Wall clock time and date at job start Fri Apr 10 2020 14:28:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35498 * 117.00082 * 2 1 4 4 N 1.32193 * 119.72828 * 359.72843 * 3 2 1 5 5 C 1.31863 * 121.88159 * 179.74754 * 4 3 2 6 6 C 1.38930 * 121.08822 * 0.52765 * 5 4 3 7 7 N 1.40214 * 120.34109 * 179.76312 * 6 5 4 8 8 C 1.34779 * 119.99894 * 145.00264 * 7 6 5 9 9 O 1.21585 * 120.00104 * 4.63259 * 8 7 6 10 10 N 1.34776 * 119.99682 * 184.63907 * 8 7 6 11 11 C 1.46502 * 120.00169 * 359.97438 * 10 8 7 12 12 C 1.46505 * 119.99904 * 179.97438 * 10 8 7 13 13 C 1.50702 * 109.46450 * 90.00180 * 12 10 8 14 14 H 1.07993 * 120.00359 * 359.97438 * 13 12 10 15 15 C 1.37883 * 119.99508 * 180.02562 * 13 12 10 16 16 N 1.31517 * 119.99739 * 179.97438 * 15 13 12 17 17 Si 1.86803 * 120.00030 * 359.97438 * 15 13 12 18 18 H 1.48490 * 109.46908 * 90.00054 * 17 15 13 19 19 H 1.48501 * 109.46936 * 210.00321 * 17 15 13 20 20 H 1.48500 * 109.46745 * 329.99888 * 17 15 13 21 21 C 1.38898 * 119.31796 * 359.74235 * 6 5 4 22 22 C 1.39961 * 118.28933 * 0.02562 * 21 6 5 23 23 C 1.47535 * 120.56163 * 179.97438 * 22 21 6 24 24 N 1.34775 * 120.00214 * 0.02562 * 23 22 21 25 25 O 1.21588 * 119.99324 * 180.02562 * 23 22 21 26 26 H 1.08996 * 109.47617 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47026 * 300.00342 * 1 2 3 28 28 H 1.09009 * 109.46807 * 59.99497 * 1 2 3 29 29 H 1.07996 * 119.45660 * 180.27268 * 5 4 3 30 30 H 0.96996 * 119.99797 * 324.99512 * 7 6 5 31 31 H 1.09006 * 109.46833 * 90.00213 * 11 10 8 32 32 H 1.08991 * 109.47050 * 209.99681 * 11 10 8 33 33 H 1.08994 * 109.47229 * 330.00321 * 11 10 8 34 34 H 1.08997 * 109.47062 * 209.99838 * 12 10 8 35 35 H 1.08997 * 109.46706 * 330.00594 * 12 10 8 36 36 H 0.97000 * 119.99718 * 179.97438 * 16 15 13 37 37 H 1.07996 * 120.85361 * 180.02562 * 21 6 5 38 38 H 0.97004 * 119.99774 * 0.02562 * 24 23 22 39 39 H 0.96999 * 119.99701 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2073 0.0000 4 7 1.3190 2.3125 -0.0054 5 6 1.8731 3.5091 -0.0007 6 6 3.2541 3.6602 -0.0007 7 7 3.8266 4.9401 -0.0007 8 6 4.9746 5.1648 0.6688 9 8 5.5582 4.2410 1.2020 10 7 5.4756 6.4135 0.7472 11 6 4.7726 7.5266 0.1043 12 6 6.7231 6.6579 1.4754 13 6 7.8904 6.5200 0.5322 14 1 7.7200 6.2744 -0.5056 15 6 9.1760 6.7063 0.9945 16 7 10.1947 6.5854 0.1716 17 14 9.4706 7.1304 2.7898 18 1 9.6356 5.8797 3.5731 19 1 10.7002 7.9546 2.9082 20 1 8.3103 7.8940 3.3148 21 6 4.0619 2.5302 -0.0003 22 6 3.4451 1.2739 -0.0005 23 6 4.2548 0.0406 -0.0006 24 7 5.6003 0.1178 -0.0001 25 8 3.7081 -1.0455 -0.0012 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5140 -0.8900 29 1 1.2429 4.3862 -0.0010 30 1 3.3966 5.6637 -0.4826 31 1 4.0633 7.9630 0.8076 32 1 5.4942 8.2841 -0.2011 33 1 4.2371 7.1606 -0.7717 34 1 6.7095 7.6652 1.8917 35 1 6.8206 5.9322 2.2827 36 1 11.0990 6.7168 0.4967 37 1 5.1382 2.6188 0.0001 38 1 6.0364 0.9844 0.0008 39 1 6.1326 -0.6930 0.0002 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000268612906.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:28:31 Heat of formation + Delta-G solvation = -73.353654 kcal Electronic energy + Delta-G solvation = -25283.185415 eV Core-core repulsion = 21419.200155 eV Total energy + Delta-G solvation = -3863.985260 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.132 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.29003 -41.15790 -39.95309 -38.99947 -36.78232 -35.91169 -35.00165 -34.58760 -33.11130 -31.17691 -29.86241 -28.13671 -27.33648 -25.95112 -24.94942 -23.73157 -22.07103 -21.07933 -19.83250 -19.35790 -19.10411 -18.90521 -18.15352 -17.51740 -17.22499 -17.12550 -16.61325 -16.48412 -15.84682 -15.67628 -15.57521 -15.15878 -15.07412 -14.59040 -14.36282 -14.31380 -14.08932 -13.90588 -13.63772 -13.21713 -12.78402 -12.71442 -12.45575 -12.38139 -12.00576 -11.74009 -11.68116 -11.52148 -11.17282 -10.94423 -10.78601 -10.74057 -10.54012 -9.50806 -8.96009 -8.29586 -6.34193 -0.48609 0.05921 1.37406 1.41462 1.48573 1.57606 1.73312 2.07371 2.16029 2.34821 2.43546 2.71404 2.95907 3.06276 3.22856 3.61889 3.75407 3.85537 4.25258 4.33801 4.38795 4.46813 4.46888 4.66394 4.74046 4.78483 4.88192 4.91709 4.97886 5.01237 5.48906 5.52417 5.56225 5.81307 5.95258 6.15372 6.26558 6.29827 6.59699 6.68004 6.98529 7.20431 7.27508 7.56204 8.86960 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.019493 B = 0.003635 C = 0.003212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.083290 B = 7700.014848 C = 8715.940131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.297 6.297 3 C 0.342 3.658 4 N -0.523 5.523 5 C 0.165 3.835 6 C 0.070 3.930 7 N -0.663 5.663 8 C 0.695 3.305 9 O -0.617 6.617 10 N -0.613 5.613 11 C 0.074 3.926 12 C 0.239 3.761 13 C -0.533 4.533 14 H 0.032 0.968 15 C 0.013 3.987 16 N -0.946 5.946 17 Si 0.944 3.056 18 H -0.277 1.277 19 H -0.281 1.281 20 H -0.235 1.235 21 C -0.017 4.017 22 C -0.215 4.215 23 C 0.569 3.431 24 N -0.835 5.835 25 O -0.563 6.563 26 H 0.115 0.885 27 H 0.064 0.936 28 H 0.067 0.933 29 H 0.214 0.786 30 H 0.426 0.574 31 H 0.083 0.917 32 H 0.071 0.929 33 H 0.086 0.914 34 H 0.055 0.945 35 H 0.023 0.977 36 H 0.267 0.733 37 H 0.150 0.850 38 H 0.409 0.591 39 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.000 -2.276 -0.770 20.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.202 6.202 3 C 0.162 3.838 4 N -0.247 5.247 5 C 0.005 3.995 6 C -0.028 4.028 7 N -0.316 5.316 8 C 0.397 3.603 9 O -0.497 6.497 10 N -0.347 5.347 11 C -0.068 4.068 12 C 0.116 3.884 13 C -0.571 4.571 14 H 0.050 0.950 15 C -0.185 4.185 16 N -0.586 5.586 17 Si 0.767 3.233 18 H -0.203 1.203 19 H -0.206 1.206 20 H -0.158 1.158 21 C -0.046 4.046 22 C -0.222 4.222 23 C 0.355 3.645 24 N -0.400 5.400 25 O -0.443 6.443 26 H 0.133 0.867 27 H 0.082 0.918 28 H 0.085 0.915 29 H 0.230 0.770 30 H 0.268 0.732 31 H 0.102 0.898 32 H 0.090 0.910 33 H 0.105 0.895 34 H 0.072 0.928 35 H 0.041 0.959 36 H 0.076 0.924 37 H 0.167 0.833 38 H 0.240 0.760 39 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -20.679 -3.782 -0.393 21.026 hybrid contribution 1.986 0.607 0.192 2.086 sum -18.693 -3.175 -0.201 18.962 Atomic orbital electron populations 1.23187 0.75757 1.04661 1.02881 1.86498 1.24281 1.23294 1.86105 1.19895 0.88086 0.85649 0.90159 1.67547 1.38834 0.98020 1.20283 1.23063 0.90234 0.95157 0.91039 1.18372 0.93218 0.84886 1.06299 1.42327 1.25084 1.10153 1.54047 1.16059 0.80942 0.83726 0.79606 1.90837 1.61962 1.43251 1.53609 1.47079 1.25502 1.06066 1.56072 1.21987 0.97518 0.89255 0.98055 1.19303 0.80559 0.96980 0.91541 1.21580 0.91415 1.47726 0.96423 0.94999 1.25792 0.95577 0.94669 1.02507 1.70048 0.99521 1.51376 1.37663 0.85771 0.79087 0.78926 0.79480 1.20321 1.20636 1.15826 1.21869 1.01753 0.89734 0.91229 1.19856 0.91861 0.94224 1.16249 1.17921 0.83059 0.88046 0.75524 1.43671 1.06107 1.13708 1.76511 1.90811 1.72447 1.29644 1.51377 0.86674 0.91762 0.91451 0.76968 0.73206 0.89841 0.91013 0.89518 0.92754 0.95882 0.92415 0.83300 0.75963 0.75384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 10.38 113.37 1.18 1.73 16 2 O -0.30 -8.61 8.57 -67.13 -0.57 -9.18 16 3 C 0.34 9.82 7.51 85.13 0.64 10.46 16 4 N -0.52 -12.20 9.19 -307.55 -2.83 -15.03 16 5 C 0.17 3.13 11.10 84.85 0.94 4.07 16 6 C 0.07 1.73 6.32 38.12 0.24 1.97 16 7 N -0.66 -15.84 5.24 -316.89 -1.66 -17.50 16 8 C 0.70 24.54 8.14 179.05 1.46 26.00 16 9 O -0.62 -27.09 13.39 -3.98 -0.05 -27.15 16 10 N -0.61 -21.51 2.86 -869.31 -2.48 -24.00 16 11 C 0.07 1.66 10.24 127.77 1.31 2.96 16 12 C 0.24 10.52 4.23 85.63 0.36 10.88 16 13 C -0.53 -29.12 9.94 25.60 0.25 -28.86 16 14 H 0.03 1.96 8.06 -2.91 -0.02 1.93 16 15 C 0.01 0.70 5.47 84.66 0.46 1.17 16 16 N -0.95 -57.42 13.96 21.45 0.30 -57.12 16 17 Si 0.94 42.07 27.47 68.60 1.88 43.95 16 18 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 19 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 20 H -0.24 -9.24 6.54 99.48 0.65 -8.59 16 21 C -0.02 -0.51 8.27 22.85 0.19 -0.33 16 22 C -0.22 -6.52 5.90 -19.92 -0.12 -6.64 16 23 C 0.57 18.18 8.04 86.70 0.70 18.88 16 24 N -0.84 -21.49 8.83 -175.82 -1.55 -23.04 16 25 O -0.56 -21.19 16.02 16.87 0.27 -20.92 16 26 H 0.12 1.66 8.14 -2.39 -0.02 1.64 16 27 H 0.06 1.12 8.11 -2.39 -0.02 1.10 16 28 H 0.07 1.13 8.10 -2.38 -0.02 1.11 16 29 H 0.21 1.93 8.06 -2.91 -0.02 1.91 16 30 H 0.43 6.49 6.52 -92.71 -0.60 5.89 16 31 H 0.08 1.34 8.14 -2.38 -0.02 1.32 16 32 H 0.07 1.80 8.07 -2.39 -0.02 1.78 16 33 H 0.09 1.35 6.30 -2.39 -0.02 1.34 16 34 H 0.05 2.18 7.13 -2.39 -0.02 2.16 16 35 H 0.02 1.10 6.85 -2.39 -0.02 1.08 16 36 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 37 H 0.15 4.91 4.76 -2.91 -0.01 4.90 16 38 H 0.41 10.23 6.93 -92.71 -0.64 9.59 16 39 H 0.41 8.94 8.93 -92.71 -0.83 8.11 16 Total: -1.00 -81.32 334.21 -0.07 -81.39 By element: Atomic # 1 Polarization: 27.29 SS G_CDS: -0.99 Total: 26.31 kcal Atomic # 6 Polarization: 34.68 SS G_CDS: 7.61 Total: 42.29 kcal Atomic # 7 Polarization: -128.46 SS G_CDS: -8.22 Total: -136.69 kcal Atomic # 8 Polarization: -56.90 SS G_CDS: -0.36 Total: -57.26 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 1.88 Total: 43.95 kcal Total: -81.32 -0.07 -81.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268612906.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.040 kcal (2) G-P(sol) polarization free energy of solvation -81.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds