0.0002 27 1 -0.3633 0.0001 -1.0277 28 1 -0.3634 -0.8899 0.5138 29 1 -0.3634 0.8900 0.5138 30 1 2.0303 2.1262 -0.0008 31 1 5.6707 0.7602 -0.0036 32 1 5.2562 5.1701 -0.0233 33 1 7.9385 5.1753 0.8614 34 1 7.9346 5.1674 -0.9185 35 1 9.1803 7.3010 0.5462 36 1 8.6027 8.3178 -0.8449 37 1 8.0835 9.0000 1.9324 38 1 6.9820 9.4929 0.5733 39 1 6.2820 9.5021 4.3536 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699646793.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:29:55 Heat of formation + Delta-G solvation = 59.264314 kcal Electronic energy + Delta-G solvation = -24851.960590 eV Core-core repulsion = 20993.726076 eV Total energy + Delta-G solvation = -3858.234514 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.132 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -45.10083 -40.87966 -38.91644 -37.93390 -36.09286 -34.33776 -33.85232 -32.23919 -32.18831 -28.54203 -28.07457 -27.88831 -25.47959 -23.54642 -23.42142 -22.15354 -21.25998 -20.50698 -19.32321 -18.43143 -17.92164 -17.70400 -16.95582 -16.71844 -16.12519 -16.01052 -15.50202 -15.14539 -14.47247 -14.26615 -13.94267 -13.80484 -13.77317 -13.56795 -13.41768 -13.05263 -12.75878 -12.08950 -11.96837 -11.71517 -11.48893 -11.47389 -11.21038 -11.06430 -10.77035 -10.61556 -10.10071 -9.82666 -9.77873 -9.64961 -9.48527 -9.12907 -8.93457 -8.83678 -6.95587 -5.81009 -3.14164 0.93530 1.37379 1.89936 2.18375 2.88119 3.17037 3.36238 3.38392 3.41978 3.42334 4.07043 4.33898 4.42498 4.63423 4.79933 4.97462 5.03770 5.08007 5.27092 5.29536 5.50733 5.52840 5.56426 5.67882 5.80651 5.89138 6.08568 6.17186 6.28483 6.40374 6.54969 6.59425 6.67634 7.18800 7.25833 7.33528 7.53857 7.56260 7.93016 7.98886 8.06328 8.99497 9.66433 10.52909 11.35386 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.015088 B = 0.003538 C = 0.003042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.298214 B = 7912.168655 C = 9201.288270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.024 4.024 3 C -0.226 4.226 4 C 0.247 3.753 5 N -0.609 5.609 6 C 0.519 3.481 7 O -0.488 6.488 8 C 0.511 3.489 9 O -0.525 6.525 10 N -0.672 5.672 11 C 0.119 3.881 12 C 0.124 3.876 13 H 0.053 0.947 14 C -0.154 4.154 15 C 0.159 3.841 16 N -0.602 5.602 17 C -0.224 4.224 18 H 0.078 0.922 19 C -0.003 4.003 20 N -0.918 5.918 21 Si 0.907 3.093 22 H -0.285 1.285 23 H -0.289 1.289 24 H -0.284 1.284 25 N -0.386 5.386 26 O 0.099 5.901 27 H 0.089 0.911 28 H 0.084 0.916 29 H 0.094 0.906 30 H 0.192 0.808 31 H 0.431 0.569 32 H 0.417 0.583 33 H 0.081 0.919 34 H 0.070 0.930 35 H 0.077 0.923 36 H 0.055 0.945 37 H 0.074 0.926 38 H 0.028 0.972 39 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.820 -13.629 -10.108 18.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.087 4.087 3 C -0.249 4.249 4 C -0.002 4.002 5 N -0.262 5.262 6 C 0.301 3.699 7 O -0.358 6.358 8 C 0.289 3.711 9 O -0.402 6.402 10 N -0.323 5.323 11 C -0.005 4.005 12 C 0.016 3.984 13 H 0.070 0.930 14 C -0.193 4.193 15 C 0.034 3.966 16 N -0.328 5.328 17 C -0.352 4.352 18 H 0.096 0.904 19 C -0.200 4.200 20 N -0.565 5.565 21 Si 0.737 3.263 22 H -0.212 1.212 23 H -0.215 1.215 24 H -0.211 1.211 25 N -0.101 5.101 26 O 0.037 5.963 27 H 0.108 0.892 28 H 0.103 0.897 29 H 0.113 0.887 30 H 0.209 0.791 31 H 0.270 0.730 32 H 0.253 0.747 33 H 0.100 0.900 34 H 0.088 0.912 35 H 0.096 0.904 36 H 0.074 0.926 37 H 0.093 0.907 38 H 0.045 0.955 39 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -6.121 -14.517 -9.765 18.535 hybrid contribution -0.953 0.497 0.854 1.373 sum -7.074 -14.020 -8.911 18.056 Atomic orbital electron populations 1.20360 0.83576 1.04872 1.04249 1.24448 0.96545 0.85707 1.02032 1.22770 0.89133 1.02364 1.10608 1.20468 0.88180 0.88960 1.02559 1.42111 1.07057 1.06015 1.71065 1.20578 0.91002 0.81628 0.76710 1.90729 1.32264 1.67976 1.44859 1.19407 0.87957 0.83989 0.79720 1.90777 1.31541 1.68483 1.49417 1.45812 1.12403 1.04496 1.69602 1.22062 0.84115 0.92050 1.02230 1.22538 0.95060 0.90271 0.90533 0.92987 1.23779 0.96804 0.99036 0.99682 1.22204 0.89811 0.89353 0.95273 1.46099 1.55901 1.19191 1.11619 1.18893 1.21365 1.02200 0.92724 0.90449 1.24744 1.00470 0.96628 0.98192 1.69803 1.45904 1.12395 1.28396 0.86288 0.80357 0.77686 0.81990 1.21153 1.21465 1.21100 1.74069 0.97612 1.12961 1.25467 1.84795 1.10370 1.32388 1.68708 0.89240 0.89709 0.88721 0.79055 0.73023 0.74650 0.90033 0.91198 0.90394 0.92627 0.90730 0.95459 0.93564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.39 10.45 36.00 0.38 -0.01 16 2 C -0.02 -0.23 7.47 -35.38 -0.26 -0.50 16 3 C -0.23 -2.79 9.79 -39.19 -0.38 -3.17 16 4 C 0.25 3.38 8.17 -154.93 -1.27 2.12 16 5 N -0.61 -8.16 5.41 -11.86 -0.06 -8.22 16 6 C 0.52 7.70 7.85 -11.62 -0.09 7.61 16 7 O -0.49 -7.78 13.75 5.49 0.08 -7.70 16 8 C 0.51 8.11 7.89 -11.62 -0.09 8.02 16 9 O -0.52 -9.06 16.48 5.49 0.09 -8.97 16 10 N -0.67 -10.94 5.52 -60.76 -0.34 -11.27 16 11 C 0.12 1.98 5.54 -4.04 -0.02 1.96 16 12 C 0.12 2.25 4.33 -66.86 -0.29 1.96 16 13 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 14 C -0.15 -2.65 7.86 -25.80 -0.20 -2.85 16 15 C 0.16 3.52 7.51 -2.97 -0.02 3.50 16 16 N -0.60 -14.25 3.57 -170.73 -0.61 -14.86 16 17 C -0.22 -5.96 10.51 -15.06 -0.16 -6.11 16 18 H 0.08 1.99 7.80 -52.48 -0.41 1.58 16 19 C 0.00 -0.09 5.50 -17.43 -0.10 -0.19 16 20 N -0.92 -26.59 11.38 55.49 0.63 -25.95 16 21 Si 0.91 22.05 29.55 -169.99 -5.02 17.02 16 22 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 23 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 24 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 25 N -0.39 -5.22 12.10 31.18 0.38 -4.84 16 26 O 0.10 1.16 11.19 17.07 0.19 1.35 16 27 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.19 2.42 6.22 -52.49 -0.33 2.09 16 31 H 0.43 5.17 8.29 -40.82 -0.34 4.83 16 32 H 0.42 6.86 7.94 -40.82 -0.32 6.54 16 33 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 34 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.08 1.31 8.10 -51.93 -0.42 0.89 16 36 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.07 1.85 7.16 -51.92 -0.37 1.48 16 38 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 342.11 15.07 5.16 5.16 Total: -1.00 -31.98 342.11 -6.73 -38.71 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: -4.71 Total: 7.26 kcal Atomic # 6 Polarization: 14.84 SS G_CDS: -2.51 Total: 12.33 kcal Atomic # 7 Polarization: -65.15 SS G_CDS: 0.00 Total: -65.15 kcal Atomic # 8 Polarization: -15.68 SS G_CDS: 0.36 Total: -15.32 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.98 -6.73 -38.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699646793.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.972 kcal (2) G-P(sol) polarization free energy of solvation -31.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.708 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds