Wall clock time and date at job start Fri Apr 10 2020 14:33:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52999 * 109.47317 * 119.99641 * 2 1 3 5 5 C 1.50704 * 109.47137 * 295.00578 * 4 2 1 6 6 C 1.38248 * 119.97127 * 269.71857 * 5 4 2 7 7 C 1.38196 * 120.02452 * 179.72264 * 6 5 4 8 8 C 1.38461 * 119.97409 * 0.57942 * 7 6 5 9 9 F 1.35102 * 120.02672 * 179.67981 * 8 7 6 10 10 C 1.38457 * 119.94540 * 359.69825 * 8 7 6 11 11 C 1.38197 * 119.97938 * 0.02562 * 10 8 7 12 12 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 13 13 O 1.21277 * 120.00304 * 240.00314 * 12 2 1 14 14 N 1.34778 * 119.99637 * 59.99942 * 12 2 1 15 15 C 1.46505 * 119.99943 * 180.02562 * 14 12 2 16 16 C 1.50699 * 109.47262 * 179.97438 * 15 14 12 17 17 O 1.21298 * 119.99868 * 0.02562 * 16 15 14 18 18 N 1.34774 * 119.99942 * 180.02562 * 16 15 14 19 19 C 1.37100 * 119.99915 * 180.02562 * 18 16 15 20 20 H 1.08000 * 119.99819 * 359.97438 * 19 18 16 21 21 C 1.38952 * 120.00125 * 180.02562 * 19 18 16 22 22 N 1.31405 * 120.00313 * 179.97438 * 21 19 18 23 23 Si 1.86804 * 119.99696 * 359.97438 * 21 19 18 24 24 H 1.48498 * 109.47101 * 90.00355 * 23 21 19 25 25 H 1.48504 * 109.46994 * 210.00132 * 23 21 19 26 26 H 1.48503 * 109.47099 * 330.00135 * 23 21 19 27 27 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 29 29 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 30 30 H 1.09006 * 109.47194 * 55.00274 * 4 2 1 31 31 H 1.08997 * 109.47756 * 174.99755 * 4 2 1 32 32 H 1.08004 * 119.98450 * 359.97438 * 6 5 4 33 33 H 1.07995 * 120.01389 * 180.25401 * 7 6 5 34 34 H 1.08006 * 120.01416 * 180.02562 * 10 8 7 35 35 H 1.07995 * 119.99236 * 180.02562 * 11 10 8 36 36 H 0.97000 * 120.00446 * 0.02562 * 14 12 2 37 37 H 1.09000 * 109.47120 * 300.00214 * 15 14 12 38 38 H 1.09002 * 109.46801 * 59.99643 * 15 14 12 39 39 H 0.96998 * 120.00125 * 359.97438 * 18 16 15 40 40 H 0.96999 * 120.00116 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6412 0.0572 2.4766 6 6 2.4844 1.0291 2.9822 7 6 2.1172 1.7475 4.1043 8 6 0.9098 1.4851 4.7291 9 9 0.5528 2.1823 5.8299 10 6 0.0689 0.5074 4.2252 11 6 0.4355 -0.2057 3.0997 12 6 2.0324 -0.7104 -1.2304 13 8 2.7296 -1.6965 -1.1191 14 7 1.7068 -0.2500 -2.4545 15 6 2.1947 -0.9409 -3.6507 16 6 1.6920 -0.2308 -4.8812 17 8 0.9950 0.7557 -4.7699 18 7 2.0167 -0.6919 -6.1052 19 6 1.5598 -0.0456 -7.2247 20 1 0.9393 0.8327 -7.1256 21 6 1.8942 -0.5213 -8.4867 22 7 1.4558 0.0978 -9.5597 23 14 2.9669 -2.0410 -8.6580 24 1 2.1074 -3.2512 -8.7021 25 1 3.7580 -1.9498 -9.9114 26 1 3.8881 -2.1301 -7.4966 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 0.5139 0.8900 30 1 1.6054 -1.7198 1.2952 31 1 3.1263 -0.7995 1.2057 32 1 3.4285 1.2299 2.4977 33 1 2.7742 2.5095 4.4967 34 1 -0.8734 0.3022 4.7115 35 1 -0.2205 -0.9680 2.7061 36 1 1.1494 0.5389 -2.5436 37 1 3.2847 -0.9413 -3.6508 38 1 1.8310 -1.9684 -3.6505 39 1 2.5744 -1.4806 -6.1942 40 1 1.6895 -0.2340 -10.4406 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000804821415.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:33:53 Heat of formation + Delta-G solvation = -106.175282 kcal Electronic energy + Delta-G solvation = -23864.522545 eV Core-core repulsion = 19979.194071 eV Total energy + Delta-G solvation = -3885.328474 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.132 amu Computer time = 2.18 seconds Orbital eigenvalues (eV) -49.18475 -40.24940 -39.32527 -38.35084 -35.03754 -34.58630 -33.80586 -31.84491 -31.51750 -30.91073 -27.91753 -26.83441 -24.70054 -23.52862 -23.14685 -21.42083 -19.93498 -19.57368 -18.62664 -17.97678 -17.32676 -16.68776 -16.01923 -15.87208 -15.84203 -15.56685 -15.23433 -14.89443 -14.65494 -14.32752 -14.03750 -13.89191 -13.69134 -13.54471 -13.18908 -12.96771 -12.54583 -12.39000 -12.34595 -12.21208 -12.06555 -11.70309 -11.46785 -11.30354 -11.26534 -11.13121 -10.67482 -10.09787 -9.75633 -9.73435 -9.43871 -8.93502 -8.85706 -8.80882 -8.34163 -6.44047 -3.96815 0.78530 0.88097 2.70040 2.96589 3.01269 3.09011 3.13029 3.33864 3.52149 3.94075 4.00382 4.35959 4.39361 4.52000 4.56170 4.64513 4.74054 4.90696 4.93282 5.01189 5.10652 5.23582 5.43908 5.52984 5.58241 5.62808 5.63725 5.72110 5.76288 5.77325 5.78131 5.87918 5.96145 5.99112 6.24592 6.51712 6.55609 7.40375 7.68308 7.96684 8.30498 8.42349 8.78185 9.26206 9.59448 10.68027 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.039231 B = 0.002146 C = 0.002098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.553900 B =13046.581093 C =13341.630233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.103 4.103 3 H 0.100 0.900 4 C -0.062 4.062 5 C -0.086 4.086 6 C -0.087 4.087 7 C -0.151 4.151 8 C 0.090 3.910 9 F -0.143 7.143 10 C -0.152 4.152 11 C -0.085 4.085 12 C 0.516 3.484 13 O -0.550 6.550 14 N -0.706 5.706 15 C 0.105 3.895 16 C 0.437 3.563 17 O -0.579 6.579 18 N -0.576 5.576 19 C -0.311 4.311 20 H 0.122 0.878 21 C 0.045 3.955 22 N -0.873 5.873 23 Si 0.879 3.121 24 H -0.269 1.269 25 H -0.274 1.274 26 H -0.267 1.267 27 H 0.062 0.938 28 H 0.066 0.934 29 H 0.069 0.931 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.134 0.866 33 H 0.134 0.866 34 H 0.134 0.866 35 H 0.134 0.866 36 H 0.412 0.588 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.374 0.626 40 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.753 -1.454 25.241 25.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.125 4.125 3 H 0.118 0.882 4 C -0.099 4.099 5 C -0.086 4.086 6 C -0.105 4.105 7 C -0.170 4.170 8 C 0.071 3.929 9 F -0.122 7.122 10 C -0.171 4.171 11 C -0.104 4.104 12 C 0.302 3.698 13 O -0.428 6.428 14 N -0.360 5.360 15 C -0.022 4.022 16 C 0.223 3.777 17 O -0.464 6.464 18 N -0.213 5.213 19 C -0.439 4.439 20 H 0.139 0.861 21 C -0.159 4.159 22 N -0.512 5.512 23 Si 0.705 3.295 24 H -0.194 1.194 25 H -0.200 1.200 26 H -0.192 1.192 27 H 0.081 0.919 28 H 0.085 0.915 29 H 0.088 0.912 30 H 0.101 0.899 31 H 0.103 0.897 32 H 0.152 0.848 33 H 0.152 0.848 34 H 0.152 0.848 35 H 0.152 0.848 36 H 0.251 0.749 37 H 0.103 0.897 38 H 0.103 0.897 39 H 0.208 0.792 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.751 -1.447 25.137 25.190 hybrid contribution 0.526 -0.608 -0.280 0.852 sum 1.278 -2.056 24.857 24.974 Atomic orbital electron populations 1.21899 0.92670 1.02946 1.03240 1.21244 0.97980 1.00960 0.92276 0.88221 1.20421 1.02478 0.98094 0.88940 1.19994 0.94500 0.97035 0.97115 1.20987 0.99808 0.94677 0.95030 1.21155 0.96063 1.02202 0.97608 1.17748 0.95310 0.94075 0.85801 1.91498 1.92001 1.77683 1.50972 1.21157 1.00539 0.97069 0.98362 1.20994 0.96072 0.99061 0.94225 1.20526 0.80173 0.84612 0.84493 1.90682 1.38542 1.26622 1.86984 1.45731 1.53296 1.32486 1.04521 1.20981 0.99988 0.96672 0.84608 1.19645 0.86363 0.87583 0.84118 1.90541 1.41960 1.28089 1.85773 1.42131 1.46224 1.27255 1.05723 1.19441 1.30375 1.12168 0.81934 0.86070 1.25074 0.97632 0.98155 0.95066 1.69613 1.43913 1.39616 0.98069 0.86670 0.80817 0.83158 0.78831 1.19375 1.19951 1.19245 0.91902 0.91474 0.91172 0.89898 0.89698 0.84842 0.84793 0.84795 0.84813 0.74934 0.89741 0.89739 0.79245 0.91350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 8.66 37.16 0.32 -0.98 16 2 C -0.10 -1.01 2.71 -91.78 -0.25 -1.26 16 3 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 4 C -0.06 -0.55 4.19 -27.88 -0.12 -0.67 16 5 C -0.09 -0.69 4.71 -104.62 -0.49 -1.18 16 6 C -0.09 -0.66 9.70 -39.59 -0.38 -1.05 16 7 C -0.15 -1.20 10.03 -39.51 -0.40 -1.59 16 8 C 0.09 0.79 7.30 -39.42 -0.29 0.50 16 9 F -0.14 -1.40 17.27 2.25 0.04 -1.36 16 10 C -0.15 -1.18 10.03 -39.52 -0.40 -1.58 16 11 C -0.09 -0.63 7.96 -39.59 -0.32 -0.95 16 12 C 0.52 7.04 7.15 -10.99 -0.08 6.97 16 13 O -0.55 -9.08 15.92 5.56 0.09 -8.99 16 14 N -0.71 -10.53 5.42 -61.47 -0.33 -10.87 16 15 C 0.11 1.75 6.15 -5.19 -0.03 1.72 16 16 C 0.44 9.36 7.85 -10.99 -0.09 9.28 16 17 O -0.58 -14.29 15.24 5.54 0.08 -14.21 16 18 N -0.58 -13.15 5.09 -10.96 -0.06 -13.20 16 19 C -0.31 -8.45 10.16 -14.93 -0.15 -8.60 16 20 H 0.12 3.76 7.39 -52.49 -0.39 3.37 16 21 C 0.05 1.20 5.50 -17.47 -0.10 1.10 16 22 N -0.87 -24.68 13.96 55.50 0.77 -23.91 16 23 Si 0.88 18.74 27.74 -169.99 -4.71 14.03 16 24 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 25 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 26 H -0.27 -5.20 6.52 56.52 0.37 -4.84 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.07 0.62 7.56 -51.93 -0.39 0.23 16 29 H 0.07 0.52 6.27 -51.93 -0.33 0.20 16 30 H 0.08 0.76 8.09 -51.93 -0.42 0.34 16 31 H 0.08 0.81 7.90 -51.93 -0.41 0.40 16 32 H 0.13 0.83 8.06 -52.48 -0.42 0.40 16 33 H 0.13 0.85 8.06 -52.49 -0.42 0.42 16 34 H 0.13 0.82 8.06 -52.48 -0.42 0.40 16 35 H 0.13 0.79 8.04 -52.49 -0.42 0.37 16 36 H 0.41 6.11 6.86 -40.82 -0.28 5.83 16 37 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 38 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 39 H 0.37 7.53 5.76 -40.82 -0.24 7.30 16 40 H 0.28 7.18 8.31 -40.82 -0.34 6.85 16 LS Contribution 346.38 15.07 5.22 5.22 Total: -1.00 -32.00 346.38 -6.66 -38.65 By element: Atomic # 1 Polarization: 17.92 SS G_CDS: -5.00 Total: 12.92 kcal Atomic # 6 Polarization: 4.48 SS G_CDS: -2.76 Total: 1.71 kcal Atomic # 7 Polarization: -48.36 SS G_CDS: 0.39 Total: -47.98 kcal Atomic # 8 Polarization: -23.37 SS G_CDS: 0.17 Total: -23.20 kcal Atomic # 9 Polarization: -1.40 SS G_CDS: 0.04 Total: -1.36 kcal Atomic # 14 Polarization: 18.74 SS G_CDS: -4.71 Total: 14.03 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.00 -6.66 -38.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000804821415.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.521 kcal (2) G-P(sol) polarization free energy of solvation -31.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.18 seconds