Wall clock time and date at job start Fri Apr 10 2020 14:30:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.33113 * 1 3 3 F 1.35104 * 120.00087 * 2 1 4 4 C 1.47302 * 119.99972 * 179.97438 * 2 1 3 5 5 O 1.21607 * 120.00004 * 0.02562 * 4 2 1 6 6 N 1.34776 * 120.00091 * 179.97438 * 4 2 1 7 7 C 1.49871 * 127.93336 * 3.76268 * 6 4 2 8 8 C 1.54938 * 103.40210 * 219.93488 * 7 6 4 9 9 C 1.54581 * 102.85561 * 322.44447 * 8 7 6 10 10 H 1.09004 * 118.12024 * 242.38595 * 9 8 7 11 11 C 1.52932 * 118.20259 * 85.43147 * 9 8 7 12 12 C 1.47527 * 127.04803 * 184.57479 * 6 4 2 13 13 C 1.50703 * 117.36941 * 295.07297 * 12 6 4 14 14 O 1.21286 * 119.99895 * 172.92278 * 13 12 6 15 15 N 1.34778 * 120.00019 * 352.90745 * 13 12 6 16 16 C 1.47576 * 134.49202 * 174.71160 * 15 13 12 17 17 C 1.53939 * 86.24162 * 155.43276 * 16 15 13 18 18 C 1.50704 * 113.74489 * 137.89462 * 17 16 15 19 19 H 1.07998 * 119.99771 * 0.02562 * 18 17 16 20 20 C 1.37869 * 120.00140 * 179.97438 * 18 17 16 21 21 N 1.31514 * 120.00414 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00080 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.47035 * 90.00171 * 22 20 18 24 24 H 1.48493 * 109.47384 * 210.00142 * 22 20 18 25 25 H 1.48502 * 109.46908 * 330.00573 * 22 20 18 26 26 C 1.47811 * 134.58328 * 354.67603 * 15 13 12 27 27 H 1.07994 * 119.99896 * 180.02562 * 1 2 3 28 28 H 1.07998 * 120.00069 * 0.02562 * 1 2 3 29 29 H 1.09000 * 110.70286 * 101.39271 * 7 6 4 30 30 H 1.08998 * 110.62773 * 338.43720 * 7 6 4 31 31 H 1.09002 * 110.73666 * 204.10484 * 8 7 6 32 32 H 1.08994 * 110.73943 * 80.78585 * 8 7 6 33 33 H 1.08995 * 117.46083 * 160.76461 * 11 9 8 34 34 H 1.09007 * 117.45246 * 15.98932 * 11 9 8 35 35 H 1.09003 * 113.76674 * 41.07580 * 16 15 13 36 36 H 1.09006 * 113.77008 * 269.78824 * 16 15 13 37 37 H 1.08997 * 113.74274 * 269.21069 * 17 16 15 38 38 H 0.97000 * 120.00649 * 180.02562 * 21 20 18 39 39 H 1.08997 * 113.66887 * 90.26017 * 26 15 13 40 40 H 1.08995 * 113.93497 * 318.91351 * 26 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3311 0.0000 0.0000 3 9 2.0067 1.1700 0.0000 4 6 2.0676 -1.2757 0.0006 5 8 1.4596 -2.3288 0.0006 6 7 3.4154 -1.2757 0.0000 7 6 4.3368 -0.0961 0.0765 8 6 5.4687 -0.4596 -0.9172 9 6 5.6381 -1.9812 -0.7038 10 1 6.5971 -2.3445 -0.3342 11 6 4.7251 -2.9268 -1.4855 12 6 4.3042 -2.4495 -0.0934 13 6 4.2693 -3.4372 1.0443 14 8 4.8813 -4.4810 0.9601 15 7 3.5584 -3.1606 2.1553 16 6 3.2262 -3.9083 3.3835 17 6 3.0516 -2.5329 4.0525 18 6 1.8510 -2.4472 4.9593 19 1 1.2091 -3.3061 5.0880 20 6 1.5726 -1.2725 5.6253 21 7 2.3545 -0.2267 5.4689 22 14 0.0848 -1.1665 6.7499 23 1 0.4755 -1.5638 8.1264 24 1 -0.4270 0.2274 6.7635 25 1 -0.9767 -2.0788 6.2537 26 6 2.7982 -1.9873 2.6354 27 1 -0.5400 -0.9353 0.0004 28 1 -0.5400 0.9353 -0.0004 29 1 4.7329 0.0187 1.0854 30 1 3.8245 0.8124 -0.2399 31 1 6.3876 0.0700 -0.6659 32 1 5.1662 -0.2450 -1.9421 33 1 5.0438 -3.9643 -1.5861 34 1 4.1896 -2.5152 -2.3411 35 1 4.0579 -4.4888 3.7829 36 1 2.3024 -4.4825 3.3120 37 1 3.9622 -2.1504 4.5135 38 1 2.1589 0.5997 5.9378 39 1 1.7484 -1.9964 2.3424 40 1 3.2865 -1.0331 2.4381 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001270957112.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:30:08 Heat of formation + Delta-G solvation = -3.771715 kcal Electronic energy + Delta-G solvation = -26936.515503 eV Core-core repulsion = 23055.627581 eV Total energy + Delta-G solvation = -3880.887923 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.132 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.03212 -40.86529 -38.74509 -38.32874 -36.68637 -33.08619 -32.63289 -32.18865 -30.66252 -29.08099 -25.74214 -25.13503 -24.72171 -23.48980 -22.37235 -20.97868 -20.06505 -19.58701 -18.49315 -17.35785 -16.83575 -16.56595 -16.08406 -15.83462 -15.58110 -15.02141 -14.78593 -14.51180 -14.35882 -14.09251 -13.91008 -13.66281 -13.23234 -12.82923 -12.75445 -12.42381 -12.38827 -12.08825 -11.97792 -11.47141 -11.24244 -11.05051 -10.97150 -10.82175 -10.70065 -10.39742 -10.37230 -9.94410 -9.63823 -9.49842 -9.27597 -9.12917 -8.64167 -8.44210 -7.79668 -6.17429 -4.22128 1.17302 2.56713 2.77644 3.09590 3.23753 3.30892 3.34375 3.49872 3.77024 4.02557 4.33485 4.39937 4.51530 4.64459 4.86483 4.98890 5.04906 5.13618 5.16087 5.43179 5.46293 5.61013 5.63340 5.70403 5.71600 5.79058 5.99374 6.09230 6.11495 6.23359 6.31831 6.40774 6.42299 6.62681 6.66629 6.83568 7.40910 7.55600 7.80006 8.00444 8.18548 8.51204 8.77354 8.80787 9.44038 10.92286 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.013863 B = 0.006056 C = 0.004947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2019.342116 B = 4622.368271 C = 5659.080329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.007 3.993 3 F -0.136 7.136 4 C 0.570 3.430 5 O -0.506 6.506 6 N -0.584 5.584 7 C 0.085 3.915 8 C -0.105 4.105 9 C -0.130 4.130 10 H 0.130 0.870 11 C -0.116 4.116 12 C 0.056 3.944 13 C 0.568 3.432 14 O -0.564 6.564 15 N -0.623 5.623 16 C 0.105 3.895 17 C 0.033 3.967 18 C -0.516 4.516 19 H 0.063 0.937 20 C 0.068 3.932 21 N -0.887 5.887 22 Si 0.894 3.106 23 H -0.279 1.279 24 H -0.286 1.286 25 H -0.272 1.272 26 C 0.111 3.889 27 H 0.143 0.857 28 H 0.129 0.871 29 H 0.085 0.915 30 H 0.108 0.892 31 H 0.093 0.907 32 H 0.079 0.921 33 H 0.118 0.882 34 H 0.101 0.899 35 H 0.061 0.939 36 H 0.074 0.926 37 H 0.064 0.936 38 H 0.263 0.737 39 H 0.073 0.927 40 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.422 4.915 -13.579 14.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.015 4.015 3 F -0.115 7.115 4 C 0.358 3.642 5 O -0.382 6.382 6 N -0.318 5.318 7 C -0.036 4.036 8 C -0.143 4.143 9 C -0.149 4.149 10 H 0.148 0.852 11 C -0.155 4.155 12 C -0.034 4.034 13 C 0.356 3.644 14 O -0.445 6.445 15 N -0.354 5.354 16 C -0.017 4.017 17 C 0.014 3.986 18 C -0.554 4.554 19 H 0.081 0.919 20 C -0.135 4.135 21 N -0.524 5.524 22 Si 0.721 3.279 23 H -0.205 1.205 24 H -0.211 1.211 25 H -0.197 1.197 26 C -0.012 4.012 27 H 0.161 0.839 28 H 0.147 0.853 29 H 0.103 0.897 30 H 0.125 0.875 31 H 0.111 0.889 32 H 0.098 0.902 33 H 0.136 0.864 34 H 0.119 0.881 35 H 0.080 0.920 36 H 0.092 0.908 37 H 0.082 0.918 38 H 0.073 0.927 39 H 0.091 0.909 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.436 4.013 -13.679 14.463 hybrid contribution -0.774 0.527 0.682 1.158 sum 1.662 4.540 -12.997 13.867 Atomic orbital electron populations 1.24887 0.93135 1.05778 0.93506 1.19779 0.91595 0.80491 1.09598 1.91387 1.80045 1.45645 1.94374 1.17882 0.80490 0.88786 0.77008 1.90892 1.66758 1.31179 1.49373 1.48537 1.03733 1.07313 1.72259 1.23565 0.89971 0.89309 1.00785 1.22420 0.99127 0.92847 0.99926 1.23756 0.93794 0.94511 1.02831 0.85194 1.23403 0.99327 1.00549 0.92209 1.21619 0.93982 0.92010 0.95779 1.18757 0.79589 0.85294 0.80804 1.90636 1.46912 1.26266 1.80703 1.50229 1.48346 1.20138 1.16718 1.23506 0.98608 0.98482 0.81088 1.20514 0.98585 0.88575 0.90909 1.20964 1.09847 0.98171 1.26464 0.91894 1.25001 0.96616 0.95690 0.96174 1.69948 1.37610 1.02388 1.42439 0.86562 0.82886 0.77367 0.81076 1.20462 1.21133 1.19672 1.23791 0.94386 0.87556 0.95420 0.83937 0.85266 0.89666 0.87450 0.88878 0.90196 0.86379 0.88052 0.92015 0.90761 0.91828 0.92728 0.90906 0.92418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.64 14.27 28.95 0.41 -1.22 16 2 C 0.01 0.11 7.34 -37.68 -0.28 -0.17 16 3 F -0.14 -1.85 13.99 2.25 0.03 -1.82 16 4 C 0.57 9.89 5.28 -12.58 -0.07 9.82 16 5 O -0.51 -10.32 15.59 5.27 0.08 -10.23 16 6 N -0.58 -9.37 1.81 -156.14 -0.28 -9.65 16 7 C 0.08 1.07 6.50 -1.14 -0.01 1.06 16 8 C -0.11 -1.04 6.86 -24.88 -0.17 -1.21 16 9 C -0.13 -1.62 6.92 -89.31 -0.62 -2.24 16 10 H 0.13 1.56 8.14 -51.93 -0.42 1.14 16 11 C -0.12 -1.58 9.82 -26.73 -0.26 -1.84 16 12 C 0.06 0.94 2.46 -131.86 -0.33 0.61 16 13 C 0.57 12.15 7.89 -10.98 -0.09 12.07 16 14 O -0.56 -13.19 17.33 5.55 0.10 -13.10 16 15 N -0.62 -13.95 3.62 -177.45 -0.64 -14.59 16 16 C 0.10 2.36 8.38 -2.98 -0.02 2.34 16 17 C 0.03 0.82 3.62 -90.83 -0.33 0.49 16 18 C -0.52 -13.57 8.77 -34.44 -0.30 -13.87 16 19 H 0.06 1.64 7.81 -52.49 -0.41 1.22 16 20 C 0.07 1.80 5.46 -17.82 -0.10 1.71 16 21 N -0.89 -24.18 13.27 55.43 0.74 -23.45 16 22 Si 0.89 20.37 29.54 -169.99 -5.02 15.34 16 23 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 24 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 25 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 26 C 0.11 2.53 5.45 -2.85 -0.02 2.51 16 27 H 0.14 1.76 7.50 -52.49 -0.39 1.36 16 28 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 29 H 0.09 1.17 7.67 -51.93 -0.40 0.77 16 30 H 0.11 1.22 5.30 -51.93 -0.28 0.95 16 31 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.12 1.63 7.91 -51.93 -0.41 1.22 16 34 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 36 H 0.07 1.66 8.09 -51.93 -0.42 1.24 16 37 H 0.06 1.68 8.13 -51.93 -0.42 1.25 16 38 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 39 H 0.07 1.76 6.56 -51.93 -0.34 1.42 16 40 H 0.06 1.30 6.66 -51.93 -0.35 0.96 16 LS Contribution 338.21 15.07 5.10 5.10 Total: -1.00 -31.83 338.21 -7.16 -38.99 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -5.09 Total: 3.35 kcal Atomic # 6 Polarization: 12.23 SS G_CDS: -2.17 Total: 10.06 kcal Atomic # 7 Polarization: -47.50 SS G_CDS: -0.19 Total: -47.68 kcal Atomic # 8 Polarization: -23.51 SS G_CDS: 0.18 Total: -23.33 kcal Atomic # 9 Polarization: -1.85 SS G_CDS: 0.03 Total: -1.82 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.83 -7.16 -38.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270957112.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.217 kcal (2) G-P(sol) polarization free energy of solvation -31.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds