Wall clock time and date at job start Fri Apr 10 2020 14:28:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35498 * 117.00082 * 2 1 4 4 N 1.32193 * 119.72828 * 359.72843 * 3 2 1 5 5 C 1.31863 * 121.88159 * 179.74754 * 4 3 2 6 6 C 1.38930 * 121.08822 * 0.52765 * 5 4 3 7 7 N 1.40214 * 120.34109 * 179.76312 * 6 5 4 8 8 C 1.34779 * 119.99894 * 145.00264 * 7 6 5 9 9 O 1.21585 * 120.00104 * 4.63259 * 8 7 6 10 10 N 1.34776 * 119.99682 * 184.63907 * 8 7 6 11 11 C 1.46502 * 120.00169 * 359.97438 * 10 8 7 12 12 C 1.46505 * 119.99904 * 179.97438 * 10 8 7 13 13 C 1.50702 * 109.46450 * 90.00180 * 12 10 8 14 14 H 1.07993 * 120.00359 * 359.97438 * 13 12 10 15 15 C 1.37883 * 119.99508 * 180.02562 * 13 12 10 16 16 N 1.31517 * 119.99739 * 179.97438 * 15 13 12 17 17 Si 1.86803 * 120.00030 * 359.97438 * 15 13 12 18 18 H 1.48490 * 109.46908 * 90.00054 * 17 15 13 19 19 H 1.48501 * 109.46936 * 210.00321 * 17 15 13 20 20 H 1.48500 * 109.46745 * 329.99888 * 17 15 13 21 21 C 1.38898 * 119.31796 * 359.74235 * 6 5 4 22 22 C 1.39961 * 118.28933 * 0.02562 * 21 6 5 23 23 C 1.47535 * 120.56163 * 179.97438 * 22 21 6 24 24 N 1.34775 * 120.00214 * 0.02562 * 23 22 21 25 25 O 1.21588 * 119.99324 * 180.02562 * 23 22 21 26 26 H 1.08996 * 109.47617 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47026 * 300.00342 * 1 2 3 28 28 H 1.09009 * 109.46807 * 59.99497 * 1 2 3 29 29 H 1.07996 * 119.45660 * 180.27268 * 5 4 3 30 30 H 0.96996 * 119.99797 * 324.99512 * 7 6 5 31 31 H 1.09006 * 109.46833 * 90.00213 * 11 10 8 32 32 H 1.08991 * 109.47050 * 209.99681 * 11 10 8 33 33 H 1.08994 * 109.47229 * 330.00321 * 11 10 8 34 34 H 1.08997 * 109.47062 * 209.99838 * 12 10 8 35 35 H 1.08997 * 109.46706 * 330.00594 * 12 10 8 36 36 H 0.97000 * 119.99718 * 179.97438 * 16 15 13 37 37 H 1.07996 * 120.85361 * 180.02562 * 21 6 5 38 38 H 0.97004 * 119.99774 * 0.02562 * 24 23 22 39 39 H 0.96999 * 119.99701 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2073 0.0000 4 7 1.3190 2.3125 -0.0054 5 6 1.8731 3.5091 -0.0007 6 6 3.2541 3.6602 -0.0007 7 7 3.8266 4.9401 -0.0007 8 6 4.9746 5.1648 0.6688 9 8 5.5582 4.2410 1.2020 10 7 5.4756 6.4135 0.7472 11 6 4.7726 7.5266 0.1043 12 6 6.7231 6.6579 1.4754 13 6 7.8904 6.5200 0.5322 14 1 7.7200 6.2744 -0.5056 15 6 9.1760 6.7063 0.9945 16 7 10.1947 6.5854 0.1716 17 14 9.4706 7.1304 2.7898 18 1 9.6356 5.8797 3.5731 19 1 10.7002 7.9546 2.9082 20 1 8.3103 7.8940 3.3148 21 6 4.0619 2.5302 -0.0003 22 6 3.4451 1.2739 -0.0005 23 6 4.2548 0.0406 -0.0006 24 7 5.6003 0.1178 -0.0001 25 8 3.7081 -1.0455 -0.0012 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5140 -0.8900 29 1 1.2429 4.3862 -0.0010 30 1 3.3966 5.6637 -0.4826 31 1 4.0633 7.9630 0.8076 32 1 5.4942 8.2841 -0.2011 33 1 4.2371 7.1606 -0.7717 34 1 6.7095 7.6652 1.8917 35 1 6.8206 5.9322 2.2827 36 1 11.0990 6.7168 0.4967 37 1 5.1382 2.6188 0.0001 38 1 6.0364 0.9844 0.0008 39 1 6.1326 -0.6930 0.0002 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000268612906.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:28:32 Heat of formation + Delta-G solvation = -43.404351 kcal Electronic energy + Delta-G solvation = -25281.886716 eV Core-core repulsion = 21419.200155 eV Total energy + Delta-G solvation = -3862.686561 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.132 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.18228 -39.87498 -38.77881 -37.90030 -35.34536 -34.62355 -33.83004 -32.61430 -32.02150 -29.86239 -28.35755 -27.22290 -26.06579 -24.87056 -23.50603 -22.29828 -20.87992 -19.77089 -18.72396 -18.20455 -17.75788 -17.08826 -16.94316 -16.33619 -16.13978 -16.07835 -15.18342 -14.93070 -14.63868 -14.49990 -14.23461 -13.96361 -13.68829 -13.33035 -13.21109 -13.06869 -12.83102 -12.50054 -12.20486 -11.89904 -11.62087 -11.42648 -11.06387 -10.66032 -10.55771 -10.38837 -10.22854 -9.81711 -9.80317 -9.62744 -9.58461 -9.33985 -8.67754 -8.14028 -7.76330 -6.17669 -4.17441 0.56300 1.16631 2.77114 2.87848 3.07633 3.23240 3.29147 3.31672 3.49174 3.52389 3.82490 4.13090 4.19980 4.31510 4.64729 4.80299 4.93235 5.15006 5.21594 5.22650 5.26196 5.31321 5.39114 5.54931 5.64323 5.84107 5.96839 6.01992 6.38504 6.64131 6.74520 6.84201 7.05196 7.15439 7.27887 7.36936 7.50398 7.63280 8.24009 8.32840 8.36671 8.83669 8.92039 9.41971 10.95425 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.019493 B = 0.003635 C = 0.003212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.083290 B = 7700.014848 C = 8715.940131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.274 6.274 3 C 0.349 3.651 4 N -0.526 5.526 5 C 0.138 3.862 6 C 0.084 3.916 7 N -0.687 5.687 8 C 0.701 3.299 9 O -0.573 6.573 10 N -0.604 5.604 11 C 0.082 3.918 12 C 0.230 3.770 13 C -0.533 4.533 14 H 0.075 0.925 15 C 0.074 3.926 16 N -0.896 5.896 17 Si 0.876 3.124 18 H -0.273 1.273 19 H -0.285 1.285 20 H -0.266 1.266 21 C -0.010 4.010 22 C -0.196 4.196 23 C 0.573 3.427 24 N -0.849 5.849 25 O -0.528 6.528 26 H 0.095 0.905 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.166 0.834 30 H 0.406 0.594 31 H 0.048 0.952 32 H 0.082 0.918 33 H 0.054 0.946 34 H 0.033 0.967 35 H 0.039 0.961 36 H 0.265 0.735 37 H 0.167 0.833 38 H 0.406 0.594 39 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.342 -4.012 -1.654 17.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.178 6.178 3 C 0.168 3.832 4 N -0.250 5.250 5 C -0.022 4.022 6 C -0.015 4.015 7 N -0.339 5.339 8 C 0.403 3.597 9 O -0.449 6.449 10 N -0.338 5.338 11 C -0.062 4.062 12 C 0.109 3.891 13 C -0.571 4.571 14 H 0.093 0.907 15 C -0.129 4.129 16 N -0.534 5.534 17 Si 0.703 3.297 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.191 1.191 21 C -0.039 4.039 22 C -0.202 4.202 23 C 0.358 3.642 24 N -0.414 5.414 25 O -0.405 6.405 26 H 0.114 0.886 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.183 0.817 30 H 0.244 0.756 31 H 0.067 0.933 32 H 0.101 0.899 33 H 0.073 0.927 34 H 0.051 0.949 35 H 0.057 0.943 36 H 0.075 0.925 37 H 0.184 0.816 38 H 0.236 0.764 39 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -17.961 -5.549 -1.236 18.840 hybrid contribution 1.245 1.173 0.579 1.806 sum -16.716 -4.376 -0.657 17.292 Atomic orbital electron populations 1.22915 0.77911 1.03007 1.02186 1.86524 1.21984 1.22939 1.86348 1.19730 0.88047 0.85005 0.90442 1.67397 1.39353 0.98017 1.20211 1.22384 0.90834 0.94368 0.94628 1.18237 0.92399 0.85547 1.05268 1.42743 1.26617 1.09528 1.55023 1.15853 0.80013 0.84295 0.79529 1.90860 1.60404 1.41911 1.51769 1.47134 1.26366 1.04494 1.55842 1.21656 0.97408 0.90957 0.96194 1.19657 0.80188 0.96566 0.92673 1.21320 0.89466 1.48846 0.97501 0.90722 1.24847 0.95861 0.94628 0.97574 1.69891 0.98924 1.49384 1.35169 0.86858 0.78116 0.79105 0.85635 1.19841 1.21046 1.19058 1.21988 1.02278 0.88966 0.90638 1.19893 0.91355 0.94507 1.14493 1.17710 0.82376 0.88163 0.75946 1.43769 1.06776 1.13047 1.77825 1.90844 1.71731 1.28556 1.49327 0.88631 0.92382 0.92375 0.81734 0.75620 0.93304 0.89897 0.92720 0.94889 0.94272 0.92464 0.81579 0.76367 0.76423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.36 10.38 101.05 1.05 1.41 16 2 O -0.27 -4.04 8.57 -40.01 -0.34 -4.38 16 3 C 0.35 5.15 7.51 -16.64 -0.12 5.03 16 4 N -0.53 -6.82 9.19 -12.84 -0.12 -6.94 16 5 C 0.14 1.55 11.10 -17.28 -0.19 1.36 16 6 C 0.08 1.12 6.32 -83.52 -0.53 0.59 16 7 N -0.69 -9.12 5.24 -14.13 -0.07 -9.19 16 8 C 0.70 12.80 8.14 -86.92 -0.71 12.09 16 9 O -0.57 -12.47 13.39 5.29 0.07 -12.40 16 10 N -0.60 -11.10 2.86 -188.74 -0.54 -11.64 16 11 C 0.08 1.05 10.24 59.85 0.61 1.67 16 12 C 0.23 5.18 4.23 -5.19 -0.02 5.16 16 13 C -0.53 -14.31 9.94 -34.44 -0.34 -14.65 16 14 H 0.07 2.21 8.06 -52.49 -0.42 1.78 16 15 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 16 N -0.90 -26.42 13.96 55.43 0.77 -25.64 16 17 Si 0.88 20.50 27.47 -169.99 -4.67 15.84 16 18 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 20 H -0.27 -5.82 6.54 56.52 0.37 -5.45 16 21 C -0.01 -0.15 8.27 -38.69 -0.32 -0.47 16 22 C -0.20 -2.95 5.90 -104.71 -0.62 -3.56 16 23 C 0.57 8.88 8.04 -12.47 -0.10 8.78 16 24 N -0.85 -10.48 8.83 30.46 0.27 -10.22 16 25 O -0.53 -9.65 16.02 -16.53 -0.26 -9.92 16 26 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 27 H 0.06 0.56 8.11 -51.93 -0.42 0.14 16 28 H 0.06 0.54 8.10 -51.92 -0.42 0.12 16 29 H 0.17 1.25 8.06 -52.49 -0.42 0.82 16 30 H 0.41 3.94 6.52 -40.82 -0.27 3.67 16 31 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.08 1.13 8.07 -51.93 -0.42 0.71 16 33 H 0.05 0.54 6.30 -51.93 -0.33 0.21 16 34 H 0.03 0.71 7.13 -51.93 -0.37 0.34 16 35 H 0.04 0.95 6.85 -51.93 -0.36 0.59 16 36 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 37 H 0.17 2.63 4.76 -52.49 -0.25 2.38 16 38 H 0.41 4.79 6.93 -40.82 -0.28 4.51 16 39 H 0.40 4.21 8.93 -40.82 -0.36 3.84 16 LS Contribution 334.21 15.07 5.04 5.04 Total: -1.00 -35.68 334.21 -5.58 -41.26 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: -4.33 Total: 8.85 kcal Atomic # 6 Polarization: 20.73 SS G_CDS: -1.39 Total: 19.34 kcal Atomic # 7 Polarization: -63.94 SS G_CDS: 0.31 Total: -63.63 kcal Atomic # 8 Polarization: -26.16 SS G_CDS: -0.54 Total: -26.69 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -4.67 Total: 15.84 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -35.68 -5.58 -41.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268612906.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.144 kcal (2) G-P(sol) polarization free energy of solvation -35.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds