Wall clock time and date at job start Fri Apr 10 2020 14:30:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.33120 * 1 3 3 F 1.35104 * 119.99580 * 2 1 4 4 C 1.47293 * 120.00041 * 179.73053 * 2 1 3 5 5 O 1.21603 * 120.00186 * 0.27163 * 4 2 1 6 6 N 1.34782 * 119.99527 * 180.27423 * 4 2 1 7 7 C 1.46499 * 119.99690 * 180.02562 * 6 4 2 8 8 C 1.54898 * 129.08565 * 299.93401 * 7 6 4 9 9 C 1.57172 * 77.91378 * 180.16552 * 8 7 6 10 10 C 1.50703 * 129.24941 * 179.19348 * 9 8 7 11 11 O 1.21287 * 119.99905 * 241.28732 * 10 9 8 12 12 N 1.34771 * 120.00196 * 61.28409 * 10 9 8 13 13 C 1.47073 * 136.05369 * 359.63318 * 12 10 9 14 14 C 1.53756 * 87.88782 * 152.95929 * 13 12 10 15 15 C 1.50695 * 114.08643 * 139.77733 * 14 13 12 16 16 H 1.08005 * 120.00090 * 266.56018 * 15 14 13 17 17 C 1.37874 * 120.00390 * 86.56305 * 15 14 13 18 18 N 1.31517 * 119.99614 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00592 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.46878 * 359.97438 * 19 17 15 21 21 H 1.48492 * 109.47194 * 119.99969 * 19 17 15 22 22 H 1.48499 * 109.47206 * 240.00174 * 19 17 15 23 23 C 1.47064 * 136.06259 * 179.97438 * 12 10 9 24 24 C 1.54411 * 129.01428 * 179.97438 * 7 6 4 25 25 C 1.54885 * 83.77227 * 317.35539 * 9 8 7 26 26 H 1.07998 * 120.00588 * 359.97438 * 1 2 3 27 27 H 1.08001 * 119.99427 * 180.02562 * 1 2 3 28 28 H 0.97000 * 120.00511 * 359.97438 * 6 4 2 29 29 H 1.09006 * 114.97390 * 291.95482 * 8 7 6 30 30 H 1.08997 * 114.97885 * 67.13742 * 8 7 6 31 31 H 1.09002 * 113.46752 * 267.69172 * 13 12 10 32 32 H 1.08994 * 113.46815 * 38.13192 * 13 12 10 33 33 H 1.08997 * 114.39914 * 272.67857 * 14 13 12 34 34 H 0.96996 * 120.00139 * 179.97438 * 18 17 15 35 35 H 1.09005 * 113.46669 * 321.87292 * 23 12 10 36 36 H 1.09002 * 113.46843 * 92.30302 * 23 12 10 37 37 H 1.08996 * 114.93180 * 293.13039 * 24 7 6 38 38 H 1.09007 * 114.93250 * 68.09414 * 24 7 6 39 39 H 1.08999 * 116.12271 * 290.12163 * 25 9 8 40 40 H 1.09005 * 113.82713 * 154.96519 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3312 0.0000 0.0000 3 9 2.0066 1.1701 0.0000 4 6 2.0677 -1.2756 0.0060 5 8 1.4597 -2.3287 0.0060 6 7 3.4155 -1.2754 0.0116 7 6 4.1480 -2.5441 0.0170 8 6 4.1125 -3.6879 1.0609 9 6 5.1421 -4.2358 0.0073 10 6 5.9152 -5.5294 0.0132 11 8 7.1278 -5.5111 0.0333 12 7 5.2593 -6.7066 -0.0038 13 6 3.8524 -7.1347 -0.0226 14 6 4.3127 -8.4216 -0.7270 15 6 3.6118 -9.6678 -0.2508 16 1 4.0487 -10.2662 0.5350 17 6 2.4129 -10.0441 -0.8182 18 7 1.8812 -9.3157 -1.7754 19 14 1.5445 -11.5892 -0.2283 20 1 2.3448 -12.2264 0.8481 21 1 0.2022 -11.2326 0.2970 22 1 1.3967 -12.5372 -1.3617 23 6 5.6352 -8.1284 -0.0056 24 6 5.6731 -2.7860 0.0232 25 6 4.1211 -3.6920 -1.0226 26 1 -0.5401 0.9352 0.0004 27 1 -0.5399 -0.9354 0.0004 28 1 3.9005 -0.4354 0.0113 29 1 4.5429 -3.4392 2.0310 30 1 3.1661 -4.2251 1.1230 31 1 3.4381 -7.3080 0.9706 32 1 3.2149 -6.5036 -0.6416 33 1 4.3696 -8.3449 -1.8128 34 1 1.0379 -9.5806 -2.1749 35 1 6.5164 -8.3437 -0.6101 36 1 5.6913 -8.5638 0.9921 37 1 6.1911 -2.4764 -0.8844 38 1 6.1812 -2.4918 0.9416 39 1 3.1752 -4.2294 -1.0905 40 1 4.5595 -3.4471 -1.9901 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270956281.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:30:20 Heat of formation + Delta-G solvation = 24.889893 kcal Electronic energy + Delta-G solvation = -24957.548168 eV Core-core repulsion = 21077.903107 eV Total energy + Delta-G solvation = -3879.645062 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.132 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.95054 -43.29416 -40.89424 -40.32818 -38.59533 -35.06953 -34.65318 -33.30872 -31.17947 -27.77255 -27.01387 -26.93197 -26.66139 -26.26700 -24.52396 -22.05402 -21.18597 -20.41762 -19.49961 -19.28845 -18.72039 -18.07621 -17.39057 -16.97852 -16.85018 -16.61673 -16.18417 -16.05563 -15.65778 -15.48163 -15.29728 -15.19168 -14.92982 -14.21045 -14.07851 -13.79905 -13.54962 -13.30140 -13.25965 -13.00918 -12.78688 -12.75119 -12.49880 -12.31340 -12.19271 -11.67299 -11.59614 -11.46551 -11.21509 -11.06020 -10.80920 -10.59988 -10.54750 -10.27340 -9.62801 -8.17055 -6.28559 0.07178 1.34157 1.45823 1.46744 1.49804 1.60130 1.83526 1.94163 2.45852 2.88698 3.03993 3.12429 3.13106 3.25091 3.28207 3.36507 3.49334 3.79056 4.22554 4.36040 4.40203 4.44746 4.52104 4.52540 4.57715 4.68220 4.69243 4.71367 4.74717 4.75539 4.82485 4.86020 4.98725 5.03982 5.23223 5.36695 5.57935 5.80507 6.21792 6.23512 6.79543 6.80979 6.86139 7.09032 7.41812 8.93168 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.014695 B = 0.003498 C = 0.002908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.908754 B = 8002.055714 C = 9627.086129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.020 4.020 3 F -0.137 7.137 4 C 0.543 3.457 5 O -0.545 6.545 6 N -0.657 5.657 7 C 0.112 3.888 8 C -0.096 4.096 9 C -0.168 4.168 10 C 0.594 3.406 11 O -0.585 6.585 12 N -0.637 5.637 13 C 0.116 3.884 14 C 0.024 3.976 15 C -0.527 4.527 16 H 0.069 0.931 17 C 0.020 3.980 18 N -0.919 5.919 19 Si 0.959 3.041 20 H -0.262 1.262 21 H -0.282 1.282 22 H -0.283 1.283 23 C 0.108 3.892 24 C -0.060 4.060 25 C -0.102 4.102 26 H 0.163 0.837 27 H 0.139 0.861 28 H 0.428 0.572 29 H 0.096 0.904 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.052 0.948 33 H 0.040 0.960 34 H 0.264 0.736 35 H 0.062 0.938 36 H 0.088 0.912 37 H 0.098 0.902 38 H 0.104 0.896 39 H 0.066 0.934 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.254 20.789 4.445 21.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.042 4.042 3 F -0.116 7.116 4 C 0.331 3.669 5 O -0.423 6.423 6 N -0.307 5.307 7 C 0.023 3.977 8 C -0.135 4.135 9 C -0.172 4.172 10 C 0.385 3.615 11 O -0.467 6.467 12 N -0.368 5.368 13 C -0.006 4.006 14 C 0.005 3.995 15 C -0.565 4.565 16 H 0.087 0.913 17 C -0.180 4.180 18 N -0.557 5.557 19 Si 0.785 3.215 20 H -0.186 1.186 21 H -0.207 1.207 22 H -0.209 1.209 23 C -0.014 4.014 24 C -0.098 4.098 25 C -0.141 4.141 26 H 0.180 0.820 27 H 0.157 0.843 28 H 0.267 0.733 29 H 0.115 0.885 30 H 0.088 0.912 31 H 0.097 0.903 32 H 0.070 0.930 33 H 0.058 0.942 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.106 0.894 37 H 0.117 0.883 38 H 0.122 0.878 39 H 0.085 0.915 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -1.058 20.346 4.343 20.831 hybrid contribution -0.311 -0.441 -0.042 0.541 sum -1.369 19.905 4.300 20.410 Atomic orbital electron populations 1.25302 0.92571 1.07303 0.88977 1.19504 0.91949 0.79617 1.13114 1.91527 1.80763 1.44598 1.94723 1.18856 0.82370 0.89377 0.76341 1.90911 1.68546 1.32649 1.50238 1.44403 1.05170 1.07502 1.73610 1.22498 0.94060 0.84522 0.96650 1.24822 0.97114 0.94488 0.97062 1.23529 0.98421 0.93256 1.02006 1.18330 0.85721 0.82201 0.75291 1.90625 1.14677 1.87409 1.53952 1.49885 1.11632 1.05340 1.69977 1.23401 0.81155 0.95688 1.00389 1.20271 0.91113 0.93109 0.95035 1.21243 1.05885 1.08862 1.20523 0.91275 1.25788 0.98057 0.99630 0.94527 1.70077 1.19357 1.40085 1.26180 0.85479 0.78327 0.79346 0.78358 1.18586 1.20742 1.20872 1.23272 0.99518 0.77567 1.01052 1.23909 0.92071 0.89051 1.04811 1.24380 0.97310 0.95059 0.97332 0.81964 0.84283 0.73271 0.88520 0.91194 0.90293 0.92981 0.94224 0.92694 0.91979 0.89371 0.88338 0.87792 0.91512 0.89500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.20 14.27 66.67 0.95 -0.25 16 2 C -0.02 -0.32 7.42 23.50 0.17 -0.14 16 3 F -0.14 -2.00 16.74 44.97 0.75 -1.25 16 4 C 0.54 12.23 7.77 86.62 0.67 12.91 16 5 O -0.55 -16.81 16.10 -4.04 -0.07 -16.87 16 6 N -0.66 -12.63 5.71 -478.20 -2.73 -15.36 16 7 C 0.11 2.64 3.79 -7.15 -0.03 2.62 16 8 C -0.10 -2.65 7.88 31.91 0.25 -2.40 16 9 C -0.17 -5.26 3.33 -62.86 -0.21 -5.47 16 10 C 0.59 23.70 8.19 87.66 0.72 24.41 16 11 O -0.58 -26.13 17.87 -3.05 -0.05 -26.18 16 12 N -0.64 -26.53 3.69 -857.79 -3.16 -29.69 16 13 C 0.12 5.09 7.99 83.26 0.67 5.76 16 14 C 0.02 1.16 3.80 -11.13 -0.04 1.12 16 15 C -0.53 -27.01 8.82 25.60 0.23 -26.78 16 16 H 0.07 3.41 7.81 -2.91 -0.02 3.38 16 17 C 0.02 1.06 5.46 84.65 0.46 1.52 16 18 N -0.92 -51.33 13.26 21.45 0.28 -51.04 16 19 Si 0.96 41.32 29.54 68.60 2.03 43.35 16 20 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 21 H -0.28 -11.99 7.11 99.48 0.71 -11.29 16 22 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 23 C 0.11 4.53 8.17 83.17 0.68 5.21 16 24 C -0.06 -1.36 7.78 30.61 0.24 -1.12 16 25 C -0.10 -3.01 7.77 31.06 0.24 -2.77 16 26 H 0.16 0.83 8.06 -2.91 -0.02 0.80 16 27 H 0.14 1.86 7.50 -2.91 -0.02 1.84 16 28 H 0.43 5.44 8.38 -92.71 -0.78 4.66 16 29 H 0.10 2.29 7.91 -2.38 -0.02 2.28 16 30 H 0.07 2.24 7.97 -2.39 -0.02 2.22 16 31 H 0.08 3.37 8.10 -2.39 -0.02 3.35 16 32 H 0.05 2.36 7.83 -2.39 -0.02 2.34 16 33 H 0.04 2.13 8.11 -2.39 -0.02 2.11 16 34 H 0.26 14.03 8.31 -92.71 -0.77 13.26 16 35 H 0.06 2.55 8.14 -2.38 -0.02 2.53 16 36 H 0.09 3.47 8.10 -2.39 -0.02 3.45 16 37 H 0.10 1.98 7.94 -2.39 -0.02 1.96 16 38 H 0.10 1.98 7.91 -2.38 -0.02 1.96 16 39 H 0.07 2.33 7.66 -2.39 -0.02 2.31 16 40 H 0.09 2.37 7.93 -2.38 -0.02 2.35 16 Total: -1.00 -66.76 354.33 2.35 -64.41 By element: Atomic # 1 Polarization: 17.74 SS G_CDS: 0.30 Total: 18.03 kcal Atomic # 6 Polarization: 9.61 SS G_CDS: 5.00 Total: 14.61 kcal Atomic # 7 Polarization: -90.49 SS G_CDS: -5.61 Total: -96.09 kcal Atomic # 8 Polarization: -42.94 SS G_CDS: -0.12 Total: -43.06 kcal Atomic # 9 Polarization: -2.00 SS G_CDS: 0.75 Total: -1.25 kcal Atomic # 14 Polarization: 41.32 SS G_CDS: 2.03 Total: 43.35 kcal Total: -66.76 2.35 -64.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270956281.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.297 kcal (2) G-P(sol) polarization free energy of solvation -66.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds