Wall clock time and date at job start Fri Apr 10 2020 14:32:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08993 * 109.70904 * 2 1 4 4 C 1.53297 * 109.67862 * 239.46337 * 2 1 3 5 5 O 1.42955 * 109.26240 * 187.99804 * 4 2 1 6 6 C 1.42968 * 114.16829 * 62.55603 * 5 4 2 7 7 C 1.53296 * 109.22031 * 297.42226 * 6 5 4 8 8 N 1.47149 * 108.38788 * 52.29698 * 7 6 5 9 9 C 1.34778 * 120.98226 * 129.47250 * 8 7 6 10 10 O 1.21361 * 120.00199 * 177.30145 * 9 8 7 11 11 C 1.49309 * 119.99932 * 357.30734 * 9 8 7 12 12 O 1.21411 * 120.00136 * 6.45308 * 11 9 8 13 13 N 1.34776 * 120.00088 * 186.45923 * 11 9 8 14 14 C 1.40298 * 120.00232 * 179.97438 * 13 11 9 15 15 C 1.40727 * 126.09566 * 0.02562 * 14 13 11 16 16 N 1.30873 * 108.37059 * 179.97438 * 15 14 13 17 17 N 1.40063 * 108.44180 * 359.97438 * 16 15 14 18 18 C 1.37292 * 126.05866 * 179.97438 * 17 16 15 19 19 H 1.07995 * 120.00151 * 180.02562 * 18 17 16 20 20 C 1.39003 * 119.99763 * 0.02726 * 18 17 16 21 21 N 1.31282 * 120.00312 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00063 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47156 * 89.99600 * 22 20 18 24 24 H 1.48501 * 109.47333 * 210.00021 * 22 20 18 25 25 H 1.48507 * 109.46790 * 330.00009 * 22 20 18 26 26 C 1.35785 * 126.10051 * 179.71584 * 14 13 11 27 27 H 1.09005 * 109.46739 * 188.03115 * 1 2 3 28 28 H 1.08998 * 109.46763 * 308.02908 * 1 2 3 29 29 H 1.08995 * 109.47187 * 68.03039 * 1 2 3 30 30 H 1.09004 * 109.51161 * 68.04959 * 4 2 1 31 31 H 1.08994 * 109.51345 * 307.94798 * 4 2 1 32 32 H 1.08999 * 109.50838 * 57.34168 * 6 5 4 33 33 H 1.09000 * 109.51600 * 177.49168 * 6 5 4 34 34 H 1.08998 * 109.67680 * 172.02382 * 7 6 5 35 35 H 1.09001 * 109.67831 * 292.53300 * 7 6 5 36 36 H 0.97005 * 119.99841 * 359.97438 * 13 11 9 37 37 H 1.07997 * 125.81486 * 0.03205 * 15 14 13 38 38 H 0.96999 * 119.99909 * 180.02562 * 21 20 18 39 39 H 1.07998 * 126.24801 * 359.97438 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8977 1.0261 0.0000 4 6 2.0463 -0.7334 -1.2432 5 8 3.4635 -0.8921 -1.1427 6 6 3.8859 -1.6906 -0.0346 7 6 3.4649 -1.0056 1.2706 8 7 2.0268 -0.7035 1.1933 9 6 1.1884 -1.0609 2.1862 10 8 0.0143 -0.7598 2.1269 11 6 1.7042 -1.8273 3.3592 12 8 2.8959 -2.0272 3.4774 13 7 0.8469 -2.2974 4.2869 14 6 1.3315 -3.0180 5.3888 15 6 2.6800 -3.3226 5.6522 16 7 2.7384 -4.0049 6.7674 17 7 1.4365 -4.1623 7.2594 18 6 1.0816 -4.8219 8.4100 19 1 0.0427 -4.8845 8.6979 20 6 2.0596 -5.4090 9.2043 21 7 3.3226 -5.3333 8.8540 22 14 1.5769 -6.3059 10.7702 23 1 1.3200 -7.7358 10.4626 24 1 2.6794 -6.2027 11.7597 25 1 0.3474 -5.6920 11.3332 26 6 0.5837 -3.5407 6.3944 27 1 -0.3633 -1.0177 0.1436 28 1 -0.3633 0.6331 0.8095 29 1 -0.3633 0.3844 -0.9530 30 1 1.8073 -0.1525 -2.1341 31 1 1.5740 -1.7134 -1.3101 32 1 3.4202 -2.6742 -0.0962 33 1 4.9703 -1.7985 -0.0559 34 1 3.6555 -1.6712 2.1125 35 1 4.0285 -0.0815 1.3985 36 1 -0.1052 -2.1374 4.1927 37 1 3.5230 -3.0406 5.0389 38 1 4.0050 -5.7434 9.4082 39 1 -0.4900 -3.4771 6.4913 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001321280560.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:32:41 Heat of formation + Delta-G solvation = -10.505915 kcal Electronic energy + Delta-G solvation = -25451.039367 eV Core-core repulsion = 21589.779390 eV Total energy + Delta-G solvation = -3861.259978 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.132 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.37792 -41.50482 -40.07388 -39.22070 -36.60053 -35.69559 -34.95256 -33.84254 -32.29698 -30.19300 -29.63181 -27.44332 -27.17885 -25.59817 -24.07223 -23.07946 -22.63843 -21.36578 -20.82247 -19.46668 -18.68342 -17.85916 -17.48808 -17.32601 -17.23422 -16.86812 -16.59530 -16.16010 -15.95565 -15.85118 -15.65735 -15.21090 -14.91570 -14.85587 -14.29265 -13.85914 -13.70852 -13.50371 -13.38249 -13.08969 -12.91184 -12.77786 -12.70013 -12.20747 -12.09120 -12.00829 -11.90698 -11.42816 -11.29208 -11.07446 -10.86813 -10.14533 -9.86019 -9.68661 -8.63927 -8.49213 -6.26960 0.22296 1.16308 1.29085 1.41601 1.58473 1.71256 2.00381 2.09344 2.35313 2.50825 2.79589 2.86284 3.07392 3.35118 3.65203 3.88342 4.01930 4.04736 4.18096 4.34990 4.38864 4.51531 4.56061 4.66614 4.80054 4.81416 4.87037 4.94031 4.97720 5.05740 5.10997 5.25972 5.40909 5.52880 5.90705 5.93635 6.07351 6.19081 6.36718 6.66978 6.73822 7.05121 7.40388 7.62598 8.49806 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.035533 B = 0.002907 C = 0.002727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.800129 B = 9631.055657 C =10265.246438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.101 3.899 3 H 0.094 0.906 4 C 0.053 3.947 5 O -0.393 6.393 6 C 0.052 3.948 7 C 0.017 3.983 8 N -0.580 5.580 9 C 0.522 3.478 10 O -0.527 6.527 11 C 0.486 3.514 12 O -0.528 6.528 13 N -0.577 5.577 14 C -0.059 4.059 15 C -0.044 4.044 16 N -0.308 5.308 17 N -0.163 5.163 18 C -0.354 4.354 19 H 0.141 0.859 20 C -0.004 4.004 21 N -0.820 5.820 22 Si 1.018 2.982 23 H -0.264 1.264 24 H -0.276 1.276 25 H -0.246 1.246 26 C -0.074 4.074 27 H 0.051 0.949 28 H 0.064 0.936 29 H 0.081 0.919 30 H 0.135 0.865 31 H 0.055 0.945 32 H 0.052 0.948 33 H 0.126 0.874 34 H 0.152 0.848 35 H 0.082 0.918 36 H 0.423 0.577 37 H 0.180 0.820 38 H 0.278 0.722 39 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.614 7.666 -15.723 18.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.001 4.001 3 H 0.112 0.888 4 C -0.024 4.024 5 O -0.311 6.311 6 C -0.025 4.025 7 C -0.104 4.104 8 N -0.314 5.314 9 C 0.305 3.695 10 O -0.404 6.404 11 C 0.269 3.731 12 O -0.408 6.408 13 N -0.221 5.221 14 C -0.165 4.165 15 C -0.220 4.220 16 N -0.139 5.139 17 N 0.069 4.931 18 C -0.485 4.485 19 H 0.158 0.842 20 C -0.216 4.216 21 N -0.447 5.447 22 Si 0.837 3.163 23 H -0.189 1.189 24 H -0.201 1.201 25 H -0.169 1.169 26 C -0.225 4.225 27 H 0.070 0.930 28 H 0.083 0.917 29 H 0.100 0.900 30 H 0.152 0.848 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.144 0.856 34 H 0.168 0.832 35 H 0.100 0.900 36 H 0.261 0.739 37 H 0.196 0.804 38 H 0.088 0.912 39 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -3.310 7.135 -14.924 16.870 hybrid contribution -0.937 0.053 0.262 0.975 sum -4.247 7.188 -14.662 16.873 Atomic orbital electron populations 1.22032 0.91444 1.03013 1.02552 1.22368 0.96980 0.96751 0.83976 0.88840 1.23219 0.80983 1.00584 0.97643 1.87937 1.22615 1.72158 1.48406 1.23079 1.02185 0.93053 0.84218 1.23931 0.78580 1.04457 1.03459 1.48123 1.09342 1.55634 1.18295 1.19649 0.85937 0.80568 0.83395 1.90789 1.16544 1.55098 1.77983 1.20403 0.86344 0.81769 0.84616 1.90230 1.16007 1.59247 1.75298 1.42096 1.11039 1.49435 1.19492 1.17289 0.92822 1.12157 0.94279 1.24295 0.96594 1.03566 0.97524 1.78164 0.99784 1.23632 1.12326 1.44837 1.03398 1.30151 1.14729 1.20640 0.96715 1.33418 0.97697 0.84175 1.26851 0.94316 0.97135 1.03299 1.70366 1.01443 1.35588 1.37311 0.84599 0.78987 0.78090 0.74603 1.18887 1.20128 1.16882 1.21999 0.97415 1.08432 0.94679 0.92951 0.91678 0.90028 0.84761 0.92653 0.92957 0.85611 0.83228 0.89999 0.73912 0.80360 0.91229 0.79637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.48 7.64 71.99 0.55 -1.93 16 2 C 0.10 1.92 3.69 44.97 0.17 2.08 16 3 H 0.09 1.62 8.14 -2.39 -0.02 1.61 16 4 C 0.05 0.85 6.28 72.08 0.45 1.30 16 5 O -0.39 -7.87 10.74 -148.98 -1.60 -9.47 16 6 C 0.05 1.01 6.99 72.08 0.50 1.52 16 7 C 0.02 0.39 6.41 86.35 0.55 0.94 16 8 N -0.58 -14.22 3.02 -795.23 -2.40 -16.62 16 9 C 0.52 15.16 7.58 87.23 0.66 15.83 16 10 O -0.53 -15.66 12.18 -3.28 -0.04 -15.70 16 11 C 0.49 16.61 7.78 87.23 0.68 17.29 16 12 O -0.53 -19.80 10.18 -3.44 -0.03 -19.84 16 13 N -0.58 -20.46 5.45 -305.32 -1.66 -22.12 16 14 C -0.06 -2.64 6.90 37.82 0.26 -2.38 16 15 C -0.04 -2.27 10.85 85.44 0.93 -1.34 16 16 N -0.31 -17.81 10.39 -56.43 -0.59 -18.40 16 17 N -0.16 -8.82 3.73 -189.99 -0.71 -9.53 16 18 C -0.35 -18.27 10.25 84.02 0.86 -17.41 16 19 H 0.14 6.29 7.83 -2.91 -0.02 6.26 16 20 C 0.00 -0.19 5.50 84.96 0.47 0.28 16 21 N -0.82 -45.90 11.81 21.66 0.26 -45.64 16 22 Si 1.02 37.59 29.55 68.60 2.03 39.61 16 23 H -0.26 -9.40 7.11 99.48 0.71 -8.70 16 24 H -0.28 -10.11 7.11 99.48 0.71 -9.40 16 25 H -0.25 -8.27 7.11 99.48 0.71 -7.56 16 26 C -0.07 -3.37 11.50 83.41 0.96 -2.41 16 27 H 0.05 1.16 6.92 -2.38 -0.02 1.14 16 28 H 0.06 1.46 6.67 -2.39 -0.02 1.45 16 29 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.13 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.13 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.15 4.23 3.92 -75.08 -0.29 3.94 16 35 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.42 12.62 8.31 -92.70 -0.77 11.85 16 37 H 0.18 8.83 5.92 -2.91 -0.02 8.81 16 38 H 0.28 14.28 8.31 -92.71 -0.77 13.51 16 39 H 0.19 6.73 8.06 -2.91 -0.02 6.71 16 Total: -1.00 -68.63 322.62 2.34 -66.29 By element: Atomic # 1 Polarization: 37.59 SS G_CDS: 0.05 Total: 37.64 kcal Atomic # 6 Polarization: 6.74 SS G_CDS: 7.04 Total: 13.78 kcal Atomic # 7 Polarization: -107.22 SS G_CDS: -5.10 Total: -112.32 kcal Atomic # 8 Polarization: -43.32 SS G_CDS: -1.68 Total: -45.00 kcal Atomic # 14 Polarization: 37.59 SS G_CDS: 2.03 Total: 39.61 kcal Total: -68.63 2.34 -66.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321280560.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.785 kcal (2) G-P(sol) polarization free energy of solvation -68.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds