Wall clock time and date at job start Fri Apr 10 2020 14:32:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08993 * 109.70904 * 2 1 4 4 C 1.53297 * 109.67862 * 239.46337 * 2 1 3 5 5 O 1.42955 * 109.26240 * 187.99804 * 4 2 1 6 6 C 1.42968 * 114.16829 * 62.55603 * 5 4 2 7 7 C 1.53296 * 109.22031 * 297.42226 * 6 5 4 8 8 N 1.47149 * 108.38788 * 52.29698 * 7 6 5 9 9 C 1.34778 * 120.98226 * 129.47250 * 8 7 6 10 10 O 1.21361 * 120.00199 * 177.30145 * 9 8 7 11 11 C 1.49309 * 119.99932 * 357.30734 * 9 8 7 12 12 O 1.21411 * 120.00136 * 6.45308 * 11 9 8 13 13 N 1.34776 * 120.00088 * 186.45923 * 11 9 8 14 14 C 1.40298 * 120.00232 * 179.97438 * 13 11 9 15 15 C 1.40727 * 126.09566 * 0.02562 * 14 13 11 16 16 N 1.30873 * 108.37059 * 179.97438 * 15 14 13 17 17 N 1.40063 * 108.44180 * 359.97438 * 16 15 14 18 18 C 1.37292 * 126.05866 * 179.97438 * 17 16 15 19 19 H 1.07995 * 120.00151 * 180.02562 * 18 17 16 20 20 C 1.39003 * 119.99763 * 0.02726 * 18 17 16 21 21 N 1.31282 * 120.00312 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00063 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47156 * 89.99600 * 22 20 18 24 24 H 1.48501 * 109.47333 * 210.00021 * 22 20 18 25 25 H 1.48507 * 109.46790 * 330.00009 * 22 20 18 26 26 C 1.35785 * 126.10051 * 179.71584 * 14 13 11 27 27 H 1.09005 * 109.46739 * 188.03115 * 1 2 3 28 28 H 1.08998 * 109.46763 * 308.02908 * 1 2 3 29 29 H 1.08995 * 109.47187 * 68.03039 * 1 2 3 30 30 H 1.09004 * 109.51161 * 68.04959 * 4 2 1 31 31 H 1.08994 * 109.51345 * 307.94798 * 4 2 1 32 32 H 1.08999 * 109.50838 * 57.34168 * 6 5 4 33 33 H 1.09000 * 109.51600 * 177.49168 * 6 5 4 34 34 H 1.08998 * 109.67680 * 172.02382 * 7 6 5 35 35 H 1.09001 * 109.67831 * 292.53300 * 7 6 5 36 36 H 0.97005 * 119.99841 * 359.97438 * 13 11 9 37 37 H 1.07997 * 125.81486 * 0.03205 * 15 14 13 38 38 H 0.96999 * 119.99909 * 180.02562 * 21 20 18 39 39 H 1.07998 * 126.24801 * 359.97438 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8977 1.0261 0.0000 4 6 2.0463 -0.7334 -1.2432 5 8 3.4635 -0.8921 -1.1427 6 6 3.8859 -1.6906 -0.0346 7 6 3.4649 -1.0056 1.2706 8 7 2.0268 -0.7035 1.1933 9 6 1.1884 -1.0609 2.1862 10 8 0.0143 -0.7598 2.1269 11 6 1.7042 -1.8273 3.3592 12 8 2.8959 -2.0272 3.4774 13 7 0.8469 -2.2974 4.2869 14 6 1.3315 -3.0180 5.3888 15 6 2.6800 -3.3226 5.6522 16 7 2.7384 -4.0049 6.7674 17 7 1.4365 -4.1623 7.2594 18 6 1.0816 -4.8219 8.4100 19 1 0.0427 -4.8845 8.6979 20 6 2.0596 -5.4090 9.2043 21 7 3.3226 -5.3333 8.8540 22 14 1.5769 -6.3059 10.7702 23 1 1.3200 -7.7358 10.4626 24 1 2.6794 -6.2027 11.7597 25 1 0.3474 -5.6920 11.3332 26 6 0.5837 -3.5407 6.3944 27 1 -0.3633 -1.0177 0.1436 28 1 -0.3633 0.6331 0.8095 29 1 -0.3633 0.3844 -0.9530 30 1 1.8073 -0.1525 -2.1341 31 1 1.5740 -1.7134 -1.3101 32 1 3.4202 -2.6742 -0.0962 33 1 4.9703 -1.7985 -0.0559 34 1 3.6555 -1.6712 2.1125 35 1 4.0285 -0.0815 1.3985 36 1 -0.1052 -2.1374 4.1927 37 1 3.5230 -3.0406 5.0389 38 1 4.0050 -5.7434 9.4082 39 1 -0.4900 -3.4771 6.4913 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321280560.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:32:43 Heat of formation + Delta-G solvation = 12.027075 kcal Electronic energy + Delta-G solvation = -25450.062264 eV Core-core repulsion = 21589.779390 eV Total energy + Delta-G solvation = -3860.282874 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.132 amu Computer time = 2.30 seconds Orbital eigenvalues (eV) -41.12380 -39.85497 -38.78304 -38.01264 -35.35302 -34.27282 -33.25724 -32.88882 -30.38947 -29.03829 -28.02815 -26.58709 -25.49259 -24.16990 -23.11240 -21.75417 -21.02512 -19.64242 -19.51982 -17.82830 -17.37351 -16.73878 -16.44845 -16.02917 -15.62789 -15.43669 -15.37781 -15.14134 -14.89750 -14.49856 -14.13883 -13.74257 -13.42335 -13.13157 -13.03552 -12.88829 -12.70769 -12.13743 -11.91541 -11.77077 -11.50513 -11.35735 -11.33008 -11.10964 -10.87929 -10.58729 -10.42929 -10.37655 -10.24156 -9.29419 -8.95832 -8.70931 -8.56889 -8.19525 -6.86170 -6.65630 -4.33448 1.54247 2.36665 2.89297 3.00663 3.05755 3.23055 3.52150 3.63001 3.66601 3.80545 4.29291 4.41064 4.50615 4.73385 4.81506 4.90097 4.93186 4.93788 5.05715 5.21662 5.35633 5.43389 5.58576 5.68580 5.91689 5.96396 6.04108 6.15032 6.28231 6.38201 6.67863 6.82559 6.85976 6.99820 7.06839 7.11511 7.64139 7.77087 8.01953 8.11452 8.40570 8.62335 9.24749 9.53194 10.30018 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.035533 B = 0.002907 C = 0.002727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.800129 B = 9631.055657 C =10265.246438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.105 3.895 3 H 0.082 0.918 4 C 0.053 3.947 5 O -0.385 6.385 6 C 0.048 3.952 7 C 0.017 3.983 8 N -0.584 5.584 9 C 0.518 3.482 10 O -0.522 6.522 11 C 0.484 3.516 12 O -0.515 6.515 13 N -0.576 5.576 14 C -0.074 4.074 15 C -0.024 4.024 16 N -0.260 5.260 17 N -0.137 5.137 18 C -0.321 4.321 19 H 0.119 0.881 20 C 0.047 3.953 21 N -0.766 5.766 22 Si 0.936 3.064 23 H -0.270 1.270 24 H -0.275 1.275 25 H -0.263 1.263 26 C -0.076 4.076 27 H 0.068 0.932 28 H 0.082 0.918 29 H 0.050 0.950 30 H 0.104 0.896 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.107 0.893 34 H 0.172 0.828 35 H 0.073 0.927 36 H 0.410 0.590 37 H 0.178 0.822 38 H 0.276 0.724 39 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.146 6.953 -14.425 16.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.002 3.998 3 H 0.100 0.900 4 C -0.025 4.025 5 O -0.303 6.303 6 C -0.030 4.030 7 C -0.104 4.104 8 N -0.319 5.319 9 C 0.301 3.699 10 O -0.399 6.399 11 C 0.266 3.734 12 O -0.395 6.395 13 N -0.217 5.217 14 C -0.180 4.180 15 C -0.200 4.200 16 N -0.091 5.091 17 N 0.097 4.903 18 C -0.454 4.454 19 H 0.136 0.864 20 C -0.171 4.171 21 N -0.392 5.392 22 Si 0.760 3.240 23 H -0.195 1.195 24 H -0.200 1.200 25 H -0.187 1.187 26 C -0.228 4.228 27 H 0.087 0.913 28 H 0.101 0.899 29 H 0.069 0.931 30 H 0.122 0.878 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.125 0.875 34 H 0.187 0.813 35 H 0.092 0.908 36 H 0.245 0.755 37 H 0.195 0.805 38 H 0.087 0.913 39 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -1.826 6.392 -13.574 15.114 hybrid contribution -1.394 0.134 0.095 1.404 sum -3.220 6.526 -13.479 15.318 Atomic orbital electron populations 1.22145 0.91788 1.04283 1.01512 1.22106 0.96692 0.96294 0.84717 0.89962 1.23059 0.81906 1.00226 0.97305 1.87938 1.21596 1.72187 1.48563 1.23075 1.01039 0.93598 0.85247 1.24014 0.78880 1.04364 1.03155 1.47995 1.09241 1.56409 1.18242 1.20137 0.85813 0.80330 0.83612 1.90770 1.16466 1.54695 1.77953 1.19777 0.86607 0.82614 0.84355 1.90185 1.15223 1.59268 1.74866 1.42159 1.10153 1.49173 1.20214 1.17261 0.93895 1.13223 0.93601 1.24147 0.95160 1.03037 0.97666 1.78272 0.97898 1.22045 1.10886 1.44578 1.03430 1.28696 1.13617 1.19941 0.95322 1.32780 0.97351 0.86387 1.25671 0.94723 0.96859 0.99869 1.70200 0.99950 1.33668 1.35417 0.85797 0.78995 0.79582 0.79633 1.19497 1.20000 1.18718 1.21308 0.95878 1.10018 0.95597 0.91342 0.89941 0.93136 0.87755 0.92576 0.92634 0.87452 0.81261 0.90839 0.75469 0.80500 0.91289 0.83330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 7.64 37.16 0.28 -1.19 16 2 C 0.10 1.13 3.69 -67.41 -0.25 0.88 16 3 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 4 C 0.05 0.51 6.28 37.31 0.23 0.74 16 5 O -0.38 -4.37 10.74 -35.23 -0.38 -4.75 16 6 C 0.05 0.51 6.99 37.31 0.26 0.77 16 7 C 0.02 0.20 6.41 -3.53 -0.02 0.18 16 8 N -0.58 -7.61 3.02 -165.30 -0.50 -8.11 16 9 C 0.52 7.79 7.58 -11.65 -0.09 7.70 16 10 O -0.52 -8.10 12.18 5.49 0.07 -8.04 16 11 C 0.48 8.37 7.78 -11.65 -0.09 8.28 16 12 O -0.52 -9.58 10.18 5.44 0.06 -9.52 16 13 N -0.58 -10.38 5.45 -10.45 -0.06 -10.44 16 14 C -0.07 -1.64 6.90 -83.92 -0.58 -2.22 16 15 C -0.02 -0.61 10.85 -17.02 -0.18 -0.79 16 16 N -0.26 -7.26 10.39 30.81 0.32 -6.94 16 17 N -0.14 -3.63 3.73 -11.40 -0.04 -3.67 16 18 C -0.32 -8.24 10.25 -14.82 -0.15 -8.39 16 19 H 0.12 2.69 7.83 -52.49 -0.41 2.28 16 20 C 0.05 1.16 5.50 -17.50 -0.10 1.07 16 21 N -0.77 -20.69 11.81 55.50 0.66 -20.04 16 22 Si 0.94 18.33 29.55 -169.99 -5.02 13.30 16 23 H -0.27 -5.21 7.11 56.52 0.40 -4.80 16 24 H -0.28 -5.35 7.11 56.52 0.40 -4.95 16 25 H -0.26 -4.94 7.11 56.52 0.40 -4.54 16 26 C -0.08 -1.74 11.50 -16.38 -0.19 -1.93 16 27 H 0.07 0.82 6.92 -51.93 -0.36 0.46 16 28 H 0.08 1.00 6.67 -51.93 -0.35 0.66 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.11 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.17 2.41 3.92 -56.52 -0.22 2.19 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.41 6.37 8.31 -40.82 -0.34 6.03 16 37 H 0.18 4.20 5.92 -52.49 -0.31 3.89 16 38 H 0.28 6.82 8.31 -40.82 -0.34 6.48 16 39 H 0.15 2.84 8.06 -52.49 -0.42 2.42 16 LS Contribution 322.62 15.07 4.86 4.86 Total: -1.00 -30.73 322.62 -5.42 -36.14 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: -4.50 Total: 12.10 kcal Atomic # 6 Polarization: 5.97 SS G_CDS: -0.87 Total: 5.10 kcal Atomic # 7 Polarization: -49.58 SS G_CDS: 0.38 Total: -49.21 kcal Atomic # 8 Polarization: -22.05 SS G_CDS: -0.26 Total: -22.30 kcal Atomic # 14 Polarization: 18.33 SS G_CDS: -5.02 Total: 13.30 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -30.73 -5.42 -36.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321280560.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.172 kcal (2) G-P(sol) polarization free energy of solvation -30.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.145 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.30 seconds