Wall clock time and date at job start Fri Apr 10 2020 14:30:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.33113 * 1 3 3 F 1.35104 * 120.00087 * 2 1 4 4 C 1.47302 * 119.99972 * 179.97438 * 2 1 3 5 5 O 1.21607 * 120.00004 * 0.02562 * 4 2 1 6 6 N 1.34776 * 120.00091 * 179.97438 * 4 2 1 7 7 C 1.49871 * 127.93336 * 3.76268 * 6 4 2 8 8 C 1.54938 * 103.40210 * 219.93488 * 7 6 4 9 9 C 1.54581 * 102.85561 * 322.44447 * 8 7 6 10 10 H 1.09004 * 118.12024 * 242.38595 * 9 8 7 11 11 C 1.52932 * 118.20259 * 85.43147 * 9 8 7 12 12 C 1.47527 * 127.04803 * 184.57479 * 6 4 2 13 13 C 1.50703 * 117.36941 * 295.07297 * 12 6 4 14 14 O 1.21286 * 119.99895 * 172.92278 * 13 12 6 15 15 N 1.34778 * 120.00019 * 352.90745 * 13 12 6 16 16 C 1.47576 * 134.49202 * 174.71160 * 15 13 12 17 17 C 1.53939 * 86.24162 * 155.43276 * 16 15 13 18 18 C 1.50704 * 113.74489 * 137.89462 * 17 16 15 19 19 H 1.07998 * 119.99771 * 0.02562 * 18 17 16 20 20 C 1.37869 * 120.00140 * 179.97438 * 18 17 16 21 21 N 1.31514 * 120.00414 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00080 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.47035 * 90.00171 * 22 20 18 24 24 H 1.48493 * 109.47384 * 210.00142 * 22 20 18 25 25 H 1.48502 * 109.46908 * 330.00573 * 22 20 18 26 26 C 1.47811 * 134.58328 * 354.67603 * 15 13 12 27 27 H 1.07994 * 119.99896 * 180.02562 * 1 2 3 28 28 H 1.07998 * 120.00069 * 0.02562 * 1 2 3 29 29 H 1.09000 * 110.70286 * 101.39271 * 7 6 4 30 30 H 1.08998 * 110.62773 * 338.43720 * 7 6 4 31 31 H 1.09002 * 110.73666 * 204.10484 * 8 7 6 32 32 H 1.08994 * 110.73943 * 80.78585 * 8 7 6 33 33 H 1.08995 * 117.46083 * 160.76461 * 11 9 8 34 34 H 1.09007 * 117.45246 * 15.98932 * 11 9 8 35 35 H 1.09003 * 113.76674 * 41.07580 * 16 15 13 36 36 H 1.09006 * 113.77008 * 269.78824 * 16 15 13 37 37 H 1.08997 * 113.74274 * 269.21069 * 17 16 15 38 38 H 0.97000 * 120.00649 * 180.02562 * 21 20 18 39 39 H 1.08997 * 113.66887 * 90.26017 * 26 15 13 40 40 H 1.08995 * 113.93497 * 318.91351 * 26 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3311 0.0000 0.0000 3 9 2.0067 1.1700 0.0000 4 6 2.0676 -1.2757 0.0006 5 8 1.4596 -2.3288 0.0006 6 7 3.4154 -1.2757 0.0000 7 6 4.3368 -0.0961 0.0765 8 6 5.4687 -0.4596 -0.9172 9 6 5.6381 -1.9812 -0.7038 10 1 6.5971 -2.3445 -0.3342 11 6 4.7251 -2.9268 -1.4855 12 6 4.3042 -2.4495 -0.0934 13 6 4.2693 -3.4372 1.0443 14 8 4.8813 -4.4810 0.9601 15 7 3.5584 -3.1606 2.1553 16 6 3.2262 -3.9083 3.3835 17 6 3.0516 -2.5329 4.0525 18 6 1.8510 -2.4472 4.9593 19 1 1.2091 -3.3061 5.0880 20 6 1.5726 -1.2725 5.6253 21 7 2.3545 -0.2267 5.4689 22 14 0.0848 -1.1665 6.7499 23 1 0.4755 -1.5638 8.1264 24 1 -0.4270 0.2274 6.7635 25 1 -0.9767 -2.0788 6.2537 26 6 2.7982 -1.9873 2.6354 27 1 -0.5400 -0.9353 0.0004 28 1 -0.5400 0.9353 -0.0004 29 1 4.7329 0.0187 1.0854 30 1 3.8245 0.8124 -0.2399 31 1 6.3876 0.0700 -0.6659 32 1 5.1662 -0.2450 -1.9421 33 1 5.0438 -3.9643 -1.5861 34 1 4.1896 -2.5152 -2.3411 35 1 4.0579 -4.4888 3.7829 36 1 2.3024 -4.4825 3.3120 37 1 3.9622 -2.1504 4.5135 38 1 2.1589 0.5997 5.9378 39 1 1.7484 -1.9964 2.3424 40 1 3.2865 -1.0331 2.4381 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270957112.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:30:07 Heat of formation + Delta-G solvation = -23.294331 kcal Electronic energy + Delta-G solvation = -26937.362067 eV Core-core repulsion = 23055.627581 eV Total energy + Delta-G solvation = -3881.734487 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.132 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -50.07434 -42.17592 -40.35114 -39.72278 -38.36992 -34.70797 -34.21738 -33.26250 -31.81889 -30.79493 -27.50070 -27.00628 -26.08088 -24.53692 -23.81306 -22.17613 -21.39207 -21.05586 -19.83941 -19.00877 -18.57736 -17.99492 -17.39725 -17.18587 -16.80093 -16.63813 -16.24225 -16.13383 -15.74367 -15.36061 -15.04552 -14.99358 -14.85998 -14.15317 -13.92706 -13.82985 -13.72893 -13.51845 -13.30318 -13.15766 -12.93626 -12.81782 -12.64880 -12.26459 -12.06835 -11.98538 -11.58949 -11.32381 -11.23610 -11.19363 -10.78628 -10.61464 -10.56055 -9.81859 -9.62409 -8.20066 -6.31641 0.08032 1.22708 1.43676 1.45313 1.48957 1.55378 1.81745 1.94039 2.42385 2.51161 2.90297 3.09359 3.25235 3.36093 3.52684 3.69210 3.83019 4.10323 4.17775 4.24510 4.32602 4.39509 4.44637 4.48998 4.53561 4.59821 4.65559 4.68013 4.68139 4.73174 4.83824 4.92800 4.97624 5.04832 5.20697 5.38992 5.50491 5.75052 6.16444 6.21938 6.73489 6.74210 6.77118 7.05873 7.37678 8.89731 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.013863 B = 0.006056 C = 0.004947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2019.342116 B = 4622.368271 C = 5659.080329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.019 4.019 3 F -0.131 7.131 4 C 0.560 3.440 5 O -0.552 6.552 6 N -0.583 5.583 7 C 0.078 3.922 8 C -0.090 4.090 9 C -0.097 4.097 10 H 0.137 0.863 11 C -0.102 4.102 12 C 0.010 3.990 13 C 0.558 3.442 14 O -0.592 6.592 15 N -0.631 5.631 16 C 0.107 3.893 17 C 0.028 3.972 18 C -0.535 4.535 19 H 0.060 0.940 20 C 0.026 3.974 21 N -0.913 5.913 22 Si 0.957 3.043 23 H -0.275 1.275 24 H -0.279 1.279 25 H -0.269 1.269 26 C 0.138 3.862 27 H 0.138 0.862 28 H 0.164 0.836 29 H 0.069 0.931 30 H 0.122 0.878 31 H 0.124 0.876 32 H 0.104 0.896 33 H 0.112 0.888 34 H 0.122 0.878 35 H 0.067 0.933 36 H 0.073 0.927 37 H 0.040 0.960 38 H 0.266 0.734 39 H 0.058 0.942 40 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.339 6.608 -14.795 16.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.041 4.041 3 F -0.110 7.110 4 C 0.350 3.650 5 O -0.431 6.431 6 N -0.316 5.316 7 C -0.041 4.041 8 C -0.128 4.128 9 C -0.117 4.117 10 H 0.155 0.845 11 C -0.141 4.141 12 C -0.080 4.080 13 C 0.348 3.652 14 O -0.475 6.475 15 N -0.362 5.362 16 C -0.015 4.015 17 C 0.008 3.992 18 C -0.573 4.573 19 H 0.078 0.922 20 C -0.175 4.175 21 N -0.550 5.550 22 Si 0.782 3.218 23 H -0.200 1.200 24 H -0.204 1.204 25 H -0.193 1.193 26 C 0.016 3.984 27 H 0.157 0.843 28 H 0.182 0.818 29 H 0.088 0.912 30 H 0.140 0.860 31 H 0.142 0.858 32 H 0.122 0.878 33 H 0.130 0.870 34 H 0.140 0.860 35 H 0.086 0.914 36 H 0.092 0.908 37 H 0.058 0.942 38 H 0.075 0.925 39 H 0.076 0.924 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.387 5.731 -14.911 16.151 hybrid contribution -0.727 -0.043 1.062 1.288 sum 1.660 5.687 -13.849 15.063 Atomic orbital electron populations 1.25241 0.92396 1.07247 0.89577 1.19591 0.92045 0.79784 1.12675 1.91387 1.80057 1.44881 1.94693 1.18408 0.80981 0.89330 0.76301 1.90851 1.67752 1.32795 1.51710 1.48688 1.03696 1.07963 1.71269 1.23772 0.90518 0.88860 1.00979 1.22503 0.99301 0.90567 1.00409 1.24047 0.91998 0.96190 0.99445 0.84495 1.23497 0.98940 1.00841 0.90805 1.21629 0.97686 0.92925 0.95728 1.19620 0.78278 0.85986 0.81267 1.90598 1.47837 1.27736 1.81318 1.50261 1.48847 1.19749 1.17361 1.23383 0.98858 0.97720 0.81581 1.20408 0.97186 0.90001 0.91566 1.21197 1.10401 0.98430 1.27289 0.92170 1.25714 0.99178 0.95225 0.97385 1.70040 1.38995 1.02815 1.43187 0.85577 0.79585 0.77545 0.79124 1.20022 1.20418 1.19333 1.23327 0.93490 0.87560 0.94068 0.84348 0.81800 0.91245 0.86008 0.85799 0.87777 0.87007 0.86023 0.91426 0.90849 0.94200 0.92476 0.92413 0.92541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.41 14.27 66.67 0.95 -1.46 16 2 C -0.02 -0.54 7.34 23.50 0.17 -0.36 16 3 F -0.13 -3.36 13.99 44.97 0.63 -2.73 16 4 C 0.56 19.46 5.28 86.63 0.46 19.92 16 5 O -0.55 -23.06 15.59 -4.05 -0.06 -23.12 16 6 N -0.58 -18.36 1.81 -766.15 -1.39 -19.75 16 7 C 0.08 1.85 6.50 86.38 0.56 2.41 16 8 C -0.09 -1.44 6.86 31.80 0.22 -1.23 16 9 C -0.10 -2.21 6.92 -9.94 -0.07 -2.27 16 10 H 0.14 2.94 8.14 -2.38 -0.02 2.92 16 11 C -0.10 -2.60 9.82 30.59 0.30 -2.30 16 12 C 0.01 0.33 2.46 3.02 0.01 0.34 16 13 C 0.56 24.35 7.89 87.66 0.69 25.05 16 14 O -0.59 -28.24 17.33 -3.05 -0.05 -28.29 16 15 N -0.63 -29.13 3.62 -833.71 -3.02 -32.15 16 16 C 0.11 4.99 8.38 86.48 0.72 5.71 16 17 C 0.03 1.41 3.62 -10.88 -0.04 1.37 16 18 C -0.54 -28.69 8.77 25.60 0.22 -28.47 16 19 H 0.06 3.18 7.81 -2.91 -0.02 3.16 16 20 C 0.03 1.36 5.46 84.65 0.46 1.83 16 21 N -0.91 -50.10 13.27 21.44 0.28 -49.81 16 22 Si 0.96 41.61 29.54 68.60 2.03 43.64 16 23 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 24 H -0.28 -11.76 7.11 99.48 0.71 -11.06 16 25 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 26 C 0.14 6.51 5.45 86.44 0.47 6.98 16 27 H 0.14 3.30 7.50 -2.91 -0.02 3.28 16 28 H 0.16 2.52 8.06 -2.91 -0.02 2.49 16 29 H 0.07 1.85 7.67 -2.39 -0.02 1.83 16 30 H 0.12 2.51 5.30 -2.39 -0.01 2.49 16 31 H 0.12 1.31 8.14 -2.39 -0.02 1.30 16 32 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.11 2.98 7.91 -2.39 -0.02 2.96 16 34 H 0.12 2.58 8.14 -2.38 -0.02 2.56 16 35 H 0.07 3.02 8.14 -2.39 -0.02 3.00 16 36 H 0.07 3.40 8.09 -2.38 -0.02 3.38 16 37 H 0.04 2.19 8.13 -2.39 -0.02 2.17 16 38 H 0.27 13.80 8.31 -92.71 -0.77 13.03 16 39 H 0.06 2.90 6.56 -2.39 -0.02 2.88 16 40 H 0.06 2.63 6.66 -2.39 -0.02 2.61 16 Total: -1.00 -70.83 338.21 4.62 -66.21 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: 1.06 Total: 18.52 kcal Atomic # 6 Polarization: 22.36 SS G_CDS: 5.14 Total: 27.50 kcal Atomic # 7 Polarization: -97.59 SS G_CDS: -4.12 Total: -101.71 kcal Atomic # 8 Polarization: -51.30 SS G_CDS: -0.12 Total: -51.41 kcal Atomic # 9 Polarization: -3.36 SS G_CDS: 0.63 Total: -2.73 kcal Atomic # 14 Polarization: 41.61 SS G_CDS: 2.03 Total: 43.64 kcal Total: -70.83 4.62 -66.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270957112.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.912 kcal (2) G-P(sol) polarization free energy of solvation -70.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds