Wall clock time and date at job start Fri Apr 10 2020 14:29:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34778 * 119.99640 * 2 1 4 4 O 1.21594 * 119.99528 * 177.29622 * 3 2 1 5 5 C 1.47567 * 120.00346 * 357.29519 * 3 2 1 6 6 C 1.38048 * 119.73088 * 186.73301 * 5 3 2 7 7 N 1.34879 * 119.95269 * 179.69867 * 6 5 3 8 8 H 0.96998 * 120.31057 * 180.29578 * 7 6 5 9 9 C 1.34958 * 119.37978 * 0.57087 * 7 6 5 10 10 O 1.21861 * 120.27024 * 179.74051 * 9 7 6 11 11 C 1.41785 * 119.46009 * 359.72562 * 9 7 6 12 12 N 1.30613 * 120.03549 * 359.97438 * 11 9 7 13 13 C 1.46498 * 120.00203 * 179.97438 * 2 1 3 14 14 H 1.08999 * 110.88543 * 183.88536 * 13 2 1 15 15 C 1.54906 * 111.00238 * 307.80509 * 13 2 1 16 16 N 1.47430 * 104.83234 * 155.08340 * 15 13 2 17 17 C 1.36935 * 125.64712 * 155.90619 * 16 15 13 18 18 H 1.07997 * 120.00455 * 0.02562 * 17 16 15 19 19 C 1.38813 * 119.99748 * 180.02562 * 17 16 15 20 20 N 1.31618 * 120.00080 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00194 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.47119 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47256 * 120.00108 * 21 19 17 24 24 H 1.48499 * 109.47060 * 240.00127 * 21 19 17 25 25 C 1.47317 * 108.73337 * 335.71699 * 16 15 13 26 26 C 1.54317 * 107.12120 * 1.29916 * 25 16 15 27 27 H 1.08999 * 110.72207 * 263.52324 * 26 25 16 28 28 O 1.42899 * 110.72254 * 140.42992 * 26 25 16 29 29 H 1.09002 * 109.47031 * 276.14228 * 1 2 3 30 30 H 1.09002 * 109.46851 * 36.13951 * 1 2 3 31 31 H 1.09004 * 109.46624 * 156.14288 * 1 2 3 32 32 H 1.08001 * 120.02301 * 0.02562 * 6 5 3 33 33 H 1.07998 * 119.98591 * 179.97438 * 11 9 7 34 34 H 1.09004 * 110.36873 * 273.92113 * 15 13 2 35 35 H 1.09000 * 110.36928 * 36.13447 * 15 13 2 36 36 H 0.97002 * 120.00242 * 179.97438 * 20 19 17 37 37 H 1.09003 * 110.06348 * 241.87361 * 25 16 15 38 38 H 1.09001 * 109.85259 * 120.61397 * 25 16 15 39 39 H 0.96699 * 114.00094 * 63.84134 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3538 1.1678 0.0497 5 6 1.4023 2.4445 -0.0603 6 6 2.0967 3.6293 -0.2006 7 7 1.4276 4.7988 -0.2623 8 1 1.9100 5.6340 -0.3651 9 6 0.0809 4.7966 -0.1740 10 8 -0.5396 5.8442 -0.2232 11 6 -0.6060 3.5654 -0.0240 12 7 0.0636 2.4451 0.0273 13 6 2.1976 -1.2687 0.0006 14 1 3.2718 -1.0971 0.0695 15 6 1.7075 -2.1922 1.1436 16 7 2.0266 -3.5578 0.6885 17 6 2.2163 -4.6451 1.4989 18 1 2.1345 -4.5407 2.5707 19 6 2.5136 -5.8817 0.9428 20 7 2.6138 -6.0090 -0.3634 21 14 2.7731 -7.3650 2.0482 22 1 2.6072 -6.9598 3.4673 23 1 1.7754 -8.4127 1.7132 24 1 4.1424 -7.9017 1.8430 25 6 2.1032 -3.5604 -0.7827 26 6 1.8485 -2.1130 -1.2534 27 1 0.8036 -1.9762 -1.5318 28 8 2.7084 -1.7774 -2.3443 29 1 -0.3633 0.1100 1.0218 30 1 -0.3633 0.8300 -0.6061 31 1 -0.3633 -0.9399 -0.4157 32 1 3.1747 3.6194 -0.2662 33 1 -1.6836 3.5538 0.0478 34 1 2.2392 -1.9665 2.0680 35 1 0.6329 -2.0800 1.2877 36 1 2.8220 -6.8730 -0.7520 37 1 1.3430 -4.2236 -1.1955 38 1 3.0938 -3.8850 -1.1012 39 1 2.5563 -2.3034 -3.1413 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047505177.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:29:12 Heat of formation + Delta-G solvation = -14.047635 kcal Electronic energy + Delta-G solvation = -25617.616338 eV Core-core repulsion = 21756.202780 eV Total energy + Delta-G solvation = -3861.413558 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.132 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.16157 -39.89976 -38.16604 -37.47163 -35.89002 -35.10539 -34.59966 -31.92640 -30.79079 -28.56372 -27.35739 -26.64808 -25.81000 -24.96456 -24.06974 -21.77853 -20.42855 -19.70769 -18.83180 -18.60656 -17.37249 -17.04888 -16.77598 -16.46412 -16.01481 -15.83074 -15.16822 -15.08155 -14.81056 -14.36037 -14.02110 -13.67350 -13.09344 -13.01432 -12.83312 -12.65589 -12.54907 -12.29965 -12.15416 -11.98105 -11.43068 -11.29856 -11.20920 -10.87139 -10.80226 -10.23643 -10.07276 -9.96685 -9.83455 -9.41071 -9.26564 -8.77954 -8.69719 -8.26402 -6.92426 -5.77094 -3.12117 0.06066 0.87127 2.07055 2.66262 3.03309 3.38068 3.42049 3.43988 3.46174 3.74397 3.80770 4.27747 4.45126 4.56027 4.69572 4.84857 5.25906 5.36471 5.43311 5.46075 5.57543 5.68838 5.71266 5.88216 5.90539 5.91571 6.05969 6.12881 6.24076 6.51207 6.62778 6.85796 7.06452 7.24571 7.34559 7.46883 7.56721 7.72980 8.14959 8.19600 8.23320 9.13252 9.73733 10.36794 11.34414 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.032929 B = 0.003080 C = 0.003016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.118321 B = 9087.793297 C = 9280.754039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.579 5.579 3 C 0.585 3.415 4 O -0.543 6.543 5 C -0.069 4.069 6 C 0.175 3.825 7 N -0.586 5.586 8 H 0.425 0.575 9 C 0.477 3.523 10 O -0.525 6.525 11 C 0.033 3.967 12 N -0.361 5.361 13 C 0.133 3.867 14 H 0.115 0.885 15 C 0.133 3.867 16 N -0.600 5.600 17 C -0.229 4.229 18 H 0.081 0.919 19 C -0.007 4.007 20 N -0.922 5.922 21 Si 0.915 3.085 22 H -0.279 1.279 23 H -0.290 1.290 24 H -0.290 1.290 25 C 0.153 3.847 26 C 0.065 3.935 27 H 0.057 0.943 28 O -0.562 6.562 29 H 0.057 0.943 30 H 0.102 0.898 31 H 0.064 0.936 32 H 0.191 0.809 33 H 0.194 0.806 34 H 0.048 0.952 35 H 0.028 0.972 36 H 0.253 0.747 37 H 0.048 0.952 38 H 0.061 0.939 39 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.788 18.980 -2.385 19.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.309 5.309 3 C 0.372 3.628 4 O -0.421 6.421 5 C -0.192 4.192 6 C 0.039 3.961 7 N -0.219 5.219 8 H 0.265 0.735 9 C 0.273 3.727 10 O -0.401 6.401 11 C -0.156 4.156 12 N -0.077 5.077 13 C 0.029 3.971 14 H 0.133 0.867 15 C 0.006 3.994 16 N -0.328 5.328 17 C -0.357 4.357 18 H 0.099 0.901 19 C -0.203 4.203 20 N -0.570 5.570 21 Si 0.745 3.255 22 H -0.204 1.204 23 H -0.217 1.217 24 H -0.217 1.217 25 C 0.028 3.972 26 C 0.004 3.996 27 H 0.075 0.925 28 O -0.366 6.366 29 H 0.076 0.924 30 H 0.120 0.880 31 H 0.082 0.918 32 H 0.208 0.792 33 H 0.211 0.789 34 H 0.067 0.933 35 H 0.046 0.954 36 H 0.063 0.937 37 H 0.066 0.934 38 H 0.079 0.921 39 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -4.594 18.894 -1.870 19.534 hybrid contribution 0.453 -0.226 -0.044 0.508 sum -4.142 18.667 -1.914 19.217 Atomic orbital electron populations 1.22375 0.78500 1.03248 1.02789 1.47514 1.07724 1.05106 1.70530 1.17179 0.86186 0.82341 0.77140 1.90813 1.12740 1.86719 1.51831 1.20522 0.89541 0.93827 1.15335 1.23214 1.00671 0.84250 0.87977 1.43689 1.09752 1.10405 1.58040 0.73483 1.18814 0.81355 0.93017 0.79536 1.91005 1.64954 1.33654 1.50482 1.24937 1.02209 0.85438 1.03055 1.68353 1.07065 1.28880 1.03381 1.22457 0.98445 0.81116 0.95106 0.86665 1.21762 0.97580 0.85393 0.94687 1.44315 1.83355 1.03240 1.01843 1.19121 1.41326 0.85802 0.89441 0.90075 1.24820 1.01682 0.97761 0.96078 1.69940 1.54874 1.23412 1.08738 0.86000 0.77456 0.82593 0.79427 1.20422 1.21723 1.21677 1.21896 1.01934 0.89095 0.84318 1.23581 0.92152 0.97264 0.86557 0.92538 1.86481 1.62087 1.63874 1.24198 0.92402 0.87998 0.91762 0.79174 0.78885 0.93330 0.95422 0.93689 0.93417 0.92074 0.77960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.93 7.91 59.85 0.47 1.40 16 2 N -0.58 -9.08 2.91 -172.69 -0.50 -9.58 16 3 C 0.59 8.85 7.64 -12.46 -0.10 8.76 16 4 O -0.54 -9.70 15.68 5.28 0.08 -9.62 16 5 C -0.07 -0.76 6.59 -83.12 -0.55 -1.31 16 6 C 0.17 1.33 10.77 -16.28 -0.18 1.15 16 7 N -0.59 -3.73 5.28 -14.19 -0.08 -3.81 16 8 H 0.43 1.48 8.92 -40.82 -0.36 1.11 16 9 C 0.48 4.30 7.74 -14.82 -0.11 4.18 16 10 O -0.53 -6.34 17.95 5.04 0.09 -6.25 16 11 C 0.03 0.27 11.23 -16.72 -0.19 0.09 16 12 N -0.36 -3.61 6.08 -9.34 -0.06 -3.67 16 13 C 0.13 2.52 3.17 -65.79 -0.21 2.31 16 14 H 0.12 2.50 7.01 -51.93 -0.36 2.14 16 15 C 0.13 2.74 6.79 -2.53 -0.02 2.73 16 16 N -0.60 -15.08 3.40 -169.83 -0.58 -15.66 16 17 C -0.23 -6.28 10.28 -15.06 -0.15 -6.43 16 18 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 19 C -0.01 -0.20 5.49 -17.43 -0.10 -0.29 16 20 N -0.92 -26.51 10.31 55.49 0.57 -25.94 16 21 Si 0.91 21.81 29.55 -169.99 -5.02 16.79 16 22 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 24 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 25 C 0.15 3.62 5.16 -2.91 -0.02 3.61 16 26 C 0.06 1.23 3.86 -24.90 -0.10 1.14 16 27 H 0.06 0.98 6.47 -51.93 -0.34 0.65 16 28 O -0.56 -10.28 13.39 -35.23 -0.47 -10.75 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.10 1.15 5.18 -53.13 -0.27 0.87 16 31 H 0.06 0.84 6.36 -51.93 -0.33 0.51 16 32 H 0.19 1.08 7.60 -52.49 -0.40 0.69 16 33 H 0.19 1.12 8.06 -52.49 -0.42 0.69 16 34 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 35 H 0.03 0.54 6.94 -51.93 -0.36 0.18 16 36 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 37 H 0.05 1.22 7.53 -51.93 -0.39 0.83 16 38 H 0.06 1.64 7.28 -51.93 -0.38 1.26 16 39 H 0.37 5.28 9.12 45.56 0.42 5.69 16 LS Contribution 325.39 15.07 4.90 4.90 Total: -1.00 -35.59 325.39 -5.89 -41.48 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -3.60 Total: 4.75 kcal Atomic # 6 Polarization: 18.58 SS G_CDS: -1.23 Total: 17.34 kcal Atomic # 7 Polarization: -58.01 SS G_CDS: -0.64 Total: -58.65 kcal Atomic # 8 Polarization: -26.32 SS G_CDS: -0.30 Total: -26.62 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -35.59 -5.89 -41.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047505177.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.431 kcal (2) G-P(sol) polarization free energy of solvation -35.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds