Wall clock time and date at job start Fri Apr 10 2020 14:32:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35744 * 116.99755 * 2 1 4 4 C 1.39284 * 120.84561 * 0.02562 * 3 2 1 5 5 C 1.37954 * 119.08995 * 179.97438 * 4 3 2 6 6 N 1.31973 * 120.82461 * 359.73933 * 5 4 3 7 7 C 1.31947 * 121.86370 * 0.53456 * 6 5 4 8 8 C 1.37994 * 120.82167 * 359.46463 * 7 6 5 9 9 C 1.50697 * 120.45838 * 180.23639 * 8 7 6 10 10 N 1.46504 * 109.47110 * 260.00736 * 9 8 7 11 11 C 1.34781 * 119.99591 * 179.97438 * 10 9 8 12 12 O 1.21581 * 120.00305 * 359.97438 * 11 10 9 13 13 N 1.34773 * 119.99376 * 179.97438 * 11 10 9 14 14 C 1.46501 * 119.99798 * 180.02562 * 13 11 10 15 15 C 1.50702 * 109.47311 * 180.02562 * 14 13 11 16 16 O 1.21288 * 119.99966 * 0.02562 * 15 14 13 17 17 N 1.34780 * 120.00030 * 179.97438 * 15 14 13 18 18 C 1.37098 * 119.99767 * 179.97438 * 17 15 14 19 19 H 1.07999 * 120.00274 * 0.02562 * 18 17 15 20 20 C 1.38954 * 119.99887 * 179.97438 * 18 17 15 21 21 N 1.31412 * 119.99606 * 359.97438 * 20 18 17 22 22 Si 1.86793 * 119.99851 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47602 * 0.02562 * 22 20 18 24 24 H 1.48509 * 109.46910 * 120.00488 * 22 20 18 25 25 H 1.48500 * 109.47144 * 239.99605 * 22 20 18 26 26 H 1.09004 * 109.47092 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.47294 * 300.00291 * 1 2 3 28 28 H 1.08997 * 109.47193 * 60.00413 * 1 2 3 29 29 H 1.07995 * 120.45814 * 359.95897 * 4 3 2 30 30 H 1.08004 * 119.58569 * 179.97438 * 5 4 3 31 31 H 1.08002 * 119.59362 * 179.75291 * 7 6 5 32 32 H 1.08996 * 109.46937 * 20.00116 * 9 8 7 33 33 H 1.08998 * 109.47563 * 140.00560 * 9 8 7 34 34 H 0.97001 * 120.00318 * 359.97438 * 10 9 8 35 35 H 0.96996 * 120.00695 * 0.02562 * 13 11 10 36 36 H 1.09000 * 109.47303 * 299.99728 * 14 13 11 37 37 H 1.08992 * 109.47418 * 59.99982 * 14 13 11 38 38 H 0.96995 * 119.99900 * 359.97438 * 17 15 14 39 39 H 0.97001 * 119.99445 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2095 0.0000 4 6 1.3039 2.3887 0.0005 5 6 1.9675 3.5981 0.0011 6 7 3.2864 3.6458 0.0062 7 6 4.0230 2.5511 0.0006 8 6 3.4346 1.3029 0.0001 9 6 4.2838 0.0580 -0.0010 10 7 4.3605 -0.4796 -1.3617 11 6 5.0723 -1.5979 -1.6052 12 8 5.6511 -2.1603 -0.6958 13 7 5.1423 -2.0928 -2.8568 14 6 5.9156 -3.3087 -3.1215 15 6 5.8336 -3.6469 -4.5877 16 8 5.1928 -2.9415 -5.3380 17 7 6.4733 -4.7328 -5.0656 18 6 6.3982 -5.0407 -6.3995 19 1 5.8270 -4.4130 -7.0673 20 6 7.0581 -6.1599 -6.8923 21 7 7.7545 -6.9228 -6.0799 22 14 6.9565 -6.5791 -8.7097 23 1 6.1184 -5.5692 -9.4047 24 1 8.3213 -6.5767 -9.2953 25 1 6.3498 -7.9244 -8.8743 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 0.2244 2.3567 0.0003 30 1 1.4006 4.5174 0.0011 31 1 5.0999 2.6329 0.0011 32 1 5.2864 0.3019 0.3502 33 1 3.8385 -0.6862 0.6592 34 1 3.8990 -0.0308 -2.0873 35 1 4.6809 -1.6440 -3.5824 36 1 6.9569 -3.1446 -2.8446 37 1 5.5092 -4.1326 -2.5350 38 1 6.9866 -5.2963 -4.4659 39 1 8.2148 -7.7042 -6.4238 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117739091.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:32:06 Heat of formation + Delta-G solvation = -65.847376 kcal Electronic energy + Delta-G solvation = -24054.838274 eV Core-core repulsion = 20191.178511 eV Total energy + Delta-G solvation = -3863.659764 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.132 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.16589 -39.69833 -38.61189 -38.17177 -35.29754 -34.34924 -33.60493 -31.97556 -31.63456 -31.33413 -28.17003 -27.80495 -26.10751 -24.33110 -23.32267 -22.39410 -20.67678 -19.55623 -18.82781 -18.40295 -17.95378 -17.54161 -16.48666 -16.14558 -15.66271 -15.51665 -15.29897 -15.24516 -14.65849 -14.64398 -14.36274 -14.14465 -13.97239 -13.88736 -13.45050 -13.25496 -12.91179 -12.51758 -12.15064 -12.03438 -11.84473 -11.61960 -11.55901 -11.13076 -10.39913 -10.31412 -10.11763 -9.90626 -9.62983 -9.58582 -9.22313 -9.09992 -8.60077 -8.54814 -8.08025 -6.49790 -3.91616 0.59758 0.91305 2.67902 2.88997 3.11316 3.23350 3.30109 3.44833 3.46402 3.77706 4.00903 4.11232 4.20054 4.36666 4.51525 4.55090 4.66878 4.69262 4.88710 4.93492 5.03913 5.12806 5.19131 5.26393 5.47684 5.64595 5.76524 5.95648 6.04576 6.11209 6.13482 6.50990 6.72864 6.80162 7.13987 7.47849 7.60393 7.94681 8.28224 8.47439 8.84512 9.06660 9.41836 9.89814 10.67275 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.025991 B = 0.002283 C = 0.002251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.021267 B =12262.003146 C =12433.878482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.299 6.299 3 C 0.186 3.814 4 C -0.266 4.266 5 C 0.141 3.859 6 N -0.510 5.510 7 C 0.155 3.845 8 C -0.193 4.193 9 C 0.197 3.803 10 N -0.743 5.743 11 C 0.707 3.293 12 O -0.598 6.598 13 N -0.725 5.725 14 C 0.129 3.871 15 C 0.430 3.570 16 O -0.598 6.598 17 N -0.550 5.550 18 C -0.304 4.304 19 H 0.106 0.894 20 C 0.025 3.975 21 N -0.895 5.895 22 Si 0.932 3.068 23 H -0.267 1.267 24 H -0.280 1.280 25 H -0.280 1.280 26 H 0.106 0.894 27 H 0.058 0.942 28 H 0.060 0.940 29 H 0.140 0.860 30 H 0.159 0.841 31 H 0.166 0.834 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.395 0.605 35 H 0.406 0.594 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.396 0.604 39 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.010 16.576 13.885 25.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.209 6.209 3 C 0.131 3.869 4 C -0.287 4.287 5 C -0.016 4.016 6 N -0.222 5.222 7 C -0.002 4.002 8 C -0.196 4.196 9 C 0.073 3.927 10 N -0.399 5.399 11 C 0.406 3.594 12 O -0.477 6.477 13 N -0.382 5.382 14 C 0.000 4.000 15 C 0.215 3.785 16 O -0.485 6.485 17 N -0.185 5.185 18 C -0.433 4.433 19 H 0.123 0.877 20 C -0.178 4.178 21 N -0.535 5.535 22 Si 0.759 3.241 23 H -0.192 1.192 24 H -0.206 1.206 25 H -0.206 1.206 26 H 0.124 0.876 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.158 0.842 30 H 0.176 0.824 31 H 0.183 0.817 32 H 0.095 0.905 33 H 0.096 0.904 34 H 0.229 0.771 35 H 0.243 0.757 36 H 0.100 0.900 37 H 0.100 0.900 38 H 0.230 0.770 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -12.300 16.877 14.177 25.241 hybrid contribution -0.922 -0.939 -1.194 1.777 sum -13.222 15.937 12.983 24.442 Atomic orbital electron populations 1.23196 0.77534 1.04779 1.01581 1.86179 1.21987 1.25773 1.86996 1.19266 0.91911 0.84906 0.90785 1.22251 1.01701 0.93131 1.11640 1.22634 0.90349 0.97043 0.91527 1.67806 1.07065 1.31915 1.15370 1.22717 1.00570 0.85934 0.90981 1.20413 0.91214 0.97493 1.10491 1.19662 0.98376 0.90941 0.83737 1.45033 1.56037 1.28527 1.10326 1.15809 0.79848 0.80489 0.83235 1.90903 1.51052 1.61757 1.43999 1.44760 1.55599 1.29412 1.08420 1.20778 0.96646 0.86968 0.95569 1.19785 0.85476 0.84372 0.88851 1.90488 1.46681 1.52411 1.58882 1.41797 1.43924 1.22857 1.09941 1.19771 1.30072 1.09437 0.84033 0.87669 1.25326 0.96089 0.95882 1.00506 1.69627 1.31912 1.16249 1.35712 0.85760 0.78123 0.78446 0.81761 1.19167 1.20625 1.20637 0.87578 0.92313 0.92164 0.84185 0.82411 0.81710 0.90452 0.90426 0.77114 0.75666 0.89992 0.90028 0.77006 0.91664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.84 101.05 0.99 1.12 16 2 O -0.30 -2.79 9.86 -18.94 -0.19 -2.98 16 3 C 0.19 1.69 6.70 -38.82 -0.26 1.43 16 4 C -0.27 -1.92 9.11 -39.30 -0.36 -2.27 16 5 C 0.14 1.07 11.17 -17.60 -0.20 0.87 16 6 N -0.51 -4.91 10.36 -13.33 -0.14 -5.05 16 7 C 0.15 1.39 10.82 -17.59 -0.19 1.20 16 8 C -0.19 -1.83 5.28 -104.34 -0.55 -2.38 16 9 C 0.20 2.20 5.53 -5.19 -0.03 2.17 16 10 N -0.74 -9.44 5.55 -66.42 -0.37 -9.81 16 11 C 0.71 11.78 8.57 -86.92 -0.74 11.04 16 12 O -0.60 -11.89 16.34 5.29 0.09 -11.80 16 13 N -0.72 -12.51 5.53 -66.42 -0.37 -12.87 16 14 C 0.13 2.44 6.15 -5.19 -0.03 2.41 16 15 C 0.43 9.96 7.85 -10.98 -0.09 9.88 16 16 O -0.60 -15.43 15.24 5.55 0.08 -15.34 16 17 N -0.55 -13.76 5.29 -10.96 -0.06 -13.82 16 18 C -0.30 -8.30 9.68 -14.93 -0.14 -8.44 16 19 H 0.11 3.00 7.16 -52.49 -0.38 2.62 16 20 C 0.02 0.65 5.50 -17.47 -0.10 0.55 16 21 N -0.89 -24.03 13.05 55.50 0.72 -23.30 16 22 Si 0.93 20.62 29.55 -169.99 -5.02 15.60 16 23 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 24 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 25 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 26 H 0.11 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.23 7.71 -51.92 -0.40 -0.17 16 28 H 0.06 0.27 7.71 -51.93 -0.40 -0.13 16 29 H 0.14 0.65 6.47 -52.49 -0.34 0.31 16 30 H 0.16 0.74 8.06 -52.48 -0.42 0.32 16 31 H 0.17 1.18 8.04 -52.49 -0.42 0.76 16 32 H 0.08 0.83 8.02 -51.93 -0.42 0.41 16 33 H 0.08 0.96 7.92 -51.93 -0.41 0.55 16 34 H 0.40 4.41 8.48 -40.82 -0.35 4.06 16 35 H 0.41 6.85 7.45 -40.82 -0.30 6.55 16 36 H 0.08 1.50 8.14 -51.93 -0.42 1.07 16 37 H 0.08 1.50 8.14 -51.93 -0.42 1.07 16 38 H 0.40 9.53 7.90 -40.82 -0.32 9.21 16 39 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 345.95 15.07 5.21 5.21 Total: -1.00 -33.95 345.95 -6.29 -40.24 By element: Atomic # 1 Polarization: 20.92 SS G_CDS: -4.56 Total: 16.35 kcal Atomic # 6 Polarization: 19.27 SS G_CDS: -1.69 Total: 17.58 kcal Atomic # 7 Polarization: -64.65 SS G_CDS: -0.21 Total: -64.86 kcal Atomic # 8 Polarization: -30.10 SS G_CDS: -0.02 Total: -30.12 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -33.95 -6.29 -40.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117739091.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.609 kcal (2) G-P(sol) polarization free energy of solvation -33.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds