Wall clock time and date at job start Fri Apr 10 2020 14:32:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35744 * 116.99755 * 2 1 4 4 C 1.39284 * 120.84561 * 0.02562 * 3 2 1 5 5 C 1.37954 * 119.08995 * 179.97438 * 4 3 2 6 6 N 1.31973 * 120.82461 * 359.73933 * 5 4 3 7 7 C 1.31947 * 121.86370 * 0.53456 * 6 5 4 8 8 C 1.37994 * 120.82167 * 359.46463 * 7 6 5 9 9 C 1.50697 * 120.45838 * 180.23639 * 8 7 6 10 10 N 1.46504 * 109.47110 * 260.00736 * 9 8 7 11 11 C 1.34781 * 119.99591 * 179.97438 * 10 9 8 12 12 O 1.21581 * 120.00305 * 359.97438 * 11 10 9 13 13 N 1.34773 * 119.99376 * 179.97438 * 11 10 9 14 14 C 1.46501 * 119.99798 * 180.02562 * 13 11 10 15 15 C 1.50702 * 109.47311 * 180.02562 * 14 13 11 16 16 O 1.21288 * 119.99966 * 0.02562 * 15 14 13 17 17 N 1.34780 * 120.00030 * 179.97438 * 15 14 13 18 18 C 1.37098 * 119.99767 * 179.97438 * 17 15 14 19 19 H 1.07999 * 120.00274 * 0.02562 * 18 17 15 20 20 C 1.38954 * 119.99887 * 179.97438 * 18 17 15 21 21 N 1.31412 * 119.99606 * 359.97438 * 20 18 17 22 22 Si 1.86793 * 119.99851 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47602 * 0.02562 * 22 20 18 24 24 H 1.48509 * 109.46910 * 120.00488 * 22 20 18 25 25 H 1.48500 * 109.47144 * 239.99605 * 22 20 18 26 26 H 1.09004 * 109.47092 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.47294 * 300.00291 * 1 2 3 28 28 H 1.08997 * 109.47193 * 60.00413 * 1 2 3 29 29 H 1.07995 * 120.45814 * 359.95897 * 4 3 2 30 30 H 1.08004 * 119.58569 * 179.97438 * 5 4 3 31 31 H 1.08002 * 119.59362 * 179.75291 * 7 6 5 32 32 H 1.08996 * 109.46937 * 20.00116 * 9 8 7 33 33 H 1.08998 * 109.47563 * 140.00560 * 9 8 7 34 34 H 0.97001 * 120.00318 * 359.97438 * 10 9 8 35 35 H 0.96996 * 120.00695 * 0.02562 * 13 11 10 36 36 H 1.09000 * 109.47303 * 299.99728 * 14 13 11 37 37 H 1.08992 * 109.47418 * 59.99982 * 14 13 11 38 38 H 0.96995 * 119.99900 * 359.97438 * 17 15 14 39 39 H 0.97001 * 119.99445 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2095 0.0000 4 6 1.3039 2.3887 0.0005 5 6 1.9675 3.5981 0.0011 6 7 3.2864 3.6458 0.0062 7 6 4.0230 2.5511 0.0006 8 6 3.4346 1.3029 0.0001 9 6 4.2838 0.0580 -0.0010 10 7 4.3605 -0.4796 -1.3617 11 6 5.0723 -1.5979 -1.6052 12 8 5.6511 -2.1603 -0.6958 13 7 5.1423 -2.0928 -2.8568 14 6 5.9156 -3.3087 -3.1215 15 6 5.8336 -3.6469 -4.5877 16 8 5.1928 -2.9415 -5.3380 17 7 6.4733 -4.7328 -5.0656 18 6 6.3982 -5.0407 -6.3995 19 1 5.8270 -4.4130 -7.0673 20 6 7.0581 -6.1599 -6.8923 21 7 7.7545 -6.9228 -6.0799 22 14 6.9565 -6.5791 -8.7097 23 1 6.1184 -5.5692 -9.4047 24 1 8.3213 -6.5767 -9.2953 25 1 6.3498 -7.9244 -8.8743 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 0.2244 2.3567 0.0003 30 1 1.4006 4.5174 0.0011 31 1 5.0999 2.6329 0.0011 32 1 5.2864 0.3019 0.3502 33 1 3.8385 -0.6862 0.6592 34 1 3.8990 -0.0308 -2.0873 35 1 4.6809 -1.6440 -3.5824 36 1 6.9569 -3.1446 -2.8446 37 1 5.5092 -4.1326 -2.5350 38 1 6.9866 -5.2963 -4.4659 39 1 8.2148 -7.7042 -6.4238 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117739091.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:32:06 Heat of formation + Delta-G solvation = -93.335441 kcal Electronic energy + Delta-G solvation = -24056.030246 eV Core-core repulsion = 20191.178511 eV Total energy + Delta-G solvation = -3864.851735 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.132 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.83730 -41.07165 -39.98729 -39.21639 -36.43634 -36.11173 -35.24738 -33.38277 -32.81321 -32.23565 -29.41308 -28.50292 -27.28435 -26.07256 -23.92221 -23.15367 -21.98752 -21.35425 -20.12229 -19.70930 -19.28893 -18.19199 -17.60733 -17.42143 -16.86940 -16.84594 -16.47419 -16.10877 -15.95929 -15.88826 -15.69758 -15.26321 -15.14217 -15.11499 -14.50913 -14.13753 -14.04707 -13.90725 -13.54463 -13.42774 -13.03743 -12.90274 -12.51612 -12.43914 -12.13924 -12.10845 -11.57332 -11.50761 -10.59054 -10.54766 -10.41288 -10.20453 -10.09498 -9.89517 -9.79635 -8.50433 -6.00507 -0.03650 0.27679 1.35649 1.43098 1.56658 1.68243 1.90582 2.12918 2.15090 2.29351 2.76007 3.08990 3.16857 3.37728 3.41654 3.61943 3.78485 3.88031 4.17733 4.22970 4.31846 4.34601 4.43374 4.45547 4.48599 4.68176 4.70256 4.73093 4.90867 5.05154 5.32006 5.39388 5.42799 5.54154 5.90660 5.94554 6.17834 6.49019 6.97919 7.02084 7.04345 7.43468 7.53524 7.95494 8.66808 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.025991 B = 0.002283 C = 0.002251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.021267 B =12262.003146 C =12433.878482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.323 6.323 3 C 0.176 3.824 4 C -0.260 4.260 5 C 0.138 3.862 6 N -0.533 5.533 7 C 0.151 3.849 8 C -0.203 4.203 9 C 0.201 3.799 10 N -0.726 5.726 11 C 0.707 3.293 12 O -0.630 6.630 13 N -0.724 5.724 14 C 0.142 3.858 15 C 0.434 3.566 16 O -0.624 6.624 17 N -0.560 5.560 18 C -0.336 4.336 19 H 0.086 0.914 20 C -0.012 4.012 21 N -0.916 5.916 22 Si 0.997 3.003 23 H -0.270 1.270 24 H -0.271 1.271 25 H -0.271 1.271 26 H 0.112 0.888 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.168 0.832 30 H 0.187 0.813 31 H 0.176 0.824 32 H 0.081 0.919 33 H 0.064 0.936 34 H 0.405 0.595 35 H 0.409 0.591 36 H 0.093 0.907 37 H 0.091 0.909 38 H 0.399 0.601 39 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.079 17.450 13.869 26.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.234 6.234 3 C 0.121 3.879 4 C -0.281 4.281 5 C -0.017 4.017 6 N -0.245 5.245 7 C -0.005 4.005 8 C -0.207 4.207 9 C 0.077 3.923 10 N -0.382 5.382 11 C 0.407 3.593 12 O -0.512 6.512 13 N -0.382 5.382 14 C 0.013 3.987 15 C 0.221 3.779 16 O -0.512 6.512 17 N -0.195 5.195 18 C -0.465 4.465 19 H 0.104 0.896 20 C -0.212 4.212 21 N -0.556 5.556 22 Si 0.821 3.179 23 H -0.194 1.194 24 H -0.196 1.196 25 H -0.196 1.196 26 H 0.130 0.870 27 H 0.094 0.906 28 H 0.090 0.910 29 H 0.185 0.815 30 H 0.204 0.796 31 H 0.193 0.807 32 H 0.099 0.901 33 H 0.082 0.918 34 H 0.240 0.760 35 H 0.246 0.754 36 H 0.111 0.889 37 H 0.109 0.891 38 H 0.233 0.767 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -13.395 17.782 14.182 26.396 hybrid contribution -0.682 -1.141 -1.123 1.740 sum -14.077 16.641 13.059 25.409 Atomic orbital electron populations 1.23447 0.75737 1.05727 1.02974 1.86148 1.24004 1.26218 1.87026 1.19460 0.91965 0.85589 0.90840 1.22514 1.03009 0.92143 1.10388 1.23168 0.89934 0.98408 0.90225 1.67851 1.08229 1.32097 1.16320 1.22890 1.01247 0.85700 0.90656 1.20260 0.91484 0.96745 1.12186 1.19654 0.98917 0.91345 0.82339 1.44975 1.54646 1.27102 1.11450 1.15883 0.79917 0.81084 0.82426 1.90880 1.52574 1.62973 1.44764 1.44683 1.55628 1.29024 1.08861 1.20589 0.97703 0.88087 0.92285 1.20421 0.83880 0.83190 0.90363 1.90465 1.47469 1.53042 1.60269 1.41842 1.44609 1.23597 1.09491 1.19765 1.31410 1.10333 0.84980 0.89611 1.26138 0.95204 0.95209 1.04676 1.69690 1.32027 1.16528 1.37399 0.84805 0.78361 0.78233 0.76534 1.19441 1.19649 1.19618 0.87019 0.90623 0.90983 0.81484 0.79586 0.80655 0.90094 0.91804 0.76023 0.75367 0.88932 0.89059 0.76670 0.91078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.84 113.37 1.12 1.25 16 2 O -0.32 -5.69 9.86 -90.68 -0.89 -6.58 16 3 C 0.18 2.97 6.70 22.76 0.15 3.13 16 4 C -0.26 -3.13 9.11 22.45 0.20 -2.93 16 5 C 0.14 1.78 11.17 84.60 0.95 2.73 16 6 N -0.53 -9.48 10.36 -196.08 -2.03 -11.51 16 7 C 0.15 2.60 10.82 84.62 0.92 3.51 16 8 C -0.20 -3.71 5.28 -19.68 -0.10 -3.82 16 9 C 0.20 4.43 5.53 85.63 0.47 4.91 16 10 N -0.73 -18.09 5.55 -482.30 -2.68 -20.77 16 11 C 0.71 23.27 8.57 179.05 1.53 24.81 16 12 O -0.63 -24.90 16.34 -3.97 -0.06 -24.96 16 13 N -0.72 -24.67 5.53 -482.31 -2.67 -27.34 16 14 C 0.14 5.33 6.15 85.63 0.53 5.85 16 15 C 0.43 20.26 7.85 87.66 0.69 20.95 16 16 O -0.62 -32.50 15.24 -3.05 -0.05 -32.55 16 17 N -0.56 -28.34 5.29 -306.98 -1.62 -29.96 16 18 C -0.34 -18.57 9.68 84.04 0.81 -17.76 16 19 H 0.09 5.00 7.16 -2.91 -0.02 4.98 16 20 C -0.01 -0.61 5.50 84.93 0.47 -0.15 16 21 N -0.92 -48.89 13.05 21.66 0.28 -48.61 16 22 Si 1.00 41.88 29.55 68.60 2.03 43.91 16 23 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 24 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 25 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 26 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.08 0.42 7.71 -2.38 -0.02 0.40 16 28 H 0.07 0.48 7.71 -2.39 -0.02 0.46 16 29 H 0.17 1.00 6.47 -2.91 -0.02 0.98 16 30 H 0.19 1.18 8.06 -2.91 -0.02 1.16 16 31 H 0.18 2.40 8.04 -2.91 -0.02 2.38 16 32 H 0.08 1.72 8.02 -2.39 -0.02 1.70 16 33 H 0.06 1.60 7.92 -2.39 -0.02 1.58 16 34 H 0.40 8.71 8.48 -92.71 -0.79 7.93 16 35 H 0.41 13.63 7.45 -92.71 -0.69 12.94 16 36 H 0.09 3.32 8.14 -2.39 -0.02 3.30 16 37 H 0.09 3.29 8.14 -2.39 -0.02 3.27 16 38 H 0.40 19.42 7.90 -92.71 -0.73 18.69 16 39 H 0.28 13.91 8.31 -92.71 -0.77 13.14 16 Total: -1.00 -72.20 345.95 -1.04 -73.24 By element: Atomic # 1 Polarization: 43.72 SS G_CDS: -1.08 Total: 42.64 kcal Atomic # 6 Polarization: 34.76 SS G_CDS: 7.73 Total: 42.49 kcal Atomic # 7 Polarization: -129.47 SS G_CDS: -8.72 Total: -138.19 kcal Atomic # 8 Polarization: -63.08 SS G_CDS: -1.01 Total: -64.09 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 2.03 Total: 43.91 kcal Total: -72.20 -1.04 -73.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117739091.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.091 kcal (2) G-P(sol) polarization free energy of solvation -72.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds