Wall clock time and date at job start Fri Apr 10 2020 14:32:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 110.88515 * 2 1 4 4 C 1.55133 * 110.90663 * 124.09577 * 2 1 3 5 5 N 1.47422 * 104.72451 * 155.27613 * 4 2 1 6 6 C 1.34772 * 125.65300 * 155.81806 * 5 4 2 7 7 O 1.21374 * 119.99499 * 359.71224 * 6 5 4 8 8 C 1.49299 * 120.00375 * 179.71421 * 6 5 4 9 9 O 1.21403 * 120.00147 * 359.97438 * 8 6 5 10 10 N 1.34776 * 119.99882 * 180.27493 * 8 6 5 11 11 C 1.40303 * 119.99779 * 179.72222 * 10 8 6 12 12 C 1.40720 * 126.10082 * 359.69355 * 11 10 8 13 13 N 1.30882 * 108.37738 * 179.81208 * 12 11 10 14 14 N 1.40065 * 108.43169 * 0.44428 * 13 12 11 15 15 C 1.37296 * 126.05279 * 179.72122 * 14 13 12 16 16 H 1.08000 * 119.99788 * 174.12707 * 15 14 13 17 17 C 1.39009 * 119.99912 * 354.11615 * 15 14 13 18 18 N 1.31282 * 119.99999 * 5.94184 * 17 15 14 19 19 Si 1.86793 * 119.99830 * 185.94128 * 17 15 14 20 20 H 1.48499 * 109.47425 * 94.98059 * 19 17 15 21 21 H 1.48501 * 109.47285 * 214.98476 * 19 17 15 22 22 H 1.48509 * 109.47402 * 334.98085 * 19 17 15 23 23 C 1.35787 * 126.10045 * 179.97438 * 11 10 8 24 24 C 1.47026 * 108.70129 * 335.54862 * 5 4 2 25 25 C 1.54330 * 107.26962 * 1.29222 * 24 5 4 26 26 H 1.09002 * 110.71621 * 140.55876 * 25 24 5 27 27 O 1.42898 * 110.71837 * 263.64953 * 25 24 5 28 28 H 1.08998 * 109.46988 * 183.88004 * 1 2 3 29 29 H 1.08998 * 109.46939 * 303.88263 * 1 2 3 30 30 H 1.09004 * 109.46971 * 63.87935 * 1 2 3 31 31 H 1.09003 * 110.49378 * 36.42816 * 4 2 1 32 32 H 1.09000 * 110.33890 * 274.04064 * 4 2 1 33 33 H 0.97001 * 120.00724 * 359.72605 * 10 8 6 34 34 H 1.08002 * 125.80834 * 0.02562 * 12 11 10 35 35 H 0.96997 * 120.00089 * 179.97438 * 18 17 15 36 36 H 1.08006 * 126.24788 * 0.03044 * 23 11 10 37 37 H 1.08997 * 109.88031 * 120.70234 * 24 5 4 38 38 H 1.08993 * 109.88490 * 241.71984 * 24 5 4 39 39 H 0.96709 * 113.99982 * 298.55065 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0836 -0.8124 1.2001 5 7 3.4272 -1.2434 0.7729 6 6 4.4477 -1.5622 1.5934 7 8 4.3007 -1.5009 2.7967 8 6 5.7589 -1.9907 1.0224 9 8 5.9058 -2.0524 -0.1812 10 7 6.7777 -2.3149 1.8430 11 6 8.0080 -2.7232 1.3064 12 6 8.3165 -2.8455 -0.0611 13 7 9.5577 -3.2461 -0.1700 14 7 10.0863 -3.4049 1.1174 15 6 11.3596 -3.8178 1.4228 16 1 11.6962 -3.8160 2.4490 17 6 12.2152 -4.2384 0.4112 18 7 11.8491 -4.1315 -0.8450 19 14 13.8860 -4.9557 0.8394 20 1 13.7907 -6.4368 0.8898 21 1 14.8751 -4.5582 -0.1946 22 1 14.3206 -4.4423 2.1634 23 6 9.1119 -3.0759 2.0140 24 6 3.4675 -1.2740 -0.6965 25 6 2.0861 -0.8075 -1.2025 26 1 2.1922 -0.1693 -2.0797 27 8 1.2493 -1.9287 -1.4935 28 1 -0.3633 -1.0253 0.0695 29 1 -0.3633 0.5729 0.8531 30 1 -0.3633 0.4525 -0.9227 31 1 1.4523 -1.6787 1.3982 32 1 2.1515 -0.1809 2.0859 33 1 6.6603 -2.2660 2.8047 34 1 7.6445 -2.6401 -0.8813 35 1 12.4463 -4.4247 -1.5508 36 1 9.2020 -3.0936 3.0902 37 1 4.2426 -0.5994 -1.0601 38 1 3.6677 -2.2885 -1.0408 39 1 1.5940 -2.5071 -2.1876 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116473841.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:32:20 Heat of formation + Delta-G solvation = -21.788915 kcal Electronic energy + Delta-G solvation = -24949.279832 eV Core-core repulsion = 21087.530587 eV Total energy + Delta-G solvation = -3861.749245 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.132 amu Computer time = 2.46 seconds Orbital eigenvalues (eV) -40.75562 -39.77063 -38.76718 -37.72308 -35.59258 -34.37894 -33.25295 -32.76439 -30.34555 -29.09113 -28.17861 -27.17900 -25.23045 -24.00812 -22.52820 -21.05812 -20.53423 -19.78125 -19.44546 -18.24738 -17.52407 -17.07984 -16.48639 -16.03064 -15.53728 -15.22763 -14.89199 -14.81351 -14.64979 -14.22259 -13.95049 -13.59381 -13.46456 -13.09601 -13.02150 -12.82062 -12.58796 -12.36560 -11.78406 -11.75250 -11.53571 -11.37898 -11.31555 -11.17201 -10.87383 -10.75667 -10.56216 -10.41289 -10.29999 -9.25517 -9.06790 -8.89214 -8.84763 -8.14951 -6.79836 -6.63021 -4.29819 1.64300 2.44527 2.91726 3.02590 3.07756 3.30165 3.63711 3.68670 3.78509 3.84706 4.21944 4.28738 4.34768 4.54946 4.59091 4.95252 4.97484 5.01576 5.11300 5.16454 5.35321 5.45979 5.57222 5.63378 5.74938 5.78736 5.98458 6.10259 6.18551 6.34132 6.74565 6.87225 6.90475 7.14202 7.18352 7.33570 7.67001 7.80949 8.08560 8.16081 8.46860 8.67435 9.29311 9.57530 10.33111 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.039132 B = 0.002662 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.358983 B =10515.879939 C =11093.516194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.099 4.099 3 H 0.097 0.903 4 C 0.111 3.889 5 N -0.592 5.592 6 C 0.528 3.472 7 O -0.529 6.529 8 C 0.487 3.513 9 O -0.520 6.520 10 N -0.584 5.584 11 C -0.069 4.069 12 C -0.026 4.026 13 N -0.261 5.261 14 N -0.138 5.138 15 C -0.322 4.322 16 H 0.118 0.882 17 C 0.047 3.953 18 N -0.767 5.767 19 Si 0.936 3.064 20 H -0.270 1.270 21 H -0.275 1.275 22 H -0.263 1.263 23 C -0.077 4.077 24 C 0.078 3.922 25 C 0.091 3.909 26 H 0.081 0.919 27 O -0.557 6.557 28 H 0.068 0.932 29 H 0.055 0.945 30 H 0.059 0.941 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.409 0.591 34 H 0.177 0.823 35 H 0.276 0.724 36 H 0.149 0.851 37 H 0.089 0.911 38 H 0.086 0.914 39 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.097 6.210 0.280 18.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.118 4.118 3 H 0.115 0.885 4 C -0.011 4.011 5 N -0.327 5.327 6 C 0.312 3.688 7 O -0.406 6.406 8 C 0.268 3.732 9 O -0.398 6.398 10 N -0.226 5.226 11 C -0.174 4.174 12 C -0.202 4.202 13 N -0.092 5.092 14 N 0.095 4.905 15 C -0.455 4.455 16 H 0.136 0.864 17 C -0.171 4.171 18 N -0.394 5.394 19 Si 0.760 3.240 20 H -0.196 1.196 21 H -0.201 1.201 22 H -0.187 1.187 23 C -0.228 4.228 24 C -0.045 4.045 25 C 0.031 3.969 26 H 0.098 0.902 27 O -0.363 6.363 28 H 0.087 0.913 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.095 0.905 32 H 0.100 0.900 33 H 0.244 0.756 34 H 0.194 0.806 35 H 0.086 0.914 36 H 0.167 0.833 37 H 0.107 0.893 38 H 0.104 0.896 39 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -16.324 6.089 -0.452 17.429 hybrid contribution 0.439 -0.325 0.857 1.016 sum -15.885 5.764 0.405 16.903 Atomic orbital electron populations 1.21503 0.92770 1.02985 1.01711 1.22516 0.97519 0.98580 0.93159 0.88505 1.22453 0.82211 0.98731 0.97659 1.48093 1.11599 1.65408 1.07590 1.20027 0.84633 0.78248 0.85930 1.90738 1.83044 1.52639 1.14160 1.19525 0.84676 0.82042 0.86989 1.90625 1.82071 1.52971 1.14123 1.42138 1.09600 1.61118 1.09751 1.17252 0.86116 1.20798 0.93271 1.24125 0.95372 1.06048 0.94675 1.78254 1.07931 1.23965 0.99063 1.44560 1.07818 1.35215 1.02928 1.19935 0.85741 1.44045 0.95736 0.86416 1.25670 1.00623 0.96165 0.94636 1.70211 1.35605 1.34368 0.99179 0.85787 0.79767 0.79408 0.79069 1.19572 1.20052 1.18703 1.21316 0.89922 1.16246 0.95327 1.22998 0.97904 1.03915 0.79643 1.22911 0.88534 0.88104 0.97363 0.90166 1.86469 1.49254 1.39243 1.61356 0.91324 0.92550 0.92150 0.90511 0.90014 0.75595 0.80598 0.91362 0.83327 0.89293 0.89607 0.76880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.93 8.89 37.16 0.33 -0.60 16 2 C -0.10 -0.80 3.58 -88.35 -0.32 -1.12 16 3 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 4 C 0.11 1.19 6.37 -2.41 -0.02 1.17 16 5 N -0.59 -7.86 3.32 -170.94 -0.57 -8.43 16 6 C 0.53 8.58 7.91 -11.66 -0.09 8.49 16 7 O -0.53 -9.34 16.73 5.48 0.09 -9.25 16 8 C 0.49 8.97 7.82 -11.66 -0.09 8.88 16 9 O -0.52 -10.27 11.26 5.45 0.06 -10.20 16 10 N -0.58 -11.17 5.45 -10.46 -0.06 -11.23 16 11 C -0.07 -1.58 6.90 -83.92 -0.58 -2.16 16 12 C -0.03 -0.68 10.85 -17.02 -0.18 -0.86 16 13 N -0.26 -7.45 10.41 30.81 0.32 -7.13 16 14 N -0.14 -3.75 3.73 -11.40 -0.04 -3.80 16 15 C -0.32 -8.41 10.24 -14.82 -0.15 -8.56 16 16 H 0.12 2.75 7.84 -52.49 -0.41 2.33 16 17 C 0.05 1.19 5.50 -17.50 -0.10 1.09 16 18 N -0.77 -21.04 11.84 55.50 0.66 -20.39 16 19 Si 0.94 18.63 29.56 -169.99 -5.02 13.61 16 20 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 21 H -0.28 -5.43 7.11 56.52 0.40 -5.03 16 22 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 23 C -0.08 -1.80 11.50 -16.38 -0.19 -1.99 16 24 C 0.08 0.88 5.25 -3.06 -0.02 0.86 16 25 C 0.09 0.75 4.07 -24.90 -0.10 0.64 16 26 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 27 O -0.56 -4.62 12.15 -35.23 -0.43 -5.05 16 28 H 0.07 0.56 7.46 -51.93 -0.39 0.17 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.08 0.83 7.99 -51.93 -0.41 0.42 16 32 H 0.08 0.87 8.03 -51.93 -0.42 0.45 16 33 H 0.41 6.83 8.29 -40.82 -0.34 6.49 16 34 H 0.18 4.35 5.92 -52.49 -0.31 4.04 16 35 H 0.28 6.89 8.31 -40.82 -0.34 6.55 16 36 H 0.15 2.94 8.06 -52.48 -0.42 2.51 16 37 H 0.09 1.05 7.58 -51.93 -0.39 0.66 16 38 H 0.09 1.04 7.60 -51.93 -0.39 0.64 16 39 H 0.38 1.91 9.10 45.56 0.41 2.32 16 LS Contribution 333.39 15.07 5.02 5.02 Total: -1.00 -33.33 333.39 -5.37 -38.70 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: -3.90 Total: 12.29 kcal Atomic # 6 Polarization: 7.35 SS G_CDS: -1.50 Total: 5.85 kcal Atomic # 7 Polarization: -51.28 SS G_CDS: 0.31 Total: -50.97 kcal Atomic # 8 Polarization: -24.23 SS G_CDS: -0.28 Total: -24.50 kcal Atomic # 14 Polarization: 18.63 SS G_CDS: -5.02 Total: 13.61 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -33.33 -5.37 -38.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116473841.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.915 kcal (2) G-P(sol) polarization free energy of solvation -33.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.46 seconds