Wall clock time and date at job start Fri Apr 10 2020 14:30:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 110.55173 * 2 1 4 4 C 1.54991 * 110.62093 * 123.05732 * 2 1 3 5 5 C 1.54805 * 102.09315 * 155.52113 * 4 2 1 6 6 H 1.08998 * 110.60413 * 220.38218 * 5 4 2 7 7 N 1.46505 * 110.48558 * 97.79522 * 5 4 2 8 8 C 1.34773 * 120.00096 * 158.77573 * 7 5 4 9 9 O 1.21373 * 120.00034 * 0.02562 * 8 7 5 10 10 C 1.49310 * 120.00416 * 179.72246 * 8 7 5 11 11 O 1.21403 * 119.99510 * 0.28172 * 10 8 7 12 12 N 1.34769 * 120.00238 * 180.27495 * 10 8 7 13 13 C 1.40292 * 120.00038 * 180.02562 * 12 10 8 14 14 C 1.40729 * 126.10076 * 0.03189 * 13 12 10 15 15 N 1.30876 * 108.37565 * 179.97438 * 14 13 12 16 16 N 1.40059 * 108.43653 * 359.97438 * 15 14 13 17 17 C 1.37301 * 126.05193 * 180.02562 * 16 15 14 18 18 H 1.08001 * 119.99808 * 179.97438 * 17 16 15 19 19 C 1.39005 * 120.00042 * 359.97322 * 17 16 15 20 20 N 1.31279 * 119.99989 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99945 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.47016 * 60.00280 * 21 19 17 23 23 H 1.48495 * 109.46986 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.47050 * 300.00170 * 21 19 17 25 25 C 1.35790 * 126.10119 * 179.71625 * 13 12 10 26 26 C 1.54091 * 104.18890 * 339.12181 * 5 4 2 27 27 O 1.43748 * 107.29652 * 357.96756 * 26 5 4 28 28 H 1.08997 * 109.47235 * 181.42340 * 1 2 3 29 29 H 1.09005 * 109.47014 * 301.42191 * 1 2 3 30 30 H 1.09006 * 109.47522 * 61.42040 * 1 2 3 31 31 H 1.09001 * 110.90568 * 37.31981 * 4 2 1 32 32 H 1.08998 * 110.90357 * 273.72529 * 4 2 1 33 33 H 0.97001 * 119.99790 * 338.78310 * 7 5 4 34 34 H 0.97001 * 120.00353 * 0.02562 * 12 10 8 35 35 H 1.08002 * 125.80883 * 0.02562 * 14 13 12 36 36 H 0.97001 * 120.00013 * 179.97438 * 20 19 17 37 37 H 1.07993 * 126.25022 * 0.02562 * 25 13 12 38 38 H 1.09002 * 109.88334 * 117.39503 * 26 5 4 39 39 H 1.09000 * 109.88042 * 238.39469 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9126 1.0206 0.0000 4 6 2.0759 -0.7913 1.2158 5 6 3.4794 -1.2179 0.7214 6 1 3.6998 -2.2403 1.0283 7 7 4.5025 -0.2999 1.2285 8 6 5.7896 -0.6946 1.2932 9 8 6.1011 -1.8103 0.9309 10 6 6.8332 0.2430 1.8041 11 8 6.5216 1.3591 2.1661 12 7 8.1210 -0.1498 1.8636 13 6 9.1015 0.7310 2.3442 14 6 8.8852 2.0462 2.7957 15 7 10.0353 2.5502 3.1646 16 7 11.0276 1.5821 2.9651 17 6 12.3661 1.7299 3.2330 18 1 13.0483 0.9149 3.0411 19 6 12.8431 2.9283 3.7511 20 7 12.0137 3.9187 3.9847 21 14 14.6643 3.1295 4.1148 22 1 15.4423 2.9447 2.8636 23 1 14.9134 4.4893 4.6569 24 1 15.0846 2.1143 5.1136 25 6 10.4278 0.4646 2.4622 26 6 3.3839 -1.1241 -0.8137 27 8 2.0383 -0.7334 -1.1350 28 1 -0.3633 -1.0273 0.0255 29 1 -0.3633 0.5358 0.8770 30 1 -0.3634 0.4916 -0.9025 31 1 1.4549 -1.6628 1.4232 32 1 2.1509 -0.1509 2.0946 33 1 4.2535 0.5918 1.5177 34 1 8.3701 -1.0415 1.5741 35 1 7.9321 2.5529 2.8325 36 1 12.3465 4.7549 4.3466 37 1 10.9185 -0.4619 2.2033 38 1 4.0853 -0.3763 -1.1838 39 1 3.6070 -2.0937 -1.2589 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345831414.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:30:58 Heat of formation + Delta-G solvation = -51.185565 kcal Electronic energy + Delta-G solvation = -24469.478051 eV Core-core repulsion = 20606.454072 eV Total energy + Delta-G solvation = -3863.023980 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.132 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.11580 -41.40910 -40.43014 -39.25006 -36.45019 -35.64960 -34.93011 -33.06112 -32.30566 -31.25520 -29.86542 -27.27013 -27.02516 -25.64398 -23.04068 -22.64291 -22.15447 -21.75637 -21.26212 -19.71711 -19.18359 -18.16736 -17.45756 -17.27231 -16.97507 -16.88560 -16.56530 -16.26472 -15.96218 -15.70613 -15.46623 -15.08582 -14.85777 -14.74386 -14.00975 -13.61187 -13.51209 -13.39093 -13.23896 -13.00900 -12.96334 -12.88848 -12.65567 -12.54104 -12.20338 -12.13522 -11.97363 -11.77079 -11.06080 -10.87990 -10.74972 -10.61812 -10.41588 -10.14785 -8.63314 -8.49149 -6.27079 0.23823 1.23244 1.30116 1.41615 1.57077 1.72002 2.01290 2.11675 2.51538 2.52699 2.82870 2.93945 3.07352 3.36947 3.51053 3.68742 3.86508 4.10094 4.16948 4.39050 4.41831 4.51658 4.63628 4.66652 4.72526 4.86543 4.93613 4.95008 4.97523 5.09705 5.16013 5.20951 5.29695 5.31002 5.86652 5.88031 5.95627 6.23271 6.45405 6.66023 6.75091 7.04797 7.40565 7.62233 8.49798 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.045120 B = 0.002343 C = 0.002271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.421741 B =11949.214869 C =12327.798093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.059 3.941 3 H 0.072 0.928 4 C -0.147 4.147 5 C 0.109 3.891 6 H 0.111 0.889 7 N -0.682 5.682 8 C 0.528 3.472 9 O -0.535 6.535 10 C 0.485 3.515 11 O -0.542 6.542 12 N -0.581 5.581 13 C -0.057 4.057 14 C -0.048 4.048 15 N -0.308 5.308 16 N -0.163 5.163 17 C -0.353 4.353 18 H 0.142 0.858 19 C -0.005 4.005 20 N -0.821 5.821 21 Si 1.020 2.980 22 H -0.254 1.254 23 H -0.277 1.277 24 H -0.253 1.253 25 C -0.075 4.075 26 C 0.038 3.962 27 O -0.390 6.390 28 H 0.067 0.933 29 H 0.090 0.910 30 H 0.059 0.941 31 H 0.112 0.888 32 H 0.106 0.894 33 H 0.420 0.580 34 H 0.424 0.576 35 H 0.176 0.824 36 H 0.278 0.722 37 H 0.188 0.812 38 H 0.053 0.947 39 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.892 -10.079 -5.225 20.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.002 3.998 3 H 0.090 0.910 4 C -0.185 4.185 5 C 0.005 3.995 6 H 0.129 0.871 7 N -0.336 5.336 8 C 0.309 3.691 9 O -0.412 6.412 10 C 0.267 3.733 11 O -0.421 6.421 12 N -0.226 5.226 13 C -0.163 4.163 14 C -0.224 4.224 15 N -0.140 5.140 16 N 0.069 4.931 17 C -0.485 4.485 18 H 0.159 0.841 19 C -0.217 4.217 20 N -0.448 5.448 21 Si 0.838 3.162 22 H -0.178 1.178 23 H -0.202 1.202 24 H -0.177 1.177 25 C -0.226 4.226 26 C -0.040 4.040 27 O -0.309 6.309 28 H 0.086 0.914 29 H 0.109 0.891 30 H 0.078 0.922 31 H 0.130 0.870 32 H 0.124 0.876 33 H 0.258 0.742 34 H 0.261 0.739 35 H 0.193 0.807 36 H 0.088 0.912 37 H 0.205 0.795 38 H 0.072 0.928 39 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -16.459 -8.900 -4.885 19.338 hybrid contribution 0.478 -0.270 -0.086 0.555 sum -15.981 -9.170 -4.971 19.084 Atomic orbital electron populations 1.21788 0.91451 1.03456 1.03363 1.23415 0.96681 0.95375 0.84289 0.90979 1.23516 0.92939 1.02788 0.99247 1.22558 0.87977 0.95284 0.93712 0.87137 1.45805 1.05402 1.19104 1.63301 1.19679 0.84109 0.86518 0.78822 1.90750 1.81525 1.20816 1.48092 1.20241 0.83727 0.87840 0.81474 1.90653 1.81134 1.21534 1.48749 1.42077 1.04692 1.16585 1.59248 1.17283 0.88333 0.92992 1.17726 1.24265 0.97944 0.94434 1.05715 1.78160 0.95046 1.14197 1.26569 1.44842 1.06574 1.06918 1.34775 1.20618 0.79538 1.03163 1.45132 0.84092 1.26884 1.06198 0.94077 0.94582 1.70367 1.37721 1.03703 1.33042 0.84644 0.73561 0.78282 0.79698 1.17779 1.20225 1.17746 1.22013 0.92037 0.95249 1.13275 1.23611 0.84481 1.01434 0.94505 1.88910 1.27633 1.74048 1.40340 0.91405 0.89111 0.92190 0.86967 0.87592 0.74178 0.73860 0.80678 0.91222 0.79483 0.92849 0.88272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 9.66 71.98 0.70 -0.73 16 2 C 0.06 0.81 3.98 31.28 0.12 0.93 16 3 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 4 C -0.15 -1.61 6.22 31.89 0.20 -1.41 16 5 C 0.11 1.78 3.35 45.98 0.15 1.93 16 6 H 0.11 1.84 7.66 -2.39 -0.02 1.83 16 7 N -0.68 -13.90 5.01 -439.33 -2.20 -16.10 16 8 C 0.53 14.35 7.88 87.23 0.69 15.04 16 9 O -0.54 -15.71 16.18 -3.32 -0.05 -15.76 16 10 C 0.49 16.57 7.85 87.23 0.69 17.25 16 11 O -0.54 -21.16 13.62 -3.41 -0.05 -21.21 16 12 N -0.58 -20.82 5.45 -305.33 -1.66 -22.49 16 13 C -0.06 -2.58 6.90 37.83 0.26 -2.32 16 14 C -0.05 -2.53 10.85 85.44 0.93 -1.60 16 15 N -0.31 -18.12 10.39 -56.43 -0.59 -18.71 16 16 N -0.16 -8.91 3.73 -189.98 -0.71 -9.62 16 17 C -0.35 -18.39 10.25 84.02 0.86 -17.53 16 18 H 0.14 6.34 7.83 -2.91 -0.02 6.31 16 19 C -0.01 -0.27 5.50 84.96 0.47 0.20 16 20 N -0.82 -46.42 11.81 21.66 0.26 -46.16 16 21 Si 1.02 37.81 29.55 68.60 2.03 39.84 16 22 H -0.25 -8.82 7.11 99.48 0.71 -8.12 16 23 H -0.28 -10.19 7.11 99.48 0.71 -9.49 16 24 H -0.25 -8.80 7.11 99.48 0.71 -8.09 16 25 C -0.07 -3.43 11.50 83.41 0.96 -2.47 16 26 C 0.04 0.70 7.50 72.35 0.54 1.24 16 27 O -0.39 -7.57 11.22 -148.98 -1.67 -9.25 16 28 H 0.07 0.64 8.13 -2.39 -0.02 0.62 16 29 H 0.09 0.57 8.14 -2.38 -0.02 0.56 16 30 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 31 H 0.11 0.92 8.05 -2.39 -0.02 0.90 16 32 H 0.11 0.92 7.96 -2.39 -0.02 0.90 16 33 H 0.42 7.84 8.00 -92.71 -0.74 7.10 16 34 H 0.42 12.67 8.29 -92.71 -0.77 11.90 16 35 H 0.18 9.00 5.92 -2.91 -0.02 8.98 16 36 H 0.28 14.45 8.31 -92.71 -0.77 13.68 16 37 H 0.19 6.83 8.06 -2.91 -0.02 6.81 16 38 H 0.05 1.12 7.93 -2.39 -0.02 1.10 16 39 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -72.14 338.41 1.52 -70.63 By element: Atomic # 1 Polarization: 38.71 SS G_CDS: -0.40 Total: 38.31 kcal Atomic # 6 Polarization: 3.96 SS G_CDS: 6.56 Total: 10.52 kcal Atomic # 7 Polarization: -108.17 SS G_CDS: -4.90 Total: -113.08 kcal Atomic # 8 Polarization: -44.45 SS G_CDS: -1.77 Total: -46.22 kcal Atomic # 14 Polarization: 37.81 SS G_CDS: 2.03 Total: 39.84 kcal Total: -72.14 1.52 -70.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345831414.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.440 kcal (2) G-P(sol) polarization free energy of solvation -72.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds