Wall clock time and date at job start Fri Apr 10 2020 14:33:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52999 * 109.47317 * 119.99641 * 2 1 3 5 5 C 1.50704 * 109.47137 * 295.00578 * 4 2 1 6 6 C 1.38248 * 119.97127 * 269.71857 * 5 4 2 7 7 C 1.38196 * 120.02452 * 179.72264 * 6 5 4 8 8 C 1.38461 * 119.97409 * 0.57942 * 7 6 5 9 9 F 1.35102 * 120.02672 * 179.67981 * 8 7 6 10 10 C 1.38457 * 119.94540 * 359.69825 * 8 7 6 11 11 C 1.38197 * 119.97938 * 0.02562 * 10 8 7 12 12 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 13 13 O 1.21277 * 120.00304 * 240.00314 * 12 2 1 14 14 N 1.34778 * 119.99637 * 59.99942 * 12 2 1 15 15 C 1.46505 * 119.99943 * 180.02562 * 14 12 2 16 16 C 1.50699 * 109.47262 * 179.97438 * 15 14 12 17 17 O 1.21298 * 119.99868 * 0.02562 * 16 15 14 18 18 N 1.34774 * 119.99942 * 180.02562 * 16 15 14 19 19 C 1.37100 * 119.99915 * 180.02562 * 18 16 15 20 20 H 1.08000 * 119.99819 * 359.97438 * 19 18 16 21 21 C 1.38952 * 120.00125 * 180.02562 * 19 18 16 22 22 N 1.31405 * 120.00313 * 179.97438 * 21 19 18 23 23 Si 1.86804 * 119.99696 * 359.97438 * 21 19 18 24 24 H 1.48498 * 109.47101 * 90.00355 * 23 21 19 25 25 H 1.48504 * 109.46994 * 210.00132 * 23 21 19 26 26 H 1.48503 * 109.47099 * 330.00135 * 23 21 19 27 27 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 29 29 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 30 30 H 1.09006 * 109.47194 * 55.00274 * 4 2 1 31 31 H 1.08997 * 109.47756 * 174.99755 * 4 2 1 32 32 H 1.08004 * 119.98450 * 359.97438 * 6 5 4 33 33 H 1.07995 * 120.01389 * 180.25401 * 7 6 5 34 34 H 1.08006 * 120.01416 * 180.02562 * 10 8 7 35 35 H 1.07995 * 119.99236 * 180.02562 * 11 10 8 36 36 H 0.97000 * 120.00446 * 0.02562 * 14 12 2 37 37 H 1.09000 * 109.47120 * 300.00214 * 15 14 12 38 38 H 1.09002 * 109.46801 * 59.99643 * 15 14 12 39 39 H 0.96998 * 120.00125 * 359.97438 * 18 16 15 40 40 H 0.96999 * 120.00116 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6412 0.0572 2.4766 6 6 2.4844 1.0291 2.9822 7 6 2.1172 1.7475 4.1043 8 6 0.9098 1.4851 4.7291 9 9 0.5528 2.1823 5.8299 10 6 0.0689 0.5074 4.2252 11 6 0.4355 -0.2057 3.0997 12 6 2.0324 -0.7104 -1.2304 13 8 2.7296 -1.6965 -1.1191 14 7 1.7068 -0.2500 -2.4545 15 6 2.1947 -0.9409 -3.6507 16 6 1.6920 -0.2308 -4.8812 17 8 0.9950 0.7557 -4.7699 18 7 2.0167 -0.6919 -6.1052 19 6 1.5598 -0.0456 -7.2247 20 1 0.9393 0.8327 -7.1256 21 6 1.8942 -0.5213 -8.4867 22 7 1.4558 0.0978 -9.5597 23 14 2.9669 -2.0410 -8.6580 24 1 2.1074 -3.2512 -8.7021 25 1 3.7580 -1.9498 -9.9114 26 1 3.8881 -2.1301 -7.4966 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 0.5139 0.8900 30 1 1.6054 -1.7198 1.2952 31 1 3.1263 -0.7995 1.2057 32 1 3.4285 1.2299 2.4977 33 1 2.7742 2.5095 4.4967 34 1 -0.8734 0.3022 4.7115 35 1 -0.2205 -0.9680 2.7061 36 1 1.1494 0.5389 -2.5436 37 1 3.2847 -0.9413 -3.6508 38 1 1.8310 -1.9684 -3.6505 39 1 2.5744 -1.4806 -6.1942 40 1 1.6895 -0.2340 -10.4406 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000804821415.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:33:52 Heat of formation + Delta-G solvation = -127.663772 kcal Electronic energy + Delta-G solvation = -23865.454356 eV Core-core repulsion = 19979.194071 eV Total energy + Delta-G solvation = -3886.260285 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.132 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.86629 -41.29357 -40.36086 -39.77600 -36.30529 -35.81793 -35.31948 -33.83566 -32.08593 -31.64736 -29.35430 -27.51421 -26.41400 -24.39309 -23.84079 -22.18221 -21.46981 -20.93783 -20.37729 -18.61190 -18.49078 -17.43981 -17.35569 -17.07749 -16.79153 -16.62705 -16.52794 -16.16866 -15.84767 -15.43411 -14.96320 -14.85362 -14.68824 -14.40285 -14.30637 -14.28194 -14.05606 -13.83969 -13.43982 -13.07133 -13.00526 -12.95192 -12.44955 -12.39215 -12.13470 -12.01777 -11.99944 -11.77927 -11.58254 -10.84546 -10.65253 -10.33663 -10.14487 -10.00857 -9.48465 -8.45746 -6.07795 0.16567 0.31892 1.30801 1.33830 1.43748 1.61851 1.80197 2.04474 2.20331 2.64264 2.89276 3.10494 3.33903 3.59550 3.79021 3.90954 3.96936 4.01792 4.03576 4.17796 4.36550 4.39338 4.40587 4.43597 4.52255 4.80559 4.88166 4.91659 5.04893 5.09816 5.20765 5.21271 5.28518 5.32336 5.33418 5.48689 5.64004 5.88169 5.96998 6.47724 6.53138 6.78312 7.17376 7.30171 7.78182 8.70630 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.039231 B = 0.002146 C = 0.002098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.553900 B =13046.581093 C =13341.630233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.096 4.096 3 H 0.113 0.887 4 C -0.054 4.054 5 C -0.089 4.089 6 C -0.090 4.090 7 C -0.156 4.156 8 C 0.070 3.930 9 F -0.153 7.153 10 C -0.155 4.155 11 C -0.086 4.086 12 C 0.519 3.481 13 O -0.576 6.576 14 N -0.711 5.711 15 C 0.116 3.884 16 C 0.444 3.556 17 O -0.614 6.614 18 N -0.579 5.579 19 C -0.331 4.331 20 H 0.063 0.937 21 C -0.009 4.009 22 N -0.926 5.926 23 Si 0.959 3.041 24 H -0.256 1.256 25 H -0.274 1.274 26 H -0.232 1.232 27 H 0.064 0.936 28 H 0.059 0.941 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.147 0.853 33 H 0.146 0.854 34 H 0.148 0.852 35 H 0.150 0.850 36 H 0.413 0.587 37 H 0.103 0.897 38 H 0.104 0.896 39 H 0.392 0.608 40 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.959 -3.313 26.801 27.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.117 4.117 3 H 0.131 0.869 4 C -0.092 4.092 5 C -0.089 4.089 6 C -0.108 4.108 7 C -0.175 4.175 8 C 0.051 3.949 9 F -0.132 7.132 10 C -0.174 4.174 11 C -0.104 4.104 12 C 0.307 3.693 13 O -0.456 6.456 14 N -0.365 5.365 15 C -0.011 4.011 16 C 0.232 3.768 17 O -0.500 6.500 18 N -0.219 5.219 19 C -0.460 4.460 20 H 0.081 0.919 21 C -0.209 4.209 22 N -0.565 5.565 23 Si 0.779 3.221 24 H -0.181 1.181 25 H -0.199 1.199 26 H -0.156 1.156 27 H 0.083 0.917 28 H 0.078 0.922 29 H 0.103 0.897 30 H 0.099 0.901 31 H 0.097 0.903 32 H 0.165 0.835 33 H 0.164 0.836 34 H 0.166 0.834 35 H 0.168 0.832 36 H 0.251 0.749 37 H 0.121 0.879 38 H 0.122 0.878 39 H 0.228 0.772 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 1.956 -3.303 26.735 27.010 hybrid contribution 0.078 0.072 -0.691 0.699 sum 2.034 -3.231 26.044 26.322 Atomic orbital electron populations 1.21893 0.91708 1.03209 1.03647 1.21265 0.98627 1.01185 0.90601 0.86883 1.20325 1.02054 0.98007 0.88803 1.19962 0.94909 0.97158 0.96912 1.21172 1.00330 0.94396 0.94919 1.21336 0.96009 1.02504 0.97625 1.18036 0.96131 0.94749 0.85976 1.91470 1.92147 1.78008 1.51537 1.21354 1.00969 0.96641 0.98429 1.21179 0.96077 0.99159 0.93938 1.21141 0.79256 0.84167 0.84774 1.90672 1.39747 1.27900 1.87289 1.45819 1.53576 1.32564 1.04543 1.20885 1.00878 0.96773 0.82594 1.20561 0.84481 0.86680 0.85092 1.90531 1.43128 1.29779 1.86601 1.41945 1.47039 1.27887 1.04992 1.19025 1.31139 1.11610 0.84230 0.91859 1.26081 0.98917 1.02068 0.93865 1.69777 1.45739 1.42079 0.98950 0.85440 0.78965 0.77736 0.79940 1.18084 1.19890 1.15567 0.91741 0.92174 0.89666 0.90086 0.90257 0.83498 0.83624 0.83441 0.83220 0.74890 0.87907 0.87832 0.77241 0.90932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 8.66 71.98 0.62 -1.61 16 2 C -0.10 -1.65 2.71 -11.54 -0.03 -1.69 16 3 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 4 C -0.05 -0.85 4.19 29.85 0.13 -0.72 16 5 C -0.09 -1.23 4.71 -19.86 -0.09 -1.32 16 6 C -0.09 -1.20 9.70 22.26 0.22 -0.98 16 7 C -0.16 -2.23 10.03 22.31 0.22 -2.01 16 8 C 0.07 1.15 7.30 22.38 0.16 1.31 16 9 F -0.15 -2.89 17.27 44.97 0.78 -2.11 16 10 C -0.16 -2.13 10.03 22.31 0.22 -1.91 16 11 C -0.09 -1.07 7.96 22.26 0.18 -0.90 16 12 C 0.52 13.07 7.15 87.66 0.63 13.69 16 13 O -0.58 -17.73 15.92 -3.02 -0.05 -17.77 16 14 N -0.71 -19.95 5.42 -466.78 -2.53 -22.48 16 15 C 0.12 3.61 6.15 85.63 0.53 4.14 16 16 C 0.44 18.78 7.85 87.66 0.69 19.47 16 17 O -0.61 -30.86 15.24 -3.09 -0.05 -30.91 16 18 N -0.58 -26.05 5.09 -306.98 -1.56 -27.61 16 19 C -0.33 -18.54 10.16 84.04 0.85 -17.69 16 20 H 0.06 4.20 7.39 -2.91 -0.02 4.17 16 21 C -0.01 -0.50 5.50 84.93 0.47 -0.03 16 22 N -0.93 -53.93 13.96 21.66 0.30 -53.63 16 23 Si 0.96 37.53 27.74 68.60 1.90 39.43 16 24 H -0.26 -9.55 7.11 99.48 0.71 -8.84 16 25 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 26 H -0.23 -7.71 6.52 99.48 0.65 -7.06 16 27 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.06 1.01 7.56 -2.39 -0.02 1.00 16 29 H 0.08 1.06 6.27 -2.38 -0.01 1.04 16 30 H 0.08 1.31 8.09 -2.38 -0.02 1.29 16 31 H 0.08 1.35 7.90 -2.39 -0.02 1.33 16 32 H 0.15 1.49 8.06 -2.91 -0.02 1.47 16 33 H 0.15 1.63 8.06 -2.91 -0.02 1.61 16 34 H 0.15 1.53 8.06 -2.91 -0.02 1.51 16 35 H 0.15 1.35 8.04 -2.91 -0.02 1.33 16 36 H 0.41 11.78 6.86 -92.71 -0.64 11.15 16 37 H 0.10 2.89 8.14 -2.39 -0.02 2.87 16 38 H 0.10 2.89 8.14 -2.39 -0.02 2.88 16 39 H 0.39 14.75 5.76 -92.71 -0.53 14.21 16 40 H 0.28 14.96 8.31 -92.71 -0.77 14.19 16 Total: -1.00 -71.98 346.38 3.44 -68.54 By element: Atomic # 1 Polarization: 36.92 SS G_CDS: -0.14 Total: 36.78 kcal Atomic # 6 Polarization: 4.96 SS G_CDS: 4.79 Total: 9.76 kcal Atomic # 7 Polarization: -99.93 SS G_CDS: -3.79 Total: -103.72 kcal Atomic # 8 Polarization: -48.59 SS G_CDS: -0.10 Total: -48.68 kcal Atomic # 9 Polarization: -2.89 SS G_CDS: 0.78 Total: -2.11 kcal Atomic # 14 Polarization: 37.53 SS G_CDS: 1.90 Total: 39.43 kcal Total: -71.98 3.44 -68.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000804821415.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.126 kcal (2) G-P(sol) polarization free energy of solvation -71.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds