Wall clock time and date at job start Fri Apr 10 2020 14:31:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35525 * 116.99807 * 2 1 4 4 C 1.39347 * 120.02839 * 180.02562 * 3 2 1 5 5 C 1.38413 * 118.04022 * 179.97438 * 4 3 2 6 6 C 1.39976 * 117.96527 * 0.02562 * 5 4 3 7 7 C 1.47937 * 120.11631 * 179.97438 * 6 5 4 8 8 O 1.21542 * 119.99800 * 0.02562 * 7 6 5 9 9 N 1.34776 * 120.00076 * 179.97438 * 7 6 5 10 10 C 1.46502 * 120.00194 * 180.02562 * 9 7 6 11 11 H 1.09007 * 110.63969 * 34.29840 * 10 9 7 12 12 C 1.54328 * 110.71816 * 271.16559 * 10 9 7 13 13 N 1.47021 * 107.26707 * 219.44134 * 12 10 9 14 14 C 1.36932 * 125.64966 * 178.97640 * 13 12 10 15 15 H 1.08004 * 120.00082 * 359.97438 * 14 13 12 16 16 C 1.38813 * 120.00393 * 179.97438 * 14 13 12 17 17 N 1.31622 * 119.99679 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00446 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47120 * 89.99601 * 18 16 14 20 20 H 1.48497 * 109.47047 * 210.00168 * 18 16 14 21 21 H 1.48498 * 109.46708 * 329.99792 * 18 16 14 22 22 C 1.47431 * 108.70358 * 358.93896 * 13 12 10 23 23 C 1.55118 * 104.94386 * 24.00443 * 22 13 12 24 24 H 1.09001 * 110.93685 * 81.21349 * 23 22 13 25 25 O 1.42898 * 111.16259 * 205.13317 * 23 22 13 26 26 N 1.32750 * 119.77277 * 359.97438 * 6 5 4 27 27 N 1.28365 * 122.08301 * 359.73917 * 26 6 5 28 28 H 1.08998 * 109.47043 * 59.99905 * 1 2 3 29 29 H 1.08996 * 109.46732 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47144 * 300.00306 * 1 2 3 31 31 H 1.08004 * 120.98260 * 359.97438 * 4 3 2 32 32 H 1.08001 * 121.01835 * 179.97438 * 5 4 3 33 33 H 0.97001 * 120.00349 * 0.02562 * 9 7 6 34 34 H 1.08992 * 109.88233 * 338.85351 * 12 10 9 35 35 H 1.08998 * 109.88249 * 99.87183 * 12 10 9 36 36 H 0.96999 * 119.99880 * 180.02562 * 17 16 14 37 37 H 1.09000 * 110.36688 * 142.97205 * 22 13 12 38 38 H 1.09002 * 110.36369 * 265.28951 * 22 13 12 39 39 H 0.96699 * 113.99962 * 292.16748 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2076 0.0000 4 6 3.4358 1.2812 -0.0005 5 6 4.0209 2.5356 -0.0011 6 6 3.1781 3.6531 -0.0005 7 6 3.7527 5.0163 -0.0004 8 8 4.9587 5.1673 -0.0014 9 7 2.9390 6.0907 -0.0004 10 6 3.5081 7.4406 -0.0009 11 1 4.4337 7.4672 -0.5761 12 6 3.7477 7.9327 1.4421 13 7 3.3804 9.3556 1.4846 14 6 3.4297 10.1598 2.5918 15 1 3.7605 9.7568 3.5377 16 6 3.0545 11.4930 2.4986 17 7 2.6519 11.9843 1.3458 18 14 3.1225 12.5903 4.0089 19 1 4.4596 13.2303 4.0960 20 1 2.0770 13.6398 3.9056 21 1 2.8847 11.7729 5.2256 22 6 2.9511 9.7735 0.1376 23 6 2.4862 8.4670 -0.5574 24 1 1.4703 8.2076 -0.2596 25 8 2.5897 8.5737 -1.9786 26 7 1.8612 3.4855 0.0001 27 7 1.3221 2.3206 -0.0049 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 4.0399 0.3860 -0.0005 32 1 5.0950 2.6486 -0.0011 33 1 1.9765 5.9702 0.0000 34 1 3.1238 7.3679 2.1347 35 1 4.7983 7.8106 1.7057 36 1 2.3901 12.9160 1.2806 37 1 2.1260 10.4826 0.2054 38 1 3.7864 10.2133 -0.4074 39 1 1.9704 9.2036 -2.3719 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077947656.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:31:40 Heat of formation + Delta-G solvation = -21.482740 kcal Electronic energy + Delta-G solvation = -24872.920196 eV Core-core repulsion = 21011.184227 eV Total energy + Delta-G solvation = -3861.735969 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.132 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.64326 -39.76721 -38.72980 -37.72969 -35.08534 -34.24823 -33.53679 -32.38031 -31.49799 -28.54027 -27.99067 -27.06874 -25.56821 -24.54488 -24.00274 -21.42843 -20.62121 -20.03320 -19.11164 -18.34657 -17.88702 -16.97591 -16.83610 -16.73991 -15.67736 -15.24165 -15.11671 -14.91175 -14.68110 -14.42803 -14.16602 -13.81084 -13.74613 -13.25106 -12.88891 -12.49387 -12.35708 -12.25196 -12.01493 -11.88283 -11.51943 -11.29282 -11.01428 -10.83702 -10.68021 -10.23406 -10.15503 -10.06666 -9.92504 -9.72797 -9.54606 -9.30499 -8.83834 -8.71946 -6.92520 -5.72385 -3.14830 0.23883 0.37690 2.40849 2.54263 3.03317 3.38329 3.42878 3.44092 3.45086 3.62003 3.91437 4.36194 4.42511 4.49837 4.61390 4.66512 4.81278 4.87928 5.05979 5.21369 5.24720 5.38263 5.41881 5.62094 5.62964 5.67533 5.84963 6.07476 6.17882 6.40850 6.51357 6.64393 6.86822 7.31545 7.50604 7.57806 7.72070 8.10103 8.11836 8.22203 8.26825 9.13635 9.74000 10.36250 11.31947 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.023130 B = 0.002849 C = 0.002793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.262589 B = 9825.733124 C =10023.902884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.297 6.297 3 C 0.275 3.725 4 C -0.140 4.140 5 C -0.031 4.031 6 C 0.000 4.000 7 C 0.578 3.422 8 O -0.529 6.529 9 N -0.690 5.690 10 C 0.139 3.861 11 H 0.104 0.896 12 C 0.130 3.870 13 N -0.600 5.600 14 C -0.222 4.222 15 H 0.080 0.920 16 C -0.011 4.011 17 N -0.924 5.924 18 Si 0.918 3.082 19 H -0.288 1.288 20 H -0.290 1.290 21 H -0.281 1.281 22 C 0.130 3.870 23 C 0.067 3.933 24 H 0.064 0.936 25 O -0.565 6.565 26 N -0.169 5.169 27 N -0.298 5.298 28 H 0.066 0.934 29 H 0.103 0.897 30 H 0.066 0.934 31 H 0.164 0.836 32 H 0.172 0.828 33 H 0.409 0.591 34 H 0.032 0.968 35 H 0.035 0.965 36 H 0.253 0.747 37 H 0.114 0.886 38 H 0.026 0.974 39 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.739 -21.844 -5.199 22.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.201 6.201 3 C 0.091 3.909 4 C -0.169 4.169 5 C -0.059 4.059 6 C -0.149 4.149 7 C 0.361 3.639 8 O -0.404 6.404 9 N -0.340 5.340 10 C 0.035 3.965 11 H 0.122 0.878 12 C 0.003 3.997 13 N -0.327 5.327 14 C -0.350 4.350 15 H 0.098 0.902 16 C -0.206 4.206 17 N -0.573 5.573 18 Si 0.748 3.252 19 H -0.215 1.215 20 H -0.216 1.216 21 H -0.206 1.206 22 C 0.005 3.995 23 C 0.007 3.993 24 H 0.082 0.918 25 O -0.370 6.370 26 N -0.017 5.017 27 N -0.156 5.156 28 H 0.084 0.916 29 H 0.121 0.879 30 H 0.084 0.916 31 H 0.182 0.818 32 H 0.189 0.811 33 H 0.245 0.755 34 H 0.049 0.951 35 H 0.053 0.947 36 H 0.064 0.936 37 H 0.131 0.869 38 H 0.044 0.956 39 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -3.854 -21.596 -5.044 22.509 hybrid contribution 0.292 0.264 0.696 0.800 sum -3.562 -21.331 -4.348 22.060 Atomic orbital electron populations 1.23080 0.76112 1.03800 1.03284 1.86215 1.23789 1.23212 1.86868 1.21675 0.91084 0.87192 0.90969 1.21536 0.92178 0.99924 1.03303 1.22333 1.03171 0.89995 0.90414 1.22800 0.91926 0.96426 1.03786 1.17379 0.86323 0.82848 0.77396 1.90819 1.13643 1.85655 1.50325 1.45856 1.10552 1.05441 1.72166 1.22138 0.97886 0.78744 0.97762 0.87801 1.21623 0.98436 0.87197 0.92456 1.44277 1.77238 1.04568 1.06656 1.19104 1.37567 0.90719 0.87644 0.90173 1.24804 1.01553 0.96836 0.97419 1.69734 1.50861 1.13942 1.22742 0.86013 0.77350 0.80196 0.81595 1.21526 1.21604 1.20626 1.22590 1.00911 0.91997 0.84050 1.23672 0.97106 0.98000 0.80572 0.91797 1.86403 1.64228 1.66221 1.20158 1.73009 1.10150 1.13999 1.04530 1.73201 1.31239 0.93999 1.17206 0.91575 0.87895 0.91559 0.81843 0.81102 0.75469 0.95052 0.94666 0.93578 0.86881 0.95597 0.77483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 10.39 101.05 1.05 1.25 16 2 O -0.30 -2.63 10.48 -18.27 -0.19 -2.82 16 3 C 0.27 2.84 7.57 -16.77 -0.13 2.72 16 4 C -0.14 -1.20 10.14 -39.10 -0.40 -1.60 16 5 C -0.03 -0.31 9.72 -38.87 -0.38 -0.69 16 6 C 0.00 0.00 6.83 -82.85 -0.57 -0.57 16 7 C 0.58 9.23 7.81 -12.29 -0.10 9.13 16 8 O -0.53 -9.72 16.07 5.33 0.09 -9.64 16 9 N -0.69 -11.19 5.11 -52.94 -0.27 -11.46 16 10 C 0.14 2.65 3.00 -66.09 -0.20 2.45 16 11 H 0.10 2.14 7.62 -51.93 -0.40 1.75 16 12 C 0.13 2.83 7.00 -3.06 -0.02 2.80 16 13 N -0.60 -15.31 3.40 -169.94 -0.58 -15.89 16 14 C -0.22 -6.15 10.27 -15.06 -0.15 -6.30 16 15 H 0.08 2.15 7.83 -52.48 -0.41 1.74 16 16 C -0.01 -0.30 5.49 -17.43 -0.10 -0.39 16 17 N -0.92 -26.30 10.09 55.49 0.56 -25.74 16 18 Si 0.92 21.84 29.55 -169.99 -5.02 16.82 16 19 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 20 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 22 C 0.13 3.09 5.63 -2.41 -0.01 3.08 16 23 C 0.07 1.27 4.06 -24.47 -0.10 1.17 16 24 H 0.06 1.14 8.00 -51.93 -0.42 0.72 16 25 O -0.57 -9.75 13.48 -35.23 -0.47 -10.22 16 26 N -0.17 -2.28 10.73 33.32 0.36 -1.92 16 27 N -0.30 -3.69 10.40 30.55 0.32 -3.37 16 28 H 0.07 0.43 8.11 -51.93 -0.42 0.01 16 29 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.44 8.11 -51.93 -0.42 0.01 16 31 H 0.16 0.86 8.06 -52.48 -0.42 0.44 16 32 H 0.17 1.47 7.71 -52.49 -0.40 1.06 16 33 H 0.41 6.01 7.89 -40.82 -0.32 5.69 16 34 H 0.03 0.67 8.03 -51.93 -0.42 0.25 16 35 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 37 H 0.11 2.93 5.88 -51.93 -0.31 2.63 16 38 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.38 4.95 9.12 45.56 0.42 5.36 16 LS Contribution 337.63 15.07 5.09 5.09 Total: -1.00 -33.18 337.63 -5.15 -38.32 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -3.92 Total: 7.77 kcal Atomic # 6 Polarization: 14.14 SS G_CDS: -1.10 Total: 13.05 kcal Atomic # 7 Polarization: -58.77 SS G_CDS: 0.39 Total: -58.38 kcal Atomic # 8 Polarization: -22.09 SS G_CDS: -0.58 Total: -22.67 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.18 -5.15 -38.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077947656.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.842 kcal (2) G-P(sol) polarization free energy of solvation -33.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds