Wall clock time and date at job start Fri Apr 10 2020 14:35:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47389 * 2 1 4 4 C 1.50705 * 109.46782 * 240.00020 * 2 1 3 5 5 H 1.08004 * 120.00066 * 239.99453 * 4 2 1 6 6 C 1.37876 * 119.99923 * 60.00308 * 4 2 1 7 7 N 1.31514 * 120.00038 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99634 * 179.97438 * 6 4 2 9 9 H 1.48493 * 109.47135 * 89.99970 * 8 6 4 10 10 H 1.48505 * 109.46798 * 209.99499 * 8 6 4 11 11 H 1.48497 * 109.47451 * 329.99779 * 8 6 4 12 12 O 1.45202 * 109.47404 * 120.00037 * 2 1 3 13 13 C 1.34227 * 117.00265 * 270.00071 * 12 2 1 14 14 O 1.20830 * 119.99445 * 359.97438 * 13 12 2 15 15 C 1.50696 * 120.00302 * 180.02562 * 13 12 2 16 16 N 1.46494 * 109.47466 * 179.97438 * 15 13 12 17 17 C 1.34009 * 124.22468 * 89.96979 * 16 15 13 18 18 O 1.21541 * 123.81505 * 359.94235 * 17 16 15 19 19 N 1.34980 * 112.36947 * 179.97438 * 17 16 15 20 20 C 1.45939 * 105.99523 * 0.02562 * 19 17 16 21 21 C 1.53571 * 112.01135 * 238.41429 * 20 19 17 22 22 C 1.54499 * 104.08611 * 275.02034 * 21 20 19 23 23 C 1.53977 * 106.66178 * 337.67240 * 22 21 20 24 24 C 1.53571 * 112.01079 * 121.58181 * 20 19 17 25 25 C 1.35208 * 124.22026 * 269.95417 * 16 15 13 26 26 O 1.21235 * 127.46858 * 0.03162 * 25 16 15 27 27 H 1.08994 * 109.47089 * 60.00098 * 1 2 3 28 28 H 1.09001 * 109.47105 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46774 * 299.99903 * 1 2 3 30 30 H 0.96995 * 119.99772 * 180.02562 * 7 6 4 31 31 H 1.09000 * 109.47200 * 59.99252 * 15 13 12 32 32 H 1.09000 * 109.46739 * 299.99853 * 15 13 12 33 33 H 0.97002 * 127.00288 * 180.02562 * 19 17 16 34 34 H 1.08999 * 110.50635 * 156.36822 * 21 20 19 35 35 H 1.08999 * 110.50963 * 33.67130 * 21 20 19 36 36 H 1.08999 * 110.02012 * 218.37913 * 22 21 20 37 37 H 1.08993 * 110.02517 * 96.97182 * 22 21 20 38 38 H 1.08997 * 110.01708 * 119.30557 * 23 22 21 39 39 H 1.09001 * 110.01783 * 240.70100 * 23 22 21 40 40 H 1.09000 * 110.51149 * 326.32653 * 24 20 19 41 41 H 1.09003 * 110.50881 * 203.63378 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9427 0.8297 -2.6034 8 14 2.3224 -1.1196 -4.0080 9 1 1.3447 -2.1615 -4.4124 10 1 2.4871 -0.1402 -5.1121 11 1 3.6307 -1.7566 -3.7120 12 8 2.0141 -0.6845 1.1855 13 6 2.2172 0.0639 2.2811 14 8 1.9982 1.2518 2.2503 15 6 2.7195 -0.5771 3.5491 16 7 2.8584 0.4438 4.5906 17 6 1.8852 0.7847 5.4464 18 8 0.7790 0.2813 5.4482 19 7 2.2721 1.7510 6.3058 20 6 3.6544 2.0666 5.9602 21 6 4.6071 1.8537 7.1457 22 6 4.5234 3.1775 7.9379 23 6 4.0313 4.2521 6.9511 24 6 3.8318 3.5467 5.5911 25 6 3.9847 1.1593 4.8085 26 8 5.0337 1.0855 4.2051 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8901 30 1 0.7081 1.1609 -3.4843 31 1 3.6885 -1.0401 3.3630 32 1 2.0106 -1.3373 3.8773 33 1 1.7398 2.1536 7.0098 34 1 5.6242 1.6837 6.7925 35 1 4.2710 1.0188 7.7606 36 1 5.5077 3.4458 8.3214 37 1 3.8166 3.0755 8.7614 38 1 3.0862 4.6710 7.2964 39 1 4.7773 5.0413 6.8564 40 1 2.9400 3.9254 5.0917 41 1 4.7100 3.6802 4.9593 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000733709472.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:35:06 Heat of formation + Delta-G solvation = -133.456500 kcal Electronic energy + Delta-G solvation = -26464.854617 eV Core-core repulsion = 22538.658872 eV Total energy + Delta-G solvation = -3926.195745 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 310.141 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.81945 -39.59334 -38.81075 -38.06122 -36.04468 -35.55547 -33.88316 -33.27209 -29.95093 -29.34403 -28.95307 -28.23636 -25.31933 -23.78285 -22.78106 -21.16762 -20.94713 -20.66096 -19.66301 -18.12016 -17.51098 -16.86099 -16.64430 -16.26101 -16.17588 -15.66009 -15.42800 -15.21656 -15.04580 -14.87658 -14.35083 -14.18546 -13.86763 -12.96789 -12.91102 -12.73964 -12.20008 -12.10618 -12.03589 -11.78472 -11.71558 -11.62037 -11.23435 -11.08140 -10.97435 -10.88257 -10.83160 -10.45126 -10.39973 -10.28067 -10.25695 -9.66003 -9.58844 -9.46648 -8.92537 -8.49806 -6.18600 -4.25836 1.48283 1.94774 2.82347 2.85150 2.95382 3.25498 3.30659 3.34777 3.60765 3.73181 4.04495 4.08800 4.33243 4.60397 4.73422 4.90031 4.93577 4.98946 5.14310 5.15035 5.17683 5.25113 5.31215 5.42789 5.50704 5.61934 5.66304 5.70583 5.75542 5.88312 6.61270 6.62736 6.88957 6.89825 6.90642 7.11981 7.24383 7.58073 7.71286 7.90051 7.99831 8.11955 8.54563 8.84421 9.39418 10.88885 Molecular weight = 310.14amu Principal moments of inertia in cm(-1) A = 0.026018 B = 0.003250 C = 0.003155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.902097 B = 8613.301030 C = 8872.482448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.217 3.783 3 H 0.047 0.953 4 C -0.522 4.522 5 H 0.070 0.930 6 C 0.062 3.938 7 N -0.889 5.889 8 Si 0.914 3.086 9 H -0.277 1.277 10 H -0.284 1.284 11 H -0.271 1.271 12 O -0.351 6.351 13 C 0.441 3.559 14 O -0.512 6.512 15 C 0.123 3.877 16 N -0.564 5.564 17 C 0.709 3.291 18 O -0.535 6.535 19 N -0.711 5.711 20 C 0.115 3.885 21 C -0.117 4.117 22 C -0.122 4.122 23 C -0.123 4.123 24 C -0.119 4.119 25 C 0.542 3.458 26 O -0.455 6.455 27 H 0.100 0.900 28 H 0.038 0.962 29 H 0.016 0.984 30 H 0.266 0.734 31 H 0.134 0.866 32 H 0.135 0.865 33 H 0.440 0.560 34 H 0.093 0.907 35 H 0.082 0.918 36 H 0.074 0.926 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.074 0.926 40 H 0.086 0.914 41 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.903 3.737 22.214 23.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.165 3.835 3 H 0.064 0.936 4 C -0.560 4.560 5 H 0.088 0.912 6 C -0.140 4.140 7 N -0.527 5.527 8 Si 0.740 3.260 9 H -0.203 1.203 10 H -0.210 1.210 11 H -0.196 1.196 12 O -0.266 6.266 13 C 0.282 3.718 14 O -0.402 6.402 15 C 0.000 4.000 16 N -0.311 5.311 17 C 0.410 3.590 18 O -0.407 6.407 19 N -0.375 5.375 20 C 0.023 3.977 21 C -0.156 4.156 22 C -0.160 4.160 23 C -0.160 4.160 24 C -0.157 4.157 25 C 0.328 3.672 26 O -0.323 6.323 27 H 0.118 0.882 28 H 0.057 0.943 29 H 0.035 0.965 30 H 0.076 0.924 31 H 0.152 0.848 32 H 0.153 0.847 33 H 0.284 0.716 34 H 0.111 0.889 35 H 0.101 0.899 36 H 0.092 0.908 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.093 0.907 40 H 0.105 0.895 41 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 6.718 3.813 21.570 22.912 hybrid contribution -0.160 -0.051 -0.692 0.712 sum 6.558 3.762 20.878 22.205 Atomic orbital electron populations 1.22165 0.97377 1.00259 1.01464 1.20698 0.91493 0.93918 0.77421 0.93556 1.21027 1.32613 1.13545 0.88783 0.91171 1.24898 0.94917 0.95085 0.99104 1.69902 1.36024 1.22540 1.24219 0.86243 0.79318 0.79103 0.81292 1.20323 1.20972 1.19562 1.86468 1.75640 1.43444 1.21088 1.23349 0.75581 0.86399 0.86498 1.90616 1.48306 1.16750 1.84514 1.21056 1.06259 0.89170 0.83471 1.46115 1.14651 1.38522 1.31819 1.15924 0.83547 0.80310 0.79216 1.91028 1.19143 1.57667 1.72904 1.45201 1.13783 1.41177 1.37374 1.21352 0.84241 0.97219 0.94840 1.22499 0.99291 0.99332 0.94438 1.22208 1.02175 0.93579 0.98027 1.22217 1.01911 0.98176 0.93740 1.22504 1.04428 0.90034 0.98770 1.20400 0.83046 0.79878 0.83853 1.90815 1.24978 1.65176 1.51360 0.88169 0.94279 0.96487 0.92369 0.84826 0.84725 0.71562 0.88882 0.89898 0.90767 0.91237 0.91202 0.90724 0.89543 0.88863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.06 9.33 37.16 0.35 -3.71 16 2 C 0.22 5.97 2.56 -27.88 -0.07 5.90 16 3 H 0.05 1.41 7.16 -51.93 -0.37 1.04 16 4 C -0.52 -14.87 8.90 -34.44 -0.31 -15.17 16 5 H 0.07 1.96 7.81 -52.48 -0.41 1.54 16 6 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 7 N -0.89 -25.61 11.32 55.43 0.63 -24.99 16 8 Si 0.91 21.30 29.54 -169.99 -5.02 16.28 16 9 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 12 O -0.35 -8.50 9.86 -39.25 -0.39 -8.89 16 13 C 0.44 9.51 8.00 36.00 0.29 9.80 16 14 O -0.51 -12.53 15.65 -18.75 -0.29 -12.82 16 15 C 0.12 1.92 6.31 -5.20 -0.03 1.89 16 16 N -0.56 -8.43 2.11 -122.23 -0.26 -8.69 16 17 C 0.71 10.34 8.64 -87.42 -0.76 9.59 16 18 O -0.53 -9.54 17.50 5.33 0.09 -9.45 16 19 N -0.71 -7.17 6.03 -53.62 -0.32 -7.49 16 20 C 0.12 1.13 1.04 -132.88 -0.14 1.00 16 21 C -0.12 -0.80 6.02 -25.65 -0.15 -0.95 16 22 C -0.12 -0.61 6.82 -25.44 -0.17 -0.79 16 23 C -0.12 -0.72 6.82 -25.44 -0.17 -0.89 16 24 C -0.12 -1.07 6.03 -25.65 -0.15 -1.22 16 25 C 0.54 7.51 7.02 -10.99 -0.08 7.43 16 26 O -0.46 -7.32 17.79 5.60 0.10 -7.22 16 27 H 0.10 2.78 6.07 -51.93 -0.32 2.47 16 28 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 31 H 0.13 1.74 8.02 -51.93 -0.42 1.32 16 32 H 0.13 1.81 7.87 -51.93 -0.41 1.40 16 33 H 0.44 3.21 8.96 -40.82 -0.37 2.85 16 34 H 0.09 0.66 8.07 -51.93 -0.42 0.24 16 35 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 38 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 41 H 0.09 0.90 8.07 -51.93 -0.42 0.48 16 LS Contribution 349.38 15.07 5.27 5.27 Total: -1.00 -35.12 349.38 -7.34 -42.46 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: -5.64 Total: 1.04 kcal Atomic # 6 Polarization: 16.00 SS G_CDS: -1.50 Total: 14.50 kcal Atomic # 7 Polarization: -41.21 SS G_CDS: 0.05 Total: -41.17 kcal Atomic # 8 Polarization: -37.89 SS G_CDS: -0.49 Total: -38.38 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -35.12 -7.34 -42.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733709472.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.999 kcal (2) G-P(sol) polarization free energy of solvation -35.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds